View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7207_low_16 (Length: 209)
Name: NF7207_low_16
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 25332444 - 25332614
Alignment:
| Q |
19 |
acaactctccgaagaaatcactgcactgtaactaacttcacttcaactcattcacactcattcatttcgatacaattcatatttaattagtttcggaatt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
25332444 |
acaactctccgaagaaatcactgcactgtaactaacttcacttcaactc----------attcatttcgatacaattcatatttaattcgtttcttaatt |
25332533 |
T |
|
| Q |
119 |
tttgattaggtgttcaatttttcaagaggattgccaaattattccaaaatctccacctcaaattgttattaagcacaggtt |
199 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
25332534 |
ttttattaggtgttcaatttttcaagaggattgccaaattattccaaaatctccacctcaaattgttattaagctcaggtt |
25332614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University