View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7208_high_1 (Length: 757)

Name: NF7208_high_1
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7208_high_1
NF7208_high_1
[»] chr6 (12 HSPs)
chr6 (362-753)||(372584-372975)
chr6 (1-165)||(373172-373336)
chr6 (196-304)||(373033-373141)
chr6 (219-293)||(14321623-14321697)
chr6 (245-293)||(256755-256803)
chr6 (391-435)||(9402512-9402556)
chr6 (391-434)||(34346136-34346179)
chr6 (391-463)||(8320887-8320960)
chr6 (389-480)||(10925518-10925610)
chr6 (641-690)||(14479939-14479988)
chr6 (649-690)||(29095223-29095264)
chr6 (240-293)||(30236597-30236650)
[»] chr8 (15 HSPs)
chr8 (389-479)||(17108297-17108388)
chr8 (389-481)||(39379653-39379745)
chr8 (389-474)||(6388586-6388672)
chr8 (371-461)||(29918508-29918601)
chr8 (679-748)||(34658604-34658673)
chr8 (390-480)||(5793507-5793598)
chr8 (391-438)||(28345414-28345461)
chr8 (397-479)||(35747265-35747346)
chr8 (395-439)||(8545466-8545510)
chr8 (391-462)||(36274966-36275037)
chr8 (218-293)||(39379841-39379916)
chr8 (219-283)||(8545622-8545687)
chr8 (641-690)||(22906402-22906451)
chr8 (391-436)||(30903969-30904014)
chr8 (540-569)||(36919688-36919717)
[»] chr5 (12 HSPs)
chr5 (219-293)||(35583868-35583942)
chr5 (389-481)||(12457438-12457531)
chr5 (397-463)||(457465-457532)
chr5 (391-462)||(35584040-35584111)
chr5 (659-741)||(10494245-10494327)
chr5 (568-602)||(15394239-15394273)
chr5 (391-480)||(17153092-17153182)
chr5 (649-683)||(31477585-31477619)
chr5 (393-445)||(7350518-7350571)
chr5 (228-293)||(16311538-16311603)
chr5 (240-293)||(29664743-29664796)
chr5 (393-481)||(40187731-40187820)
[»] chr2 (10 HSPs)
chr2 (219-293)||(34544575-34544649)
chr2 (220-294)||(29656998-29657072)
chr2 (244-293)||(31601029-31601078)
chr2 (389-460)||(13531871-13531943)
chr2 (391-461)||(30696848-30696919)
chr2 (427-481)||(11958975-11959030)
chr2 (392-480)||(17845466-17845556)
chr2 (391-438)||(35248499-35248546)
chr2 (649-690)||(19092675-19092716)
chr2 (391-436)||(25210301-25210346)
[»] chr7 (6 HSPs)
chr7 (228-293)||(30999752-30999817)
chr7 (394-450)||(11472817-11472874)
chr7 (245-293)||(19440274-19440322)
chr7 (242-293)||(11472974-11473025)
chr7 (386-437)||(30999906-30999957)
chr7 (667-757)||(32053874-32053965)
[»] chr4 (17 HSPs)
chr4 (379-474)||(25265229-25265326)
chr4 (391-481)||(8843879-8843970)
chr4 (391-481)||(8856843-8856934)
chr4 (219-293)||(12075895-12075969)
chr4 (221-291)||(17113268-17113338)
chr4 (389-462)||(36306712-36306786)
chr4 (399-480)||(21956890-21956971)
chr4 (391-463)||(33616208-33616281)
chr4 (391-436)||(39086085-39086130)
chr4 (395-480)||(42907820-42907905)
chr4 (396-479)||(16575046-16575130)
chr4 (392-450)||(37384203-37384262)
chr4 (362-437)||(55783404-55783479)
chr4 (362-437)||(55847586-55847661)
chr4 (219-269)||(21957099-21957149)
chr4 (634-708)||(25781822-25781895)
chr4 (393-481)||(35304591-35304680)
[»] chr3 (6 HSPs)
chr3 (391-480)||(27252490-27252580)
chr3 (377-437)||(27937646-27937708)
chr3 (219-269)||(30905056-30905106)
chr3 (572-603)||(38870594-38870625)
chr3 (397-438)||(3385974-3386015)
chr3 (393-438)||(3414651-3414696)
[»] scaffold0244 (1 HSPs)
scaffold0244 (391-438)||(4698-4745)
[»] scaffold0158 (1 HSPs)
scaffold0158 (655-730)||(27329-27404)
[»] chr1 (4 HSPs)
chr1 (389-438)||(13692566-13692615)
chr1 (420-481)||(5290371-5290434)
chr1 (656-690)||(24107011-24107045)
chr1 (240-293)||(48125928-48125981)
[»] scaffold1322 (2 HSPs)
scaffold1322 (394-476)||(1037-1120)
scaffold1322 (219-289)||(863-933)


Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 362 - 753
Target Start/End: Complemental strand, 372975 - 372584
Alignment:
Q  362 tgggtatcgtctgatagattgagactcattgtgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacatt 461  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  372975 tgggtatcgtctgatagattgagactcattgtgtgtgtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacatt 372876  T
Q  462 catgatgagtttgggtatgaatacagggttgatattttgaaagtatgcatcgagataaatcgaacaacatctaatgtctatatttatatattaattaaaa 561  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||  ||||||||||||||||||||||||    
T  372875 catgatgagtttgggtatgaatacagggttgatattttgaaagtatgtatcgagacaaatcgaacaacatctaacatctatatttatatattaattaaaa 372776  T
Q  562 atatggttgatcgtacctgatcagaaggtgactaccgacgcgatgcttgatggtggttgtatatgcttgatattgactagaacggcggggggttgtgtac 661  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||    
T  372775 atatggttgatcgtacctgatcagaaggtgactaccgacgcgatgcttgatggtggttgtatatgcttgctattgactagaacggcggggggttgtatac 372676  T
Q  662 ctgctgacactccgacgctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaatattggggactgctaagaatccc 753  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  372675 ctgctgacactctgacgctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaatattggggactgctaagaatccc 372584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 1e-80
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 373336 - 373172
Alignment:
Q  1 tcaattttaatcaatttttcatgccttgatatagcacatgatattagaaacgacaataggacgtcgagtggggcgagttttgcttttctcatccccatat 100  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  373336 tcaattttaatcaatttttcgtgccttgttatagcacatgatattagaaacgacaataggacgtcgagtggggcgagttttgcttttctcatccccatat 373237  T
Q  101 catactctcatatactcaactggaatgagaaatcaaatcttatctccgttccgacgggtttgagt 165  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  373236 catactctcatatactcaactggaatgagaaatcaaatcttatctccgtcccgacgggtttgagt 373172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 5e-52
Query Start/End: Original strand, 196 - 304
Target Start/End: Complemental strand, 373141 - 373033
Alignment:
Q  196 caatgaatattttcttaataacaaaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactatat 295  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  373141 caatgaatattttcttaataaaaaaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactatat 373042  T
Q  296 acggtgatg 304  Q
    |||||||||    
T  373041 acggtgatg 373033  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 14321623 - 14321697
Alignment:
Q  219 aaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||| ||||||||  | | |||||||||||||||| |||| || |||  ||||||||||||||||||||||    
T  14321623 aaaagtatttttcagccttgagtgcaatgttgtaatgcaatattgaataaagagatgatgacgatcaatgactat 14321697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 256803 - 256755
Alignment:
Q  245 atgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    ||||||||||||||||| || ||||  ||||||||||||||||||||||    
T  256803 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgactat 256755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 435
Target Start/End: Original strand, 9402512 - 9402556
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaa 435  Q
    |||||||||||||||||||||| ||| | ||||||||||||||||    
T  9402512 tgtgtgagtgaaatgatttagggtttgggtttctatttatataaa 9402556  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 434
Target Start/End: Complemental strand, 34346179 - 34346136
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataa 434  Q
    |||||||||||||||||||||| ||| | |||||||||||||||    
T  34346179 tgtgtgagtgaaatgatttagggtttgggtttctatttatataa 34346136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 8320960 - 8320887
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagga-taataagttgactttttacattca 463  Q
    ||||| |||||||||||||||| ||||  ||||||||||  |||| ||| ||||||||||| ||||| ||||||    
T  8320960 tgtgtaagtgaaatgatttagggtttaagtttctatttacgtaaatggagtaataagttgattttttgcattca 8320887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 389 - 480
Target Start/End: Complemental strand, 10925610 - 10925518
Alignment:
Q  389 attgtgtgagtgaaatgatttaggattt-agatttctatttatataaaagg-ataataagttgactttttacattcatgatgagtttgggtatg 480  Q
    ||||||| |||||||||||||||| ||| ||| |||||||||||||||||| ||||||| ||   |||||||||||   |||||||| ||||||    
T  10925610 attgtgttagtgaaatgatttagggtttcaga-ttctatttatataaaaggaataataaattatttttttacattcggaatgagtttaggtatg 10925518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Original strand, 14479939 - 14479988
Alignment:
Q  641 gaacggcggggggttgtgtacctgctgacactccgacgctcaaatcagta 690  Q
    ||||||||||||| ||||||||||| | |||||||||||| || ||||||    
T  14479939 gaacggcgggggggtgtgtacctgcaggcactccgacgctgaagtcagta 14479988  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 690
Target Start/End: Complemental strand, 29095264 - 29095223
Alignment:
Q  649 gggggttgtgtacctgctgacactccgacgctcaaatcagta 690  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||    
T  29095264 ggggggtgtgtacctgcagacactccgacgctcaagtcagta 29095223  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 30236650 - 30236597
Alignment:
Q  240 gcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||||||||||| |||||||||||||  ||| ||| ||||| ||||||||    
T  30236650 gcgcaatgttgtaatgtattattcaacaaagagataatggcgatcgatgactat 30236597  T

