View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7207_low_8 (Length: 321)
Name: NF7207_low_8
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 314
Target Start/End: Original strand, 6927378 - 6927675
Alignment:
| Q |
22 |
tcttcagcaaaagctggtaccatagcttatgcatgtatacaggtacttgatccctttaataatttctcaggaaactaaccatataactaaattattttgt |
121 |
Q |
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| T |
6927378 |
tcttcagcaaaagctggtaccatagcttatgcatgtatacaggtacttgatccctttaataatttctcaggaaactaaccatataactaaattattttgt |
6927477 |
T |
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| Q |
122 |
ctaaactttatttgttacattgaataataggttccgtttaccttgttgggagccattttgatggacaagtctggaagaaaacctcttataacagtaatat |
221 |
Q |
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| T |
6927478 |
ctaaactttatttgttacattgaataataggttccgtttaccttgttgggagccattttgatggacaagtctggaagaaaacctcttataacagtaatat |
6927577 |
T |
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| Q |
222 |
ttgcaaa-----cacatatcaactatttctgcatgaaaagggaatgagagatttaggtttaacaaaagtaattgttgtataattgcaggtctctgcta |
314 |
Q |
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| T |
6927578 |
ttgcaaaagctttatatatcaactacgtctgcatgaaaagggaatgagagatttaggtttaacaaaagtaattgttgtataattgcaggtctctgcta |
6927675 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 219
Target Start/End: Original strand, 49133708 - 49133760
Alignment:
| Q |
167 |
ttgggagccattttgatggacaagtctggaagaaaacctcttataacagtaat |
219 |
Q |
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| T |
49133708 |
ttgggagccattttgatggataaatctggaagaagaccacttataacggtaat |
49133760 |
T |
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