View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7207_low_3 (Length: 432)
Name: NF7207_low_3
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 384; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 19 - 418
Target Start/End: Original strand, 31263168 - 31263566
Alignment:
| Q |
19 |
attagagccgaaggatattttattatagttaaaacaataactaaactaatttttctatttagctcgtgctgacacttgaaggatcattgatattgcatgt |
118 |
Q |
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| T |
31263168 |
attagagccgaaggatattttattatagttaaaacaataactaaactactttttctatttagctcgtgctgacacttgaaggatcattgatattgcatgt |
31263267 |
T |
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| Q |
119 |
ctttccttacatctctttggttgatgataacgataactagaaaacaagttatgttgttagggtttttcataaatatcatgatgttgaagaaatgtttagt |
218 |
Q |
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| T |
31263268 |
ctttccttacatctctttggttgatgataacgataactagaaaacaagttatgttgttagggtttttcataaatatcatgatgttgaagaaatgtttagt |
31263367 |
T |
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| Q |
219 |
tggagatcaggagaagaaactgaaccaatgttgtatgtttcgagtgaaagtgagtagctgatgtggagttgtattaagttatgttatatttaatatgttt |
318 |
Q |
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| T |
31263368 |
tggagatcaggagaagaaactgaaccaatgttgtatgtttcgagtgaaagtgagtagctgatgtggagttgtattaagttatgttatatttaatatgttt |
31263467 |
T |
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| Q |
319 |
atctagtttgtgggatttaatgttctgtattttcaatgaaaatcttcacttttttatttaatcctagtttgtgggattttaatgtgttctgtgatgtcca |
418 |
Q |
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| T |
31263468 |
atctagtttgtgggatttaatgttctgtattttcaatgaaaatcttcacttttttatttaatcctagtttgtggga-tttaatgtgttctgttatgtcca |
31263566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 321 - 397
Target Start/End: Original strand, 31263531 - 31263611
Alignment:
| Q |
321 |
ctagtttgtgggatttaatgt--tctgt-attttcaatgaaaatcttcactttt-ttatttaatcctagtttgtgggattt |
397 |
Q |
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| T |
31263531 |
ctagtttgtgggatttaatgtgttctgttatgtccaatgaaattcttcactttttttatttaatcctagtttctgagattt |
31263611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 121 - 380
Target Start/End: Complemental strand, 15854212 - 15853948
Alignment:
| Q |
121 |
ttccttacatctctttggttgatgataacgataactagaaaacaagttatgttgttagggtttttcataaatatcatgatgttgaagaaatgtttagttg |
220 |
Q |
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| T |
15854212 |
ttccttacatgtctattgttgatgatgacgataacaagaaaacaaattaagatcctagggctctttgtaaagatcttgatgttgaagaaatatttcgttg |
15854113 |
T |
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| Q |
221 |
gagatcaggagaagaaactgaaccaatgttgt---atgtttcgagtgaaagtgagtagctgatgtggagttgtattaagttatgttatatttaatatgtt |
317 |
Q |
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| T |
15854112 |
gagatcaagagaagaaactgaatcgatgttgttgtatgtatcgagtgaaagtgagtagctgatatggagttatatttagttatgttatatttaatatgtt |
15854013 |
T |
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| Q |
318 |
tat-ctagtttgtgggatttaatgttctg-tattttcaatgaaaatcttcacttttttatttaat |
380 |
Q |
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| T |
15854012 |
tatcctagtttgtgggtgtcaatgttatgatatgttcaatgatgatcttcactcttttatttaat |
15853948 |
T |
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