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Target: chr8 (Bit Score: 48; Significance: 5e-18; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 389 - 479
Target Start/End: Original strand, 17108297 - 17108388
Alignment:
Q  389 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattcatgatgagtttgggtat 479  Q
    |||||||||||||||| ||||||| ||||  ||||||||||||||||| ||||||||| |||| |||||||| ||  |||||||||||||||    
T  17108297 attgtgtgagtgaaattatttagggtttaagtttctatttatataaaatggataataaattgattttttacaatcgggatgagtttgggtat 17108388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 389 - 481
Target Start/End: Complemental strand, 39379745 - 39379653
Alignment:
Q  389 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatga 481  Q
    ||||||| |||||||||||||| ||||| |||||||||||||| | ||||||||||| |||| ||  |||||||  || ||||||| ||||||    
T  39379745 attgtgtaagtgaaatgatttaagatttggatttctatttatacagaaggataataaattgatttactacattcgggacgagtttgagtatga 39379653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 474
Target Start/End: Complemental strand, 6388672 - 6388586
Alignment:
Q  389 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattcatgatgagtttg 474  Q
    |||||||||||||||||||||||| ||| | ||||| ||||||||||| || |||||| |||| ||| |||||||| |||| |||||    
T  6388672 attgtgtgagtgaaatgatttagggtttgggtttctgtttatataaaatgggtaataaattgattttctacattcaggatgggtttg 6388586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 371 - 461
Target Start/End: Original strand, 29918508 - 29918601
Alignment:
Q  371 tctgatagattgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttatataaaag-gataataagttgactttttacatt 461  Q
    ||||| ||||||||||||  | |||||||||||||||||||||| |||   |||||||||||||||||| | |||||| |||| ||||||||||    
T  29918508 tctgaaagattgagactctaactgtgtgagtgaaatgatttagggtttgagtttctatttatataaaagaggtaataaattgattttttacatt 29918601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 679 - 748
Target Start/End: Complemental strand, 34658673 - 34658604
Alignment:
Q  679 ctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaatattggggactgctaaga 748  Q
    ||||| |||||||||| | |||| |||||| || |||| ||||||||||||| |||||||||||||||||    
T  34658673 ctcaagtcagtattgagtcagaaagggggttgaaagaaataagagattctaacattggggactgctaaga 34658604  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 390 - 480
Target Start/End: Original strand, 5793507 - 5793598
Alignment:
Q  390 ttgtgtgagtgaaatgatttaggatttagatttctatttatat-aaaaggataataagttgactttttacattcatgatgagtttgggtatg 480  Q
    ||||||||||||||||||||||| |||   ||||||||||||| |||| |||||| | |||| |||||||||| | || ||||||| |||||    
T  5793507 ttgtgtgagtgaaatgatttagggtttgagtttctatttatataaaaatgataattaattgattttttacatttaggacgagtttgagtatg 5793598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 391 - 438
Target Start/End: Original strand, 28345414 - 28345461
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 438  Q
    ||||||||||||||||||||| |||| | |||||||||||||||||||    
T  28345414 tgtgtgagtgaaatgatttagaatttcggtttctatttatataaaagg 28345461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 397 - 479
Target Start/End: Complemental strand, 35747346 - 35747265
Alignment:
Q  397 agtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtat 479  Q
    |||||||||||||||| || || |||||||||||||||| || |||||  |||| |||  |||||||||||| ||||||||||    
T  35747346 agtgaaatgatttaggtttgag-tttctatttatataaaggggtaatagattgattttcaacattcatgatgggtttgggtat 35747265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 395 - 439
Target Start/End: Complemental strand, 8545510 - 8545466
Alignment:
Q  395 tgagtgaaatgatttaggatttagatttctatttatataaaagga 439  Q
    |||||||||||||||||| ||| ||||||| ||||||||||||||    
T  8545510 tgagtgaaatgatttagggtttggatttctgtttatataaaagga 8545466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 36274966 - 36275037
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattc 462  Q
    ||||||||||||||||||||||  || | ||||||||||||||||| ||||| ||| |||| |||||||||||    
T  36274966 tgtgtgagtgaaatgatttagg-gttgggtttctatttatataaaagggatagtaaattgattttttacattc 36275037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 218 - 293
Target Start/End: Complemental strand, 39379916 - 39379841
Alignment:
Q  218 aaaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    ||||| ||| |||||||| ||  | ||||||||||||||||||| |||||||  ||||||| | ||||||||||||    
T  39379916 aaaaaatatttttcagcctcgaacacaatgttgtaatgcattatccaacaaagagatgatgtcaatcaatgactat 39379841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 219 - 283
Target Start/End: Complemental strand, 8545687 - 8545622
Alignment:
Q  219 aaaagtatatttcagccac-gtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgat 283  Q
    |||||||| |||||||| | | ||| |||||||||||||||||| |||||||  ||||||||||||    
T  8545687 aaaagtatttttcagcccccgagcgtaatgttgtaatgcattatccaacaaagagatgatgacgat 8545622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 690
Target Start/End: Complemental strand, 22906451 - 22906402
Alignment:
Q  641 gaacggcggggggttgtgtacctgctgacactccgacgctcaaatcagta 690  Q
    ||||||||| ||| ||||||||||  ||||||||||||||||| ||||||    
T  22906451 gaacggcggaggggtgtgtacctgaagacactccgacgctcaagtcagta 22906402  T

