View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7207_low_2 (Length: 570)
Name: NF7207_low_2
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 43092167 - 43092451
Alignment:
| Q |
1 |
acacacacgaaagcacaactgataaaatatcggccattttaaaaatcagagcagttaacaggagtgaaattttctttaaggatacaatttgagcaacaca |
100 |
Q |
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| T |
43092167 |
acacacacgaaaacacaactgacaaaatatcggccattttaaaaaccatagcagttaacaggagtgaaattttctttaaggatacaatttgagcaacaca |
43092266 |
T |
|
| Q |
101 |
cgttgttatcactgccagaaaagacaagaaagagcccaacgcattgagttgtaaatcagtgattgttgcaattccaacacccaaaagtaggattacaaga |
200 |
Q |
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| T |
43092267 |
tgttgttatcactgccagaaaagacaagaaagagcccaacgcattgagttgtaaatcagtgattgttgcaattccaacacccaaaagtaggattacaaga |
43092366 |
T |
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| Q |
201 |
gaaaattgggttcttctactgcagttacaaaaacaagagaatagtcaatacaattgaaattgtttacaagtccttcctttgttcc |
285 |
Q |
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| T |
43092367 |
gaaaattgggttcttctactgcatttacaaaaacaagagaacagtcaatacaattgaaattgtttacaagtccttcctttgttcc |
43092451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 412 - 570
Target Start/End: Original strand, 43092577 - 43092735
Alignment:
| Q |
412 |
tatcatacatttatctctgcagtgaataactaaaagtaacattgataaaataacaatggatgtttcattaaactttaaaatcaatgaatagataagaaca |
511 |
Q |
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| T |
43092577 |
tatcatacatttatctctgcagtgaataactaaaagtaacattgataaaataacaatggatgtttcattaaactttaaaattaatgaatagataagaaca |
43092676 |
T |
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| Q |
512 |
tattttttctgcaaatgcgacaaaagaaacacaatcaagataactatgccaataaaaaa |
570 |
Q |
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| T |
43092677 |
tattttttctgcaaatgagacaaaagaaacacaatcaaaataactatgccaataaaaaa |
43092735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 43084703 - 43084811
Alignment:
| Q |
75 |
tttaaggatacaatttgagcaacacacgttgttatcactgccagaaaagacaagaaagagcccaacgcattgagttgtaaatcagtgattgttgcaattc |
174 |
Q |
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|||||||||||||| ||||||||||| ||||| ||||| ||||||| ||| |||||||| |||| ||||| | || ||||| |||| ||||||||||| |
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| T |
43084703 |
tttaaggatacaatctgagcaacacatgttgtaatcaccgccagaagagataagaaagatcccagagcattcaactgcaaatctgtgactgttgcaattc |
43084802 |
T |
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| Q |
175 |
caacaccca |
183 |
Q |
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| T |
43084803 |
caacaccca |
43084811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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