View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7207_low_4 (Length: 409)
Name: NF7207_low_4
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_low_4 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0319 (2 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
| [»] scaffold0107 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 10787029 - 10787425
Alignment:
| Q |
1 |
tgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787029 |
tgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgag |
10787128 |
T |
|
| Q |
101 |
gaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaag |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787129 |
gaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaag |
10787228 |
T |
|
| Q |
201 |
agaccaaaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcc |
300 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
10787229 |
agaccagaaatcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtcc |
10787328 |
T |
|
| Q |
301 |
atagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
10787329 |
atagcattctgcaacaagccttggacggtaggaatgcagggctcagggtctagcatgaactgggtacacctcagaatgcagaacatgtgatgtccat |
10787425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 14688764 - 14688368
Alignment:
| Q |
1 |
tgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgag |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| | |||||||||||||| || || |||||||| || |||||| ||| |
|
|
| T |
14688764 |
tgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgccagttgtgccagttgttgcagaatcgacgacggaccaaccgag |
14688665 |
T |
|
| Q |
101 |
gaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaag |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
14688664 |
gaggcagtaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcccgttatatctctgcgatagcgcgcgacgtttcttgtctccaaaag |
14688565 |
T |
|
| Q |
201 |
agaccaaaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcc |
300 |
Q |
| |
|
||||||||||||||||||||| |||||| |||| || || ||||| ||||||||||||||| || ||||| |||||||||||||||||||| |||||| |
|
|
| T |
14688564 |
agaccaaaaatcatgaaaaagtgtagcggtatcaggtgtgataccgtcaagcgccctcagcagcacgtcgaaatacagggcggtcacagagccagcatcc |
14688465 |
T |
|
| Q |
301 |
atagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
|| ||||||| |||||| |||||||||||||| |||||||||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||| |
|
|
| T |
14688464 |
atggcattcttcaacaaaccttggatggtagggatgcagggctcagggtccagcatgaactgggtgcacctcaaaatgcagaacatgtgatgtccat |
14688368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 7360766 - 7360370
Alignment:
| Q |
1 |
tgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgag |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| || || |||||||| || | |||| ||| |
|
|
| T |
7360766 |
tgctcatcctcagcagggtgatagcctcgatagttacgtctcaatacatccccgcgacagttgtgccagttgttgcagaatcgacgacggatcaaccgag |
7360667 |
T |
|
| Q |
101 |
gaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaag |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||| |||||| ||||||| |||||||||| ||||| ||||||||||| |||||| |||||||||||| |
|
|
| T |
7360666 |
gaggcagtaatcttttataccagcctgaaacgaaacggaaagaggtgtccacgcctgttatgtctctacgatagcgcgcgacgtttcgtgtctccaaaag |
7360567 |
T |
|
| Q |
201 |
agaccaaaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcc |
300 |
Q |
| |
|
|||| | |||||||||||||| ||||| |||| || |||||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
7360566 |
agacaagaaatcatgaaaaagtgcagcggcatcaggtgtgacaccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatcc |
7360467 |
T |
|
| Q |
301 |
atagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
|| ||||||| ||| || |||||||||||||| | |||||||||||| ||||||||||| ||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
7360466 |
atggcattcttcaagaaaccttggatggtagggacgcagggctcaggatccagcatgaactgggtacacctcaaaatgcagaacatgtggtgtccat |
7360370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 4 - 214
Target Start/End: Original strand, 10157805 - 10158023
Alignment:
| Q |
4 |
tcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggag |
103 |
Q |
| |
|
|||||||||||||| ||| | ||||||||||| || || || |||| || | |||||||||||||| || || |||||||| |||| |||||| || | |
|
|
| T |
10157805 |
tcgtcctcagcaggatgaaatcctcgatagttgcgccttaacccatatccagggcagttgtgccagttgttgcagaatcgacgacgaatcaactgggggg |
10157904 |
T |
|
| Q |
104 |
g--------caggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctcc |
195 |
Q |
| |
|
| ||| || |||||||||||||||||||||||||| || ||| |||||| || |||||||| |||||||| |||||||| || || |||||| |
|
|
| T |
10157905 |
gggggggggcagcaaccttttgtaccagcctgaaacgaagcgaaagtgggagtcccctcccgttatctccctgcgataacgcgcaacattcttcgtctcc |
10158004 |
T |
|
| Q |
196 |
aaaagagaccaaaaatcat |
214 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
10158005 |
aaaagagaccaaaagtcat |
10158023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 1 - 397
Target Start/End: Original strand, 1729847 - 1730243
Alignment:
| Q |
1 |
tgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgag |
100 |
Q |
| |
|
||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
1729847 |
tgctcgtcctcagcaaggcgataacctcgatagttgcgtctcaatccatccccgtgacagttgtgccagttattgcaaaatcgacggcggaccaactgag |
1729946 |
T |
|
| Q |
101 |
gaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaag |
200 |
Q |
| |
|
||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |
|
|
| T |
1729947 |
gaggcagtaatctcttataccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgtttcttgtctccaaaag |
1730046 |
T |
|
| Q |
201 |
agaccaaaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcc |
300 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
1730047 |
agaccagaaatcatgaaaaagtctagcggaatcaagtctgacatcgttaagcaccctcagcagtacatcgaagtacagggcggtcacagagccagcgtcc |
1730146 |
T |
|
| Q |
301 |
atagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
|||||||||| || ||| ||||||| ||||||||| ||||||||||||| ||||||||| || |||||||||| |||||| ||||| |||||||||| |
|
|
| T |
1730147 |
atagcattcttcagcaaaccttggacggtaggaatacagggctcagggtacagcatgaactgagtacacctcaaaatgcagaacatatgatgtccat |
1730243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 253 - 309
Target Start/End: Complemental strand, 22338640 - 22338584
Alignment:
| Q |
253 |
gccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||||||||| ||||| ||||| || ||| |||||||||| ||||||||||||||| |
|
|
| T |
22338640 |
gccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcattc |
22338584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 397
Target Start/End: Complemental strand, 14329295 - 14328899
Alignment:
| Q |
1 |
tgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgag |
100 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| || || |||||||| | || |||| ||| |
|
|
| T |
14329295 |
tgctcatcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacaaatcaaccgag |
14329196 |
T |
|
| Q |
101 |
gaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaag |
200 |
Q |
| |
|
||||||| |||||||| ||||||||||||||||||||||||||||||||| | || ||||| ||||||||||||||||| |||||| |||||||||||| |
|
|
| T |
14329195 |
gaggcagtaatcttttataccagcctgaaacgaagcggaaacgggtgtccacacccgttatgtctctgcgatagcgcgcgacgtttcgtgtctccaaaag |
14329096 |
T |
|
| Q |
201 |
agaccaaaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcc |
300 |
Q |
| |
|
|||||| |||||||||||||| |||||| |||| || || ||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||| |
|
|
| T |
14329095 |
agaccagaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatcc |
14328996 |
T |
|
| Q |
301 |
atagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
|| ||||||| || ||| |||| ||||||||| |||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
|
|
| T |
14328995 |
atggcattcttcagcaaaccttagatggtagggatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatgtgatgtccat |
14328899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 18166922 - 18166544
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||| | |||||||||||||| || | |||||| || |||| ||||||||||| || || |||||||| | || ||||| |||||||| | |
|
|
| T |
18166922 |