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Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 30903969 - 30904014
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa 436  Q
    |||||||||||||||||||| | ||| | |||||||||||||||||    
T  30903969 tgtgtgagtgaaatgatttaaggttttggtttctatttatataaaa 30904014  T

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Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 540 - 569
Target Start/End: Complemental strand, 36919717 - 36919688
Alignment:
Q  540 tatatttatatattaattaaaaatatggtt 569  Q
    ||||||||||||||||||||||||||||||    
T  36919717 tatatttatatattaattaaaaatatggtt 36919688  T

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Target: chr5 (Bit Score: 47; Significance: 2e-17; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 219 - 293
Target Start/End: Original strand, 35583868 - 35583942
Alignment:
Q  219 aaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||| ||||||||||| |||||||||||||||||||||| |||||||  ||||| ||||||| ||||||||    
T  35583868 aaaagtatttttcagccacgagcgcaatgttgtaatgcattatccaacaaagagatgacgacgatcgatgactat 35583942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 389 - 481
Target Start/End: Original strand, 12457438 - 12457531
Alignment:
Q  389 attgtgtgagtgaaatgatttaggatttagatttctatttata-taaaaggataataagttgactttttacattcatgatgagtttgggtatga 481  Q
    |||||||||||||||||||||||  ||||| |||||||||||| |||| || |||||| |||| ||| |||||||  || | ||||||||||||    
T  12457438 attgtgtgagtgaaatgatttagactttaggtttctatttatattaaaggggtaataaattgattttctacattcgggacgggtttgggtatga 12457531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 397 - 463
Target Start/End: Complemental strand, 457532 - 457465
Alignment:
Q  397 agtgaaatgatttaggatttagatttctatttatataaaagg-ataataagttgactttttacattca 463  Q
    |||||||||||||||||||| | |||||||||||||||||||  |||||| |||| ||| ||||||||    
T  457532 agtgaaatgatttaggattttggtttctatttatataaaaggtgtaataaattgattttatacattca 457465  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 462
Target Start/End: Original strand, 35584040 - 35584111
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattc 462  Q
    ||||||||  |||||||||||| |||   ||||||||||||||||||| |||||| |||| ||| |||||||    
T  35584040 tgtgtgagcaaaatgatttagggtttgagtttctatttatataaaagggtaataaattgattttgtacattc 35584111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 659 - 741
Target Start/End: Complemental strand, 10494327 - 10494245
Alignment:
Q  659 tacctgctgacactccgacgctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaatattggggact 741  Q
    ||||||| |||||||||||||| || |||||||||| | |||| |||||| |||||| | |  |||||||||  |||||||||    
T  10494327 tacctgcagacactccgacgcttaagtcagtattgactcagaaagggggttgagagagtaagaagattctaaccttggggact 10494245  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 568 - 602
Target Start/End: Original strand, 15394239 - 15394273
Alignment:
Q  568 ttgatcgtacctgatcagaaggtgactaccgacgc 602  Q
    |||||||||| ||||||||||||||||||||||||    
T  15394239 ttgatcgtacttgatcagaaggtgactaccgacgc 15394273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 391 - 480
Target Start/End: Original strand, 17153092 - 17153182
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatata-aaaggataataagttgactttttacattcatgatgagtttgggtatg 480  Q
    |||||||||||||| ||||||| ||| ||||||||||||| || || || |||||| |||| ||| |||||||  || | |||||||||||    
T  17153092 tgtgtgagtgaaattatttaggttttggatttctatttatctagaaggggtaataaattgattttctacattcgggacgggtttgggtatg 17153182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 649 - 683
Target Start/End: Complemental strand, 31477619 - 31477585
Alignment:
Q  649 gggggttgtgtacctgctgacactccgacgctcaa 683  Q
    ||||||||||||||||| |||||||||||||||||    
T  31477619 gggggttgtgtacctgcagacactccgacgctcaa 31477585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 445
Target Start/End: Complemental strand, 7350571 - 7350518
Alignment:
Q  393 tgtgagtgaaatgatttaggatttagatttctatttatataaaag-gataataa 445  Q
    ||||||| |||||||||||| ||| |||| ||||||||||||||| ||||||||    
T  7350571 tgtgagtaaaatgatttagggtttcgattactatttatataaaagcgataataa 7350518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 228 - 293
Target Start/End: Complemental strand, 16311603 - 16311538
Alignment:
Q  228 tttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||| || |||||||||||||||| |||||  ||||||  ||||||||||||| ||| ||||    
T  16311603 tttcagccccgagcgcaatgttgtaatgaattatcaaacaaagagatgatgacgatcgatggctat 16311538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 293
Target Start/End: Original strand, 29664743 - 29664796
