View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7207_low_5 (Length: 375)

Name: NF7207_low_5
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7207_low_5
NF7207_low_5
[»] chr4 (2 HSPs)
chr4 (18-369)||(37409921-37410274)
chr4 (210-263)||(51046399-51046452)
[»] chr5 (7 HSPs)
chr5 (218-286)||(10842625-10842693)
chr5 (211-299)||(6522148-6522235)
chr5 (220-297)||(38779441-38779518)
chr5 (221-261)||(38752631-38752671)
chr5 (221-266)||(38752571-38752616)
chr5 (236-300)||(38048862-38048926)
chr5 (220-264)||(38726818-38726862)
[»] chr1 (3 HSPs)
chr1 (221-299)||(34372457-34372535)
chr1 (221-262)||(37855003-37855044)
chr1 (205-262)||(28027049-28027106)
[»] chr8 (2 HSPs)
chr8 (211-299)||(11319333-11319420)
chr8 (209-301)||(43304345-43304437)
[»] chr6 (3 HSPs)
chr6 (221-273)||(4999903-4999955)
chr6 (216-270)||(33832808-33832862)
chr6 (312-354)||(1664210-1664252)
[»] chr7 (1 HSPs)
chr7 (212-283)||(49058861-49058931)
[»] chr2 (1 HSPs)
chr2 (313-341)||(37278080-37278108)


Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 369
Target Start/End: Complemental strand, 37410274 - 37409921
Alignment:
Q  18 gttctttgtttttgtgatcggattttgattagatgcagttaaaatatcatgtgagttgcctcatcttgatccgatgactaagatcattaaccacacaata 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37410274 gttctttgtttttgtgatcggatttggattagatgcagttaaaatatcatgtgagttgcctcatcttgatccgatgactaagatcattaaccacacaata 37410175  T
Q  118 ttttggcgacaaacaacctaaataatttattgttgcgtatggctcattgtttactaataaatgaccaggtagctcgagctggcgccccgctatagttcag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  37410174 ttttggcgacaaacaacctaaataatttattgttgcgtatggctcattgtttactaataaatgaccaggtagctcgagctggcgccccgctataggtcag 37410075  T
Q  218 gagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtactgtaccgctttgcagtcag 317  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||    
T  37410074 gagtaatcttgtaaattggaccgtagtatttaaaaacaaattgtaatatgtaaactctaagcttgaatagtataaaggtaccgtaccgctttgcagtcag 37409975  T
Q  318 agac--agacacaattggccgaactctgggatcaaatctgcgtgttcttctcac 369  Q
    ||||  || |||||||||||||||||||||||||||||||| ||||||| ||||    
T  37409974 agacataggcacaattggccgaactctgggatcaaatctgcatgttcttatcac 37409921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 263
Target Start/End: Original strand, 51046399 - 51046452
Alignment:
Q  210 tagttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaa 263  Q
    ||||| ||||||||||||||||| ||||||| ||||||| || ||| |||||||    
T  51046399 tagtttaggagtaatcttgtaaaatggaccgcagtatttgaacacatgttgtaa 51046452  T