tcagcaggatgaaaccctcgatagttacgccttagtccatctccacgacaattgtgccagttgttgcagaatcgacgacaaattaactggggaggcagca |
18166823 |
T |
|
| Q |
110 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaac-gttttttgtctccaaaagagaccaaa |
208 |
Q |
| |
|
| | |||||||||||||| |||||||||||| ||| |||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
18166822 |
accgcttgtaccagcctgagacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttttgtctccaaaagagaccaaa |
18166723 |
T |
|
| Q |
209 |
aatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
308 |
Q |
| |
|
| |||| || || ||||| |||| | || ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| || |
|
|
| T |
18166722 |
agtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcgtt |
18166623 |
T |
|
| Q |
309 |
ctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
| | ||| | | || |||||||||||| |||||| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
18166622 |
cctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
18166544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 7 - 397
Target Start/End: Original strand, 24954596 - 24954977
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
106 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||| ||| |||||||| || | ||| ||||||||| |
|
|
| T |
24954596 |
tcctcagcagggtgatagcctcgatagttgcgtctcaatccatccccgcgacagttgttgcag---------aatcgacgacggatcaatcgaggaggca |
24954686 |
T |
|
| Q |
107 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
206 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||| ||||||| |||||||||| |||| ||||| ||||| |||||| |||||||| ||||||||| |
|
|
| T |
24954687 |
gtaatcttttataccagcctgaaacgaagcggaaacaggtgtccacgcctgttatgtctcgacgatatcgcgcgacgtttcgtgtctccagaagagacca |
24954786 |
T |
|
| Q |
207 |
aaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
306 |
Q |
| |
|
|||||||||||||| |||||| |||| || || ||||| |||||||||||||||||| ||||||||||| |||||||||||||| |||||||| ||| |
|
|
| T |
24954787 |
gaaatcatgaaaaagtgtagcggcatcaggtgtgataccgtcaagcgccctcagcagtacgtcgaagtacagagcggtcacagagccagcatccatggca |
24954886 |
T |
|
| Q |
307 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
|||| || |||||||||||||||||| ||||| ||||||||||||| |||||| ||||||||||||| |||||| |||||||| ||||||| |
|
|
| T |
24954887 |
ttcttcagcaagccttggatggtagggatgcaaggctcagggtccaacatgaactgggtacacctcaaaatgcagaacatgtgttgtccat |
24954977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 23621749 - 23621371
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggagg-cagg |
108 |
Q |
| |
|
|||||||| ||| | ||| ||||||| || || |||||||| || |||||||||||||||| || || |||||||| |||| ||||| || || ||| |
|
|
| T |
23621749 |
tcagcaggatgaaaccctagatagttgcgccttaatccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaactggggggggcagc |
23621650 |
T |
|
| Q |
109 |
aatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaa |
208 |
Q |
| |
|
|| || |||||||||| |||||||||||||||| ||| |||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||||| |
|
|
| T |
23621649 |
aacctcttgtaccagcatgaaacgaagcggaaatgggagtcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaa |
23621550 |
T |
|
| Q |
209 |
aatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
308 |
Q |
| |
|
| ||| || || ||||| ||| | || ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||||||| |
|
|
| T |
23621549 |
agtcaatgaagagttcagcggtgtcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcatt |
23621450 |
T |
|
| Q |
309 |
ctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
| | ||| | || | |||||||||||| |||||| || ||||||||||| || || |||| ||| ||||||||| |
|
|
| T |
23621449 |
cctaagcaaacgtttaacggtaggaatgcatggctcaatatctagcatgaattgagtgcatctcaaaatacaaaacatg |
23621371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 23196144 - 23195767
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || |||||||||||||||| || || |||||||| |||| || || ||||||| | |
|
|
| T |
23196144 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacgaattaattggggaggcaaca |
23196045 |
T |
|
| Q |
110 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaaa |
209 |
Q |
| |
|
