View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7207_high_6 (Length: 341)
Name: NF7207_high_6
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 20 - 338
Target Start/End: Complemental strand, 9452113 - 9451795
Alignment:
| Q |
20 |
cagaggaataggtggaggtatagcagcagttttcaactggtgtgctaatctaattgtgagtgagtcattcttgagcatgataaaggctctaggaactacc |
119 |
Q |
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| T |
9452113 |
cagaggaataggtggaggtatagcagcagttttcaactggtgtgccaatctaattgtgagtgagtcattcttgagcatgataaaggctctaggaactacc |
9452014 |
T |
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| Q |
120 |
ggaacattcctcctctttgcagggttctctttgattggccttgtagccatttatttgttagtgcctgaaaccaaaggccttcagtttgaggaggttgaga |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9452013 |
ggaacattcctcctctttgcagggttctctttgattggccttgtagccatttatttgttagtgcctgaaaccaaaggccttcagtttgaggaggttgaga |
9451914 |
T |
|
| Q |
220 |
aattgcttcaaaaagggtttagacctttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtgcaagagatggcttgactgttatgtca |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9451913 |
aattgcttcaaaaagggtttagacctttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtgcaagagatggcttgactgttatgtca |
9451814 |
T |
|
| Q |
320 |
ttttgttcaacacgaaact |
338 |
Q |
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||||||||||||| ||||| |
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| T |
9451813 |
ttttgttcaacacaaaact |
9451795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 329
Target Start/End: Complemental strand, 9440887 - 9440579
Alignment:
| Q |
20 |
cagaggaataggtggaggtatagcagcagttttcaactggtgtgctaatctaattgtgagtgagtcattcttgagcatgataaaggctctaggaactacc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| |||||||||||| ||||||||||||| |
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| T |
9440887 |
cagaggaataggtggaggtatagcagcagttttcaactggtgtgctaatgtaattatgagtgagtcattcttaagcatgataaagactctaggaactact |
9440788 |
T |
|
| Q |
120 |
ggaacattcctcctctttgcagggttctctttgattggccttgtagccatttatttgttagtgcctgaaaccaaaggccttcagtttgaggaggttgaga |
219 |
Q |
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|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
9440787 |
ggaacattcctcacctttgcagggttctctttgattggatttgtagccatttatttgttggtgcctgaaaccaaaggtcttcagtttgaggaggttgaga |
9440688 |
T |
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| Q |
220 |
aattgcttcaaaaagggtttagacctttcccatttaacaagaaaaaggatgacgacaaagggaaggagaaagtgcaagagatggcttgactgttatgtca |
319 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| || | || |||||| ||||||||| |
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| T |
9440687 |
aattgcttcagaaagggtttagacctttcccatttaacaagaaaaaggatgatgacaaagggaaggaggaagtgaaacacatagcttgattgttatgtc- |
9440589 |
T |
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| Q |
320 |
ttttgttcaa |
329 |
Q |
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|||||||||| |
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| T |
9440588 |
ttttgttcaa |
9440579 |
T |
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