Alignment:
Q  240 gcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||||||||||||||||| || |||   ||||||||||||| ||||||||    
T  29664743 gcgcaatgttgtaatgcattatccagcaacaagatgatgacgatcgatgactat 29664796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 481
Target Start/End: Complemental strand, 40187820 - 40187731
Alignment:
Q  393 tgtgagtgaaatgatttaggatttagatttctatttatataaaag-gataataagttgactttttacattcatgatgagtttgggtatga 481  Q
    ||||||| ||||||||||||||||  ||| ||||||||||||||| | |||||| || | ||| || ||||  || ||||||||||||||    
T  40187820 tgtgagtaaaatgatttaggattttcattactatttatataaaagaggtaataaattaattttctatattcgggacgagtttgggtatga 40187731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 2e-17; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 34544649 - 34544575
Alignment:
Q  219 aaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||| |||||||| || |||||||||||||||||||||| |||||||  ||||| ||||||||||||||||    
T  34544649 aaaagtatttttcagccccgagcgcaatgttgtaatgcattatccaacaaagagatgacgacgatcaatgactat 34544575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 220 - 294
Target Start/End: Complemental strand, 29657072 - 29656998
Alignment:
Q  220 aaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactata 294  Q
    ||||||| |||||||| || |||||||||||||||||||||| ||  |||  ||||||||||||| |||||||||    
T  29657072 aaagtatttttcagccccgagcgcaatgttgtaatgcattatccaggaaagagatgatgacgatcgatgactata 29656998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 244 - 293
Target Start/End: Complemental strand, 31601078 - 31601029
Alignment:
Q  244 aatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||||||||||||| |||||||  ||||||||||||||||||||||    
T  31601078 aatgttgtaatgcattatccaacaaagagatgatgacgatcaatgactat 31601029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 389 - 460
Target Start/End: Original strand, 13531871 - 13531943
Alignment:
Q  389 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacat 460  Q
    |||||||||||||||||||||||| |||   ||||||||||||||||| ||||||||| |||| ||| |||||    
T  13531871 attgtgtgagtgaaatgatttagggtttgagtttctatttatataaaatggataataaattgattttctacat 13531943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 391 - 461
Target Start/End: Original strand, 30696848 - 30696919
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacatt 461  Q
    ||||||||||| |||||||||| |||  |||||||||||||||||| || |||||| |||| ||||||||||    
T  30696848 tgtgtgagtgacatgatttagggtttgaatttctatttatataaaatgggtaataaattgattttttacatt 30696919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 427 - 481
Target Start/End: Original strand, 11958975 - 11959030
Alignment:
Q  427 ttatataaaag-gataataagttgactttttacattcatgatgagtttgggtatga 481  Q
    ||||||||||| | |||||| |||| ||| ||||||||||||||||||||||||||    
T  11958975 ttatataaaagaggtaataaattgattttatacattcatgatgagtttgggtatga 11959030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 480
Target Start/End: Complemental strand, 17845556 - 17845466
Alignment:
Q  392 gtgtgagtgaaatgatttaggatttaga-tttctatttatat-aaaaggataataagttga-ctttttacattcatgatgagtttgggtatg 480  Q
    ||||||||||||||||||||| ||| || ||||||||||||| ||||||||||||| ||||  |||||||||||  || | |||||||||||    
T  17845556 gtgtgagtgaaatgatttagg-tttggagtttctatttatataaaaaggataataaattgatttttttacattcgagacgggtttgggtatg 17845466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 391 - 438
Target Start/End: Complemental strand, 35248546 - 35248499
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 438  Q
    |||||||||||||||||||||| |||   |||||||||||||||||||    
T  35248546 tgtgtgagtgaaatgatttagggtttcattttctatttatataaaagg 35248499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 649 - 690
Target Start/End: Original strand, 19092675 - 19092716
Alignment:
Q  649 gggggttgtgtacctgctgacactccgacgctcaaatcagta 690  Q
    ||||||||||||||||| |||||||| |||||||| ||||||    
T  19092675 gggggttgtgtacctgcagacactccaacgctcaagtcagta 19092716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 25210301 - 25210346
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa 436  Q
    |||||||||||||||||||||| |||   |||||||||||||||||    
T  25210301 tgtgtgagtgaaatgatttagggtttgagtttctatttatataaaa 25210346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 8e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 228 - 293
Target Start/End: Original strand, 30999752 - 30999817
Alignment:
Q  228 tttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||||| ||||||||||||||||| ||||| |||||||  ||||||||||||||||||||||    