| || || |||||||||| || ||||||||| ||| |||||| ||| ||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
23196044 |
acctcttaaaccagcctgagacaaagcggaaatgggagtcccctcctattatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
23195945 |
T |
|
| Q |
210 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||| || || ||||| |||| | || ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||||| ||| |
|
|
| T |
23195944 |
gtcattgaagagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagtgttc |
23195845 |
T |
|
| Q |
310 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
| ||| | | || |||||||||||| |||||| ||||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
23195844 |
ctaagcaaacacttgacggtaggaatgcatggctcaacgtccagcatgaattgagtgcatctcaaaatgcaaaacatg |
23195767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 10 - 387
Target Start/End: Original strand, 22643208 - 22643584
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || ||||||||||| |||| || || |||||||| |||| |||| ||||| || | |
|
|
| T |
22643208 |
tcagcaggatgaaaccctcgatagttgcgccttagtccatctccaagacagttgtgctagttgttgcagaatcgacgacgaattaacttgggaggaagca |
22643307 |
T |
|
| Q |
110 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaaa |
209 |
Q |
| |
|
| || |||||||||||| | |||||| ||||| ||| ||||| |||||| |||| |||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
22643308 |
acctcttgtaccagcctaagacgaagtggaaatgggactcccctcctgttgtctccctgcgataatgcgcaacattttttgtctccaaaagagaccaaaa |
22643407 |
T |
|
| Q |
210 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||| || || ||||| ||||| || ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| || ||| |
|
|
| T |
22643408 |
gtcattgaagagttcagcggtatcaa-aatgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttc |
22643506 |
T |
|
| Q |
310 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
| ||| | | || |||||||||| |||||| |||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
22643507 |
ctaagcaaacgcttgacaataggaatgcatggctcaacatccagcatgaattgagtgcatctcaaaatgcaaaacatg |
22643584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 158; Significance: 6e-84; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 41375717 - 41375532
Alignment:
| Q |
1 |
tgctcgtcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgag |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| || |
|
|
| T |
41375717 |
tgctcgtcctcagcagggtgataacctcgatagttgcgtctcaatccatccccgtgacagttgtaccagttattgcaaaatcgacggcgaaccaactaag |
41375618 |
T |
|
| Q |
101 |
gaggcaggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttt |
186 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
41375617 |
gaggcagtaatctcttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcgacgttt |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 10 - 397
Target Start/End: Original strand, 22080854 - 22081242
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||||| ||||||||||| || ||||||||||||||| |||||||||||||||| || || |||||||| || | ||||| |||||||| | |
|
|
| T |
22080854 |
tcagcaggatgataccctcgatagttgcgcctcaatccatccccgcgacagttgtgccagttgttgcagaatcgacgacggattaactggggaggcagta |
22080953 |
T |
|
| Q |
110 |
atcttttgtaccagcc-tgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaa |
208 |
Q |
| |
|
|||| ||||||||||| | | ||||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||| | |
|
|
| T |
22080954 |
atctcttgtaccagccattagacgaagcggaaacgggtatccccgcctgttatctccctgcgatagcgcgcgacgtttcttgtctccaaaagagaccaga |
22081053 |
T |
|
| Q |
209 |
aatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
308 |
Q |
| |
|
|||||||||| || ||| | |||| || || ||| | |||||||||||||||||| |||||||| || ||||||||||| || |||||||| || || |
|
|
| T |
22081054 |
aatcatgaaagagttcagcagtatcaggtgtgataccatcaagcgccctcagcagtacgtcgaagtagagagcggtcacagaaccagcatccatggcgtt |
22081153 |
T |
|
| Q |
309 |
ctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
|| | || |||| || |||||||||||| |||||| |||| ||| ||||||||||| |||| |||||||||||| |||||||||| |
|
|
| T |
22081154 |
cttaagaaaacctttgacggtaggaatgcatggctcaatatccaacataaattgggtacatctcaaaatgcaaaacatatgatgtccat |