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Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 10842693 - 10842625
Alignment:
Q  218 gagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaata 286  Q
    |||||| ||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||    
T  10842693 gagtaaccttataaattggaccgtagtatttaaacacaaattgtaatatgtaaatcctaagcttgaata 10842625  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 211 - 299
Target Start/End: Complemental strand, 6522235 - 6522148
Alignment:
Q  211 agttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtact 299  Q
    |||||||| ||| ||||||||| | |||||||||||||||| |||||||||||| ||||||| ||||| ||||||| || |||||||||    
T  6522235 agttcagg-gtagtcttgtaaactagaccgtagtatttaaacacaagttgtaatttgtaaatcctaagtttgaataatagaaaggtact 6522148  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 38779441 - 38779518
Alignment:
Q  220 gtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggta 297  Q
    ||||||||||||| ||||| |||||||||||| |||||||||| |||| |||  |||||||||| || || |||||||    
T  38779441 gtaatcttgtaaactggactgtagtatttaaacacaagttgtactatgcaaaccctaagcttgagtaatagaaaggta 38779518  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 261
Target Start/End: Complemental strand, 38752671 - 38752631
Alignment:
Q  221 taatcttgtaaattggaccgtagtatttaaaaacaagttgt 261  Q
    |||||||||||||||||| |||||||||||| |||||||||    
T  38752671 taatcttgtaaattggactgtagtatttaaacacaagttgt 38752631  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 221 - 266
Target Start/End: Complemental strand, 38752616 - 38752571
Alignment:
Q  221 taatcttgtaaattggaccgtagtatttaaaaacaagttgtaatat 266  Q
    ||||| ||||||||||||||||||||||||| | || |||||||||    
T  38752616 taatcatgtaaattggaccgtagtatttaaataaaatttgtaatat 38752571  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 236 - 300
Target Start/End: Original strand, 38048862 - 38048926
Alignment:
Q  236 gaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtactg 300  Q
    |||| ||||||||||| |||||||||||| |||||| ||| | |||||||| || ||| ||||||    
T  38048862 gaccatagtatttaaacacaagttgtaatctgtaaactcttaacttgaataatagaaatgtactg 38048926  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 264
Target Start/End: Complemental strand, 38726862 - 38726818
Alignment:
Q  220 gtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaat 264  Q
    ||||| |||||| |||||||| |||||||||| ||||||||||||    
T  38726862 gtaattttgtaatttggaccgaagtatttaaacacaagttgtaat 38726818  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 221 - 299
Target Start/End: Complemental strand, 34372535 - 34372457
Alignment:
Q  221 taatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtact 299  Q
    |||||||||||| |||| ||||||||||||| |||||||||| | ||||||  ||||||||||||| || || ||||||    
T  34372535 taatcttgtaaactggatcgtagtatttaaatacaagttgtactttgtaaaccctaagcttgaataatagaagggtact 34372457  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 221 - 262
Target Start/End: Original strand, 37855003 - 37855044
Alignment:
Q  221 taatcttgtaaattggaccgtagtatttaaaaacaagttgta 262  Q
    ||||||| ||||||||||||||||||||||||||| ||||||    
T  37855003 taatcttataaattggaccgtagtatttaaaaacatgttgta 37855044  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Complemental strand, 28027106 - 28027049
Alignment:
Q  205 cgctatagttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgta 262  Q
    |||||| ||||| | |||| |||||||| || ||||||||||||||| ||||||||||    
T  28027106 cgctatggttcaagggtaaccttgtaaactgaaccgtagtatttaaacacaagttgta 28027049  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 211 - 299
Target Start/End: Original strand, 11319333 - 11319420
Alignment:
Q  211 agttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtact 299  Q
    |||||||  |||| ||||||||| | ||||| ||||||||  |||||||||||| |||||| |||||||||||||| || |||||||||    
T  11319333 agttcagcggtaaccttgtaaat-gaaccgtcgtatttaagcacaagttgtaatctgtaaactctaagcttgaataatagaaaggtact 11319420  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 43304437 - 43304345
Alignment:
Q  209 atagttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttgaatagtataaaggtactgt 301  Q
    |||||||| | ||||||||||||| ||||   || |||||||| |||||||||| | | ||||  ||||| ||||||| || |||||||||||    
T  43304437 atagttcacgggtaatcttgtaaactggattttactatttaaacacaagttgtactttataaaccctaagtttgaatattagaaaggtactgt 43304345  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 221 - 273
Target Start/End: Complemental strand, 4999955 - 4999903
Alignment:
Q  221 taatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaatt 273  Q
    ||||||||||||||||||||||||||||||| | ||||||||  |||||||||    
T  4999955 taatcttgtaaattggaccgtagtatttaaatataagttgtaccatgtaaatt 4999903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 270
Target Start/End: Complemental strand, 33832862 - 33832808
Alignment:
Q  216 aggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaa 270  Q
    ||||||||||||||||||| |||||||||||||||| |||  |||||||| ||||    
T  33832862 aggagtaatcttgtaaattagaccgtagtatttaaacacacattgtaatacgtaa 33832808  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 354
Target Start/End: Complemental strand, 1664252 - 1664210
Alignment:
Q  312 agtcagagacagacacaattggccgaactctgggatcaaatct 354  Q
    ||||||||||||||||||||||||||||||   ||||||||||    
T  1664252 agtcagagacagacacaattggccgaactccatgatcaaatct 1664210  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 283
Target Start/End: Complemental strand, 49058931 - 49058861
Alignment:
Q  212 gttcaggagtaatcttgtaaattggaccgtagtatttaaaaacaagttgtaatatgtaaattctaagcttga 283  Q
    |||||||  ||||||||||||||||||||||||| ||||| |||||| ||| |||||| |  ||||||||||    
T  49058931 gttcagggataatcttgtaaattggaccgtagta-ttaaacacaagtcgtactatgtacaccctaagcttga 49058861  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 341
Target Start/End: Original strand, 37278080 - 37278108
Alignment:
Q  313 gtcagagacagacacaattggccgaactc 341  Q
    |||||||||||||||||||||||||||||    
T  37278080 gtcagagacagacacaattggccgaactc 37278108  T

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