T  30999752 tttcagccacttgcgcaatgttgtaatgtattatccaacaaaaagatgatgacgatcaatgactat 30999817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 394 - 450
Target Start/End: Complemental strand, 11472874 - 11472817
Alignment:
Q  394 gtgagtgaaatgatttaggatttagatttctatttatataaaagg-ataataagttga 450  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||| ||||||| ||||    
T  11472874 gtgagtgaaatgatttagggttttggtttctatttatataaaaggtataataaattga 11472817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 245 - 293
Target Start/End: Complemental strand, 19440322 - 19440274
Alignment:
Q  245 atgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    ||||||||||||||||| || ||||  ||||||||||||||||||||||    
T  19440322 atgttgtaatgcattatccagcaaatagatgatgacgatcaatgactat 19440274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 242 - 293
Target Start/End: Complemental strand, 11473025 - 11472974
Alignment:
Q  242 gcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||||||||| ||||| |||||||  ||||||||||||| ||||||||    
T  11473025 gcaatgttgtaatgtattatccaacaaagagatgatgacgatcgatgactat 11472974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 386 - 437
Target Start/End: Original strand, 30999906 - 30999957
Alignment:
Q  386 ctcattgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 437  Q
    ||||||||| || |||||| || |||||||| ||||||||||||||||||||    
T  30999906 ctcattgtgcgaatgaaattatgtaggatttggatttctatttatataaaag 30999957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 667 - 757
Target Start/End: Original strand, 32053874 - 32053965
Alignment:
Q  667 gacactccgacgctcaaatcagtattgaatgagaatggggg-tagagagaattaagagattctaatattggggactgctaagaatccctttt 757  Q
    |||||||||||| |||| | |||||||| ||||| |||||| ||| |||| ||||||||||||||  ||||| |||||| ||| ||| ||||    
T  32053874 gacactccgacgttcaagttagtattgagtgagagtggggggtagtgagagttaagagattctaactttgggcactgctgagagtccttttt 32053965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 379 - 474
Target Start/End: Complemental strand, 25265326 - 25265229
Alignment:
Q  379 attgagactc--attgtgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttg 474  Q
    ||||||||||  ||||||||||| ||||||||||| ||||   |||||||||||||| ||||||||||| |||| ||| |||||||  ||||||||||    
T  25265326 attgagactctgattgtgtgagtaaaatgatttagaatttgagtttctatttatatagaaggataataaattgattttctacattcgagatgagtttg 25265229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 8843970 - 8843879
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatat-aaaaggataataagttgactttttacattcatgatgagtttgggtatga 481  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||| || |||||| || | ||| |||||||| || | ||||||||||||    
T  8843970 tgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatga 8843879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 391 - 481
Target Start/End: Complemental strand, 8856934 - 8856843
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatat-aaaaggataataagttgactttttacattcatgatgagtttgggtatga 481  Q
    |||||||||||||||||||||||||||  ||||||||||||| ||| || |||||| || | ||| |||||||| || | ||||||||||||    
T  8856934 tgtgtgagtgaaatgatttaggatttaagtttctatttatatgaaaggggtaataaattaattttctacattcacgacgggtttgggtatga 8856843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 12075969 - 12075895
Alignment:
Q  219 aaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    |||||||| ||||| || || ||||| |||||||||||||||| |||||||  ||||||||||||||||| ||||    
T  12075969 aaaagtatttttcaacctcgagcgcattgttgtaatgcattatccaacaaagagatgatgacgatcaatggctat 12075895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 221 - 291
Target Start/End: Complemental strand, 17113338 - 17113268
Alignment:
Q  221 aagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgact 291  Q
    |||||| ||| |||| || || |||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  17113338 aagtattttttagccccgagcacaatgttgtaatgcattattcaacaaagagattatgacgatcaatgact 17113268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 389 - 462
Target Start/End: Original strand, 36306712 - 36306786
Alignment:
Q  389 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattc 462  Q
    ||||||| |||||||||||||| ||||| ||||||||||||||||||| || |||||| |||| ||| |||||||    
T  36306712 attgtgtaagtgaaatgatttatgatttcgatttctatttatataaaaggggtaataaattgattttctacattc 36306786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 21956971 - 21956890
Alignment:
Q  399 tgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatg 480  Q
    |||||||||||||| ||| | ||| ||||||||||||||| |||||| |||| ||| ||||||| | | |||||||||||||    
T  21956971 tgaaatgatttagggtttgggtttttatttatataaaagggtaataaattgattttctacattcgtaacgagtttgggtatg 21956890  T