22081242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 211 - 397
Target Start/End: Complemental strand, 41375532 - 41375346
Alignment:
| Q |
211 |
tcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattct |
310 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
41375532 |
tcatgaaaaagtctagcggaatcaagtctgacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccagcgtccatagcattct |
41375433 |
T |
|
| Q |
311 |
gcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgatgtccat |
397 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| |||||||||| |
|
|
| T |
41375432 |
tcagcaagccttggacggtaggaatgcagggctcagggtccagcatgaactgggtacacctcaaaatgcagaacatatgatgtccat |
41375346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 308
Target Start/End: Complemental strand, 22799844 - 22799785
Alignment:
| Q |
249 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcatt |
308 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| |||||||||||||| |
|
|
| T |
22799844 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagcatt |
22799785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 10 - 391
Target Start/End: Original strand, 74318 - 74699
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||||| ||||| |||||||| || | |||||| || |||||||||||||||| || || |||||||| || | |||| |||||||| | |
|
|
| T |
74318 |
tcagcaggatgataccctcggtagttacgccttagtccatctccacgacagttgtgccagttgttgcagaatcgacgacggattaacttgggaggcagta |
74417 |
T |
|
| Q |
110 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaaa |
209 |
Q |
| |
|
| || |||||||||||||| |||||||| |||||||||||||| ||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
74418 |
acctcttgtaccagcctgagacgaagcgaaaacgggtgtcccctcctgttatctccctgcgatagcgcgcaacatttttcgtctccaaaagagaccaaaa |
74517 |
T |
|
| Q |
210 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||| || || ||||| |||| || || ||||| ||| || |||| || |||||| ||||| || ||||||||||| || ||||||||||| ||| |
|
|
| T |
74518 |
ctcattgaagagttcagcggtatcaggtgtgataccgtcaagtgctctcaccattacatcaaagtaaagagcggtcacagaaccagcatccatagcgttc |
74617 |
T |
|
| Q |
310 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatgtgat |
391 |
Q |
| |
|
| | ||| | || |||||||||||| |||||| || |||||||||||||| || |||| |||||||||||| |||| |
|
|
| T |
74618 |
ttaagcaaatgcttgacggtaggaatgcatggctcaacatctagcatgaattgggtgcatctcaaaatgcaaaacatatgat |
74699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 387
Target Start/End: Original strand, 38791 - 39171
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
106 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | ||||| |||||||| || || ||||||||||||| |||||||| |||| |
|
|
| T |
38791 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
38890 |
T |
|
| Q |
107 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
206 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||| ||| ||| | ||| ||||||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
38891 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
38990 |
T |
|
| Q |
207 |
aaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
306 |
Q |
| |
|
||| |||| ||||| ||||| |||| | || ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
38991 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcg |
39090 |
T |
|
| Q |
307 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
||| | ||| | || || |||||||||||| ||||| |||| ||||||||| || || |||| ||||||||||||| |
|
|
| T |
39091 |
ttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
39171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 7 - 387
Target Start/End: Complemental strand, 32947 - 32567
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
106 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | ||||| |||||||| || || ||||||||||||| |||||||| |||| |
|
|
| T |
32947 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttttgccagttgttgcagaatcgacggcgaattaactgagggggca |
32848 |
T |
|
| Q |
107 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
206 |
Q |
| |
|
| || ||||||||||||||||||| |||||||||| ||| ||| | ||| ||||||| |||||||| |||||||| ||||| ||||||||||||||||| |
