View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7207_low_9 (Length: 295)
Name: NF7207_low_9
Description: NF7207
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7207_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 43092526 - 43092729
Alignment:
| Q |
1 |
ttataattatttgtctttttccattaataaccataataatttaatatattgtatcatacatttatctctgcagtgaataactaaaagtaacattgataaa |
100 |
Q |
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| T |
43092526 |
ttataattatttgtccttttccattaataaccttaataatttaatatattgtatcatacatttatctctgcagtgaataactaaaagtaacattgataaa |
43092625 |
T |
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| Q |
101 |
ataacaatggatgtttcattaaactttaaaatcaatgaatagataagaacatattttttctgcaaatgcgacaaaagaaacacaatcaagataactatgc |
200 |
Q |
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| T |
43092626 |
ataacaatggatgtttcattaaactttaaaattaatgaatagataagaacatattttttctgcaaatgagacaaaagaaacacaatcaaaataactatgc |
43092725 |
T |
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| Q |
201 |
caat |
204 |
Q |
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|||| |
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| T |
43092726 |
caat |
43092729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 43092747 - 43092807
Alignment:
| Q |
221 |
ttataatgataattttggtcaaaatgtc-----aaactgtatagattcattgagacctgtg |
276 |
Q |
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| T |
43092747 |
ttataatgataattttggtcaaaatgtcaaactaaactgtatagattcgttgagacctgtg |
43092807 |
T |
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