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Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 391 - 463
Target Start/End: Complemental strand, 33616281 - 33616208
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattca 463  Q
    |||||||||||||||||||||| ||| ||||| ||||||||||||| || |||||| |||| ||| ||||||||    
T  33616281 tgtgtgagtgaaatgatttagggttttgatttttatttatataaaaggggtaataaattgattttctacattca 33616208  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 391 - 436
Target Start/End: Original strand, 39086085 - 39086130
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa 436  Q
    |||||||||||||||||||||| ||||  |||||||||||||||||    
T  39086085 tgtgtgagtgaaatgatttagggtttaagtttctatttatataaaa 39086130  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 395 - 480
Target Start/End: Original strand, 42907820 - 42907905
Alignment:
Q  395 tgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattcatgatgagtttgggtatg 480  Q
    |||||||||||||||||| |||   ||||||||||||||||||  || ||| |||| ||| |||||||  || |||||||||||||    
T  42907820 tgagtgaaatgatttagggtttgagtttctatttatataaaagagtagtaaattgattttctacattcgggacgagtttgggtatg 42907905  T

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Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 396 - 479
Target Start/End: Original strand, 16575046 - 16575130
Alignment:
Q  396 gagtgaaatgatttaggatttagatttctatttata-taaaaggataataagttgactttttacattcatgatgagtttgggtat 479  Q
    ||||||||||||||| |||||   |||||||||||| ||||||| |||||| || | |||||||||| | || ||||||||||||    
T  16575046 gagtgaaatgatttatgatttgagtttctatttatattaaaagggtaataaattaattttttacatttaagacgagtttgggtat 16575130  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 392 - 450
Target Start/End: Original strand, 37384203 - 37384262
Alignment:
Q  392 gtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttga 450  Q
    ||||||||||||||||||||| |||  | |||||||||||||||| ||||||||| ||||    
T  37384203 gtgtgagtgaaatgatttagggtttgaacttctatttatataaaagggataataaattga 37384262  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 55783404 - 55783479
Alignment:
Q  362 tgggtatcgtctgatagattgagactcattgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 437  Q
    ||||| ||||||||||||||||  || | | || |||||||||||||||||||||   |||||||| |||||||||    
T  55783404 tgggtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaaag 55783479  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 55847586 - 55847661
Alignment:
Q  362 tgggtatcgtctgatagattgagactcattgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 437  Q
    ||||| ||||||||||||||||  || | | || |||||||||||||||||||||   |||||||| |||||||||    
T  55847586 tgggtgtcgtctgatagattgactctaactttgagagtgaaatgatttaggatttgagtttctattcatataaaag 55847661  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 21957149 - 21957099
Alignment:
Q  219 aaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaa 269  Q
    |||||||| |||||||| | || |||||||||||||||||||| |||||||    
T  21957149 aaaagtatttttcagcctcatgtgcaatgttgtaatgcattatccaacaaa 21957099  T

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Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 634 - 708
Target Start/End: Complemental strand, 25781895 - 25781822
Alignment:
Q  634 ttgactagaacggcggggggttgtgtacctgctgacactccgacgctcaaatcagtattgaatgagaatgggggt 708  Q
    |||||||||||||| | |||| |||||||||| |||||||||||||||||  ||||||   || |||||||||||    
T  25781895 ttgactagaacggcagagggt-gtgtacctgcagacactccgacgctcaagccagtatgagatcagaatgggggt 25781822  T

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Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 481
Target Start/End: Complemental strand, 35304680 - 35304591
Alignment:
Q  393 tgtgagtgaaatgatttaggatttagatttctatttatataaaaggataataagttgactttttacattc-atgatgagtttgggtatga 481  Q
    |||| ||||||||||||||  |||   ||||| ||||||||||||| |||||| |||| ||  |||||||  ||||||||||||||||||    
T  35304680 tgtgggtgaaatgatttagagtttgagtttctttttatataaaagggtaataaattgatttcctacattctttgatgagtttgggtatga 35304591  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 391 - 480
Target Start/End: Original strand, 27252490 - 27252580
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattcatgatgagtttgggtatg 480  Q
    |||||||||||||||||||| ||||| | ||||||||||||||||| || |||||| ||||  || |||||||| | ||||||||||||||    
T  27252490 tgtgtgagtgaaatgatttatgattttggtttctatttatataaaatgggtaataaattgaaattctacattcagggtgagtttgggtatg 27252580  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 377 - 437
Target Start/End: Original strand, 27937646 - 27937708
Alignment:
Q  377 agattgagactca--ttgtgtgagtgaaatgatttaggatttagatttctatttatataaaag 437  Q
    |||||||||||||  | ||||||||||||||||||||| ||||| ||||||||||||||||||    
T  27937646 agattgagactcaaatcgtgtgagtgaaatgatttagggtttaggtttctatttatataaaag 27937708  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 30905106 - 30905056
Alignment:
Q  219 aaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaa 269  Q
    |||||||| ||||| || || ||||||||||||||||||||||||||||||    
T  30905106 aaaagtatttttcaaccccgagcgcaatgttgtaatgcattattcaacaaa 30905056  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 572 - 603
Target Start/End: Original strand, 38870594 - 38870625
Alignment:
Q  572 tcgtacctgatcagaaggtgactaccgacgcg 603  Q
    ||||||||||||||||||||||||||||||||    
T  38870594 tcgtacctgatcagaaggtgactaccgacgcg 38870625  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 397 - 438
Target Start/End: Complemental strand, 3386015 - 3385974
Alignment:
Q  397 agtgaaatgatttaggatttagatttctatttatataaaagg 438  Q
    |||||||||||||||||||| ||||| |||||||| ||||||    
T  3386015 agtgaaatgatttaggatttcgatttttatttatagaaaagg 3385974  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 393 - 438
Target Start/End: Complemental strand, 3414696 - 3414651
Alignment:
Q  393 tgtgagtgaaatgatttaggatttagatttctatttatataaaagg 438  Q
    |||||||||||||||||||| ||| ||||| |||||||| ||||||    
T  3414696 tgtgagtgaaatgatttagggtttcgatttttatttatagaaaagg 3414651  T