|
|
| T |
32847 |
gcaaccttttgtaccagcctgaaatgaagcggaaatgggaatcctctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaagagacca |
32748 |
T |
|
| Q |
207 |
aaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
306 |
Q |
| |
|
||| |||| ||||| ||||| |||| | || ||||| |||||| ||||||| |||||| ||||| || ||||||||||| || ||||||||||| |
|
|
| T |
32747 |
aaagtcattgaaaagttcagcggtatcaggagtgataccgtcaagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatagcg |
32648 |
T |
|
| Q |
307 |
ttctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
||| | ||| | || || |||||||||||| ||||| |||| ||||||||| || || |||| ||||||||||||| |
|
|
| T |
32647 |
ttcctaagcaaacgtttgacggtaggaatgcatggctcgacatccaacatgaattgagtgcatctcaaaatgcaaaacatg |
32567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 10 - 387
Target Start/End: Complemental strand, 4138 - 3761
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||| | ||||||||||| ||||| | |||||| || |||||||||||||||| || || |||| ||| ||||| ||| | |||||||| | |
|
|
| T |
4138 |
tcagcaggatgaaaccctcgatagttgcgtcttagtccatctccacgacagttgtgccagttgttgcagaatcaacgacgaactaaccggggaggcagca |
4039 |
T |
|
| Q |
110 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaaa |
209 |
Q |
| |
|
| || |||||||||| ||| || |||| |||| ||| ||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
4038 |
acctattgtaccagcatgagacaaagcagaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
3939 |
T |
|
| Q |
210 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||| || || ||||| |||| | || |||| ||||| ||||||| |||||| ||||| || ||||||||||| || |||||||| || ||| |
|
|
| T |
3938 |
gtcattgaagagttcagcggtatcaggagtgatgccgtcgagcgctctcagcattacatcaaagtaaagagcggtcacagaaccagcatccatggcgttc |
3839 |
T |
|
| Q |
310 |
tgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
| | || | | ||||||||||||||| |||||| ||||||||||||| || || |||| ||||||||||||| |
|
|
| T |
3838 |
ttaagcagacgcttgatggtaggaatgcatggctcaacatccagcatgaattaagtgcatctcaaaatgcaaaacatg |
3761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 5e-41; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 7 - 387
Target Start/End: Complemental strand, 14562533 - 14562148
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggagg-- |
104 |
Q |
| |
|
||||||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || ||||||||||||| ||||| || || |
|
|
| T |
14562533 |
tcctcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacggcgaattaactggggggggg |
14562434 |
T |
|
| Q |
105 |
---caggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaaga |
201 |
Q |
| |
|
||| || |||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||| |||||||| ||||| |||||||||||| |
|
|
| T |
14562433 |
gggcagcaaccttttgtaccagcctgaaacgaagcggaaatgggaatcccctcctattatctccctgcgataacgcgcaacatttttcgtctccaaaaga |
14562334 |
T |
|
| Q |
202 |
gaccaaaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatcca |
301 |
Q |
| |
|
|||||||| |||| ||||| || || |||| | || ||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||| |
|
|
| T |
14562333 |
gaccaaaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtcca |
14562234 |
T |
|
| Q |
302 |
tagcattctgcaacaagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
|||||||| | ||| | | || |||||||||||| |||||| ||||||||| ||| ||||| |||| ||| ||||||||| |
|
|
| T |
14562233 |
tagcattcctaagcaaacgcttgacggtaggaatgcatggctcaacatccagcatgtgttgagtacatctcaaaatacaaaacatg |
14562148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 7 - 305
Target Start/End: Complemental strand, 13284670 - 13284372
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
106 |
Q |
| |
|
||||||||||| ||| ||||||||||| |||||||| ||||| || | |||||||||||||| || || ||||| || |||| |||| || |||| |
|
|
| T |
13284670 |
tcctcagcaggatgaattcctcgatagttgcgtctcaacccatctccagggcagttgtgccagttgttgcagaatcggcgacgaattaactaggggggca |
13284571 |
T |
|
| Q |
107 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
206 |
Q |
| |
|
| || || ||||||||||||||||||||||| ||| || |||||| || |||||||| |||||||| || ||||| || || ||||||||||||||||| |
|
|
| T |
13284570 |
