View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7208_high_15 (Length: 229)
Name: NF7208_high_15
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_high_15 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 4 - 165
Target Start/End: Original strand, 20725796 - 20725957
Alignment:
| Q |
4 |
tattctagtttaggcctattttgaccttttattctatgatagaaatccttagccctacctcaaaacaatggccacaaaagcttcccctcccacctccctc |
103 |
Q |
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| T |
20725796 |
tattctagtttaggcctattttgaccttttattctatgatagaaatccttagccctacctcaaaacaatggccacaaaagcttcccctcccacctccctc |
20725895 |
T |
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| Q |
104 |
tttttatttgtttctgggttaggatacatttcactcctataaagtaagtatcaatttcattt |
165 |
Q |
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| T |
20725896 |
tttttatttgtttctgggttaggatacatttcactcctataaagtaagtatcaatttcattt |
20725957 |
T |
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Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 170 - 229
Target Start/End: Original strand, 20726003 - 20726062
Alignment:
| Q |
170 |
cctatacgcaaaatactataaccctataatttcaatactgacaaaatggcacaatcctaa |
229 |
Q |
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| T |
20726003 |
cctatacgtaaaatactataaccctataatttcaatactgacaaaatggcacaatcctaa |
20726062 |
T |
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