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Target: scaffold0244 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 391 - 438
Target Start/End: Complemental strand, 4745 - 4698
Alignment:
Q  391 tgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 438  Q
    |||||||||||||||||||||  ||| |||||||||||||||||||||    
T  4745 tgtgtgagtgaaatgatttagagttttgatttctatttatataaaagg 4698  T

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Target: scaffold0158 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0158
Description:

Target: scaffold0158; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 655 - 730
Target Start/End: Original strand, 27329 - 27404
Alignment:
Q  655 tgtgtacctgctgacactccgacgctcaaatcagtattgaatgagaatgggggtagagagaattaagagattctaa 730  Q
    |||||||||||  ||| ||||||||||||||||||||| | | |||| ||| || |||||| ||||||||||||||    
T  27329 tgtgtacctgcaaacattccgacgctcaaatcagtattcagttagaaagggtgttgagagagttaagagattctaa 27404  T

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Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 389 - 438
Target Start/End: Original strand, 13692566 - 13692615
Alignment:
Q  389 attgtgtgagtgaaatgatttaggatttagatttctatttatataaaagg 438  Q
    |||||||| ||||||||||||||| ||| | |||||||||||||||||||    
T  13692566 attgtgtgggtgaaatgatttagggttttggtttctatttatataaaagg 13692615  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 481
Target Start/End: Complemental strand, 5290434 - 5290371
Alignment:
Q  420 tttctatttatataaaag-gataataagttgactt-tttacattcatgatgagtttgggtatga 481  Q
    |||||||||||||||||| |||||||| |||| || ||||||||||||| ||||||| ||||||    
T  5290434 tttctatttatataaaagagataataatttgatttatttacattcatgacgagtttgtgtatga 5290371  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 656 - 690
Target Start/End: Complemental strand, 24107045 - 24107011
Alignment:
Q  656 gtgtacctgctgacactccgacgctcaaatcagta 690  Q
    |||||||||||||||||||||||||||| ||||||    
T  24107045 gtgtacctgctgacactccgacgctcaagtcagta 24107011  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 240 - 293
Target Start/End: Complemental strand, 48125981 - 48125928
Alignment:
Q  240 gcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatgactat 293  Q
    ||||||||||||||| |||||  || ||||  ||||||||||||||||||||||    
T  48125981 gcgcaatgttgtaatacattaaccagcaaagagatgatgacgatcaatgactat 48125928  T

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Target: scaffold1322 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: scaffold1322
Description:

Target: scaffold1322; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 394 - 476
Target Start/End: Original strand, 1037 - 1120
Alignment:
Q  394 gtgagtgaaatgatttaggatttagatttctatttatataaaa-ggataataagttgactttttacattcatgatgagtttggg 476  Q
    ||||||||||||||||| |||||   ||||||||||||||||| || |||||| || | ||| ||||||||||| | |||||||    
T  1037 gtgagtgaaatgatttaagatttgagtttctatttatataaaatgggtaataaattaattttctacattcatgacgggtttggg 1120  T

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Target: scaffold1322; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 219 - 289
Target Start/End: Original strand, 863 - 933
Alignment:
Q  219 aaaagtatatttcagccacgtgcgcaatgttgtaatgcattattcaacaaaccgatgatgacgatcaatga 289  Q
    |||||||| ||||||||  | | |||||||||||||||| ||||||| |||  ||||| ||||||||||||    
T  863 aaaagtatttttcagccttgagtgcaatgttgtaatgcaatattcaataaagagatgacgacgatcaatga 933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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