gcaacctcttgtaccagcctgaaacgaagcgaaaataggagtcccctcccgttatctccctgcgataacgagcaacattcttcgtctccaaaagagacca |
13284471 |
T |
|
| Q |
207 |
aaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
305 |
Q |
| |
|
||| |||| || || || || |||| | || ||||| |||||||||||||| |||||| ||||| || ||| |||||||||| || |||||||| |
|
|
| T |
13284470 |
aaagtcattgaagagttcagtggtatcaggagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagc |
13284372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 305
Target Start/End: Complemental strand, 14742016 - 14741960
Alignment:
| Q |
249 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagc |
305 |
Q |
| |
|
|||||||||||||| ||||| ||||| || ||| |||||||||| ||||||||||| |
|
|
| T |
14742016 |
aagcgccctcagcatgacatcaaagtagagcgcgctcacagagccagcatccatagc |
14741960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 7 - 308
Target Start/End: Original strand, 19284 - 19584
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
106 |
Q |
| |
|
||||| ||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| ||||| || |||| |
|
|
| T |
19284 |
tcctcggcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactgggg-ggca |
19382 |
T |
|
| Q |
107 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
206 |
Q |
| |
|
| || || ||||||||||||||||||||| ||||| ||| ||||| ||||||||||| |||||||| |||||||| ||||||||||||||||||||||| |
|
|
| T |
19383 |
gcaacctcttgtaccagcctgaaacgaagtggaaatgggaatcccctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagacca |
19482 |
T |
|
| Q |
207 |
aaaatcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagca |
306 |
Q |
| |
|
||| |||| ||||| || || |||| | || ||||| || |||| |||| | |||||| ||||| || ||| |||||||||| || ||||||||| |
|
|
| T |
19483 |
aaagtcattgaaaagttcagtggcatcaggagtgataccgtcaatcgccatcagaattacatcaaagtaaagagcgctcacagagccagcgtccatagca |
19582 |
T |
|
| Q |
307 |
tt |
308 |
Q |
| |
|
|| |
|
|
| T |
19583 |
tt |
19584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 243 - 386
Target Start/End: Original strand, 13680 - 13823
Alignment:
| Q |
243 |
accgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattctgcaacaagccttggatggtaggaatgcagggc |
342 |
Q |
| |
|
||||| || ||||||||||| |||||| ||||| || ||| |||||||||| || |||||||||||| | ||| | | || |||||||||||| ||| |
|
|
| T |
13680 |
accgtcaatcgccctcagcattacatcaaagtaaagagcgctcacagagccagcgtccatagcattcctaagcaaacgcttgacggtaggaatgcatggc |
13779 |
T |
|
| Q |
343 |
tcagggtccagcatgaattgggtacacctcagaatgcaaaacat |
386 |
Q |
| |
|
||| ||||||||| ||| ||||| |||| ||| |||||||| |
|
|
| T |
13780 |
tcaacatccagcatgtgttgagtacatctcaaaatacaaaacat |
13823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 12574 - 12276
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| |||| ||| ||||| | |
|
|
| T |
12574 |
tcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagca |
12476 |
T |
|
| Q |
110 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaaa |
209 |
Q |
| |
|
| || |||||||||||| |||| |||| |||| ||| || || ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
12475 |
acctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
12376 |
T |
|
| Q |
210 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||| ||||| || || |||| | || | ||| |||||||||||||| ||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
12375 |
gtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
12276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 309
Target Start/End: Complemental strand, 18325 - 18027
Alignment:
| Q |
10 |
tcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggcagga |
109 |
Q |
| |
|
|||||||| ||| | ||||||||||| || || | |||||| || | |||||||||||||| || || |||||||| |||| |||| ||| ||||| | |
|
|
| T |
18325 |
tcagcaggatgaaatcctcgatagttgcgccttagtccatctccagggcagttgtgccagttgtttcagaatcgacgacgaattaact-agggggcagca |
18227 |
T |
|
| Q |
110 |
atcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaaa |
209 |
Q |
| |
|
| || |||||||||||| |||| |||| |||| ||| || || ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
18226 |
acctcttgtaccagcctaaaacaaagcagaaatgggaatcgcctcctgttatctccctgcgataacgcgcaacattttttgtctccaaaagagaccaaaa |
18127 |
T |
|
| Q |
210 |
atcatgaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||| ||||| || || |||| | || | ||| |||||||||||||| ||||| ||||| || ||| |||||||||| || |||||||||||| |
|
|
| T |
18126 |
gtcattgaaaagttcagtggtatcaggagtgatatcgtcaagcgccctcagcattacatgaaagtaaagagcgctcacagagccagcgtccatagcattc |
18027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0040 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 7 - 206
Target Start/End: Original strand, 35865 - 36064
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
106 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||||| ||||| | | |||||||||||||| || || ||||| || |||| ||||| || |||| |
|
|
| T |
35865 |
tcctcagcaggatgaaaccctcgatagttgcgtctcagcccatctctagggcagttgtgccagttgttgcagaatcggcgacgaattaactggggcggca |
35964 |
T |
|
| Q |
107 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagacca |
206 |
Q |
| |
|
| || || ||||||||||||||||||||||| || ||| |||||| ||||||||||| |||||||| |||||||| || |||||||||||||||||||| |
|
|
| T |
35965 |
gcaacctcttgtaccagcctgaaacgaagcgaaagtgggagtcccctcctgttatctccctgcgataacgcgcaacattctttgtctccaaaagagacca |
36064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 115 - 387
Target Start/End: Original strand, 28608 - 28880
Alignment:
| Q |
115 |
ttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaacgttttttgtctccaaaagagaccaaaaatcat |
214 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||| ||||||||||| |||||||| |||||||| ||||| |||||||||||||||||||| ||| |
|
|
| T |
28608 |
ttgtaccagcctgaaacgaagcgaaaatgggagtcccctcctgttatctccctgcgataacgcgcaacatttttcgtctccaaaagagaccaaaagtcaa |
28707 |
T |
|
| Q |
215 |
gaaaaagcctagcggaatcaagtcggacaccgttaagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattctgcaa |
314 |
Q |
| |
|
|| || || || |||| | || ||||| |||||||||||||| |||||| ||||| || ||| | |||||||| || |||||||| ||| | |
|
|
| T |
28708 |
tgaagagttcagtggtatcatgagtgataccgtcaagcgccctcagcattacatcaaagtaaagagcgcttacagagccagcgtccatagcgttcctaag |
28807 |
T |
|
| Q |
315 |
caagccttggatggtaggaatgcagggctcagggtccagcatgaattgggtacacctcagaatgcaaaacatg |
387 |
Q |
| |
|
||| | | || |||||||||||| |||||| || ||||||||||| || || |||| ||| ||||||||| |
|
|
| T |
28808 |
caaacgcttgacggtaggaatgcatggctcaacatctagcatgaattgagtgcatctcaaaatacaaaacatg |
28880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 182
Target Start/End: Complemental strand, 19030469 - 19030294
Alignment:
| Q |
7 |
tcctcagcagggtgataacctcgatagttacgtctcaatccatccccgtgacagttgtgccagttattacaaaatcgacggcgaaccaactgaggaggca |
106 |
Q |
| |
|
||||||||||| ||| | ||||||||||| ||||| | ||||| || | |||||||||||||| || || |||||||| |||| ||||| | |||| |
|
|
| T |
19030469 |
tcctcagcaggatgaaaccctcgatagttgcgtcttagcccatctccagggcagttgtgccagttgttgcagaatcgacgacgaattaactggaggggca |
19030370 |
T |
|
| Q |
107 |
ggaatcttttgtaccagcctgaaacgaagcggaaacgggtgtccccgcctgttatctctctgcgatagcgcgcaac |
182 |
Q |
| |
|
| || || || ||||||||| |||||||||| || ||| ||||| || ||||| || |||||||| ||| |||| |
|
|
| T |
19030369 |
gcaacctcttataccagcctaaaacgaagcgaaagtgggaatcccctcccgttatttccctgcgataacgcacaac |
19030294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0107 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0107
Description:
Target: scaffold0107; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 9280 - 9340
Alignment:
| Q |
249 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
|||||||||||||| | ||| ||||| || ||| |||| ||||||||||||||||||||| |
|
|
| T |
9280 |
aagcgccctcagcatgatatcaaagtagagtgcgctcacggagccggcatccatagcattc |
9340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 249 - 309
Target Start/End: Original strand, 384862 - 384922
Alignment:
| Q |
249 |
aagcgccctcagcagtacatcgaagtacagggcggtcacagagccggcatccatagcattc |
309 |
Q |
| |
|
||||||||||| || ||||| ||||| || || |||||||||||||||||||||||||| |
|
|
| T |
384862 |
aagcgccctcaacatgacatcaaagtagagctcgctcacagagccggcatccatagcattc |
384922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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