View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7208_high_6 (Length: 359)

Name: NF7208_high_6
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7208_high_6
NF7208_high_6
[»] chr3 (10 HSPs)
chr3 (18-359)||(23017401-23017742)
chr3 (36-162)||(23033194-23033320)
chr3 (262-359)||(23036509-23036606)
chr3 (273-359)||(23140385-23140471)
chr3 (262-359)||(23039380-23039477)
chr3 (273-359)||(23024611-23024697)
chr3 (262-356)||(23146262-23146356)
chr3 (262-344)||(23033053-23033135)
chr3 (273-359)||(23149097-23149183)
chr3 (100-160)||(50552920-50552980)
[»] chr6 (2 HSPs)
chr6 (265-359)||(21780152-21780246)
chr6 (61-137)||(32863449-32863525)
[»] scaffold0554 (1 HSPs)
scaffold0554 (262-359)||(6318-6415)
[»] chr8 (2 HSPs)
chr8 (78-160)||(41317780-41317862)
chr8 (60-144)||(43124224-43124307)
[»] chr7 (1 HSPs)
chr7 (105-160)||(37697521-37697576)
[»] chr4 (1 HSPs)
chr4 (71-160)||(34207849-34207938)
[»] chr5 (1 HSPs)
chr5 (61-109)||(43537591-43537639)


Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 18 - 359
Target Start/End: Complemental strand, 23017742 - 23017401
Alignment:
Q  18 ctttgaagtagtctccatttactttccatgtatcatgtttttgtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaatttta 117  Q
    |||||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23017742 ctttgaagtagtgtccatttactttccatgttccatgtttttgtatacatcgtagaatatagattcaatatttctctcaccatttccttttacaatttta 23017643  T
Q  118 aaaaagagattcagcattttaagaaatatcgaaaatgtcaaaatacaggtttatttatttatgaaaatatagcattatatgaatcttctccctatcacta 217  Q
    ||||||||||||| ||||| ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23017642 aaaaagagattcaacatttgaagaaatatggaaaacgtcaaaatacaggtttatttatttatgaaaatatagcattatatgaatcttctccctatcacta 23017543  T
Q  218 ctacacaaatatctccttaaacatccttcgattagcttgacctaatagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccat 317  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||     
T  23017542 ctacagaaatatctctttaaatatccttcgattagcttgacctaatagctacttttcaggacattttcggtggtggaggtgagacatcagcaagcaccac 23017443  T
Q  318 agattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  23017442 agattgggcaatgatagaaatgataaggaatccaagaataat 23017401  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 36 - 162
Target Start/End: Complemental strand, 23033320 - 23033194
Alignment:
Q  36 ttactttccatgtatcatgtttttgtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcatt 135  Q
    ||||||||||||| ||||||||||||||||||| ||||||||||||||| | ||||||||||||||| ||||||||| ||| ||||| ||||||| ||||    
T  23033320 ttactttccatgtttcatgtttttgtaaacatcatagaatatagattcagtgtttctctcaccattttcttttacaagttttaaaaacagattcaacatt 23033221  T
Q  136 ttaagaaatatcgaaaatgtcaaaata 162  Q
    || |||||| | ||||| || ||||||    
T  23033220 tttagaaattttgaaaacgttaaaata 23033194  T

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Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 23036606 - 23036509
Alignment:
Q  262 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    |||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||  ||||||| |||||||||||||||||||    
T  23036606 atagctacttttcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaggaatccaagaataat 23036509  T

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Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 23140471 - 23140385
Alignment:
Q  273 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    |||||||||||| | || |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  23140471 tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatgataagggatccaagaataat 23140385  T

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Target: chr3; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 262 - 359
Target Start/End: Complemental strand, 23039477 - 23039380
Alignment:
Q  262 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    |||||||||| ||||||| |||| | || |||||||||||||||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||    
T  23039477 atagctacttttcaggacgtttttggtgctggaggtgagacatcagcaagcaccatagactgggcaatggtagaaatgataagggatccaagaataat 23039380  T

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Target: chr3; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 23024697 - 23024611
Alignment:
Q  273 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    |||||||||||| | || ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| |||||||||||||||    
T  23024697 tcaggacatttttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggcagaaatggtaaagaatccaagaataat 23024611  T

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Target: chr3; HSP #7
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 262 - 356
Target Start/End: Complemental strand, 23146356 - 23146262
Alignment:
Q  262 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaat 356  Q
    ||||||||||  ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||| || ||| | ||||||||||    
T  23146356 atagctactttacaggacatttttgctgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaattggtaaaggatccaagaat 23146262  T

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Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 262 - 344
Target Start/End: Complemental strand, 23033135 - 23033053
Alignment:
Q  262 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataag 344  Q
    |||||||||| |||||||||||| | || |||||| ||||||||||||||||||||||||||||| |||| ||||||||||||    
T  23033135 atagctacttttcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcgatgacagaaatgataag 23033053  T

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Target: chr3; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 273 - 359
Target Start/End: Complemental strand, 23149183 - 23149097
Alignment:
Q  273 tcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    |||||||||||| | || |||||| ||||||||||||||||||||||||||||||||| |||| ||| ||| | |||||||||||||    
T  23149183 tcaggacatttttggtgctggaggcgagacatcagcaagcaccatagattgggcaatggtagagatggtaaaggatccaagaataat 23149097  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 160
Target Start/End: Original strand, 50552920 - 50552980
Alignment:
Q  100 tttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 160  Q
    |||||||||||||||||  |||| ||||  ||||||||||||||| | |||||||||||||    
T  50552920 tttccttttacaatttttgaaaatagatctagcattttaagaaattttgaaaatgtcaaaa 50552980  T

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Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 265 - 359
Target Start/End: Complemental strand, 21780246 - 21780152
Alignment:
Q  265 gctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    ||||||| ||||||||| || | || |||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||||||||    
T  21780246 gctacttttcaggacatgtttggtgctggaggtgagacatcagcaagcaccatagattgggcaatggtagaaatggtaagggatccaagaataat 21780152  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 61 - 137
Target Start/End: Original strand, 32863449 - 32863525
Alignment:
Q  61 taaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcatttt 137  Q
    |||||||  |||||||||||||||||| |  |||||||||||||||||||| || | ||||| ||||||| ||||||    
T  32863449 taaacatgatagaatatagattcaatactcttctcaccatttccttttacagttgttaaaaacagattcaacatttt 32863525  T

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Target: scaffold0554 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0554
Description:

Target: scaffold0554; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 262 - 359
Target Start/End: Original strand, 6318 - 6415
Alignment:
Q  262 atagctacttctcaggacattttcgctggtggaggtgagacatcagcaagcaccatagattgggcaatgatagaaatgataaggaatccaagaataat 359  Q
    |||||||||| | |||||||||| | || ||||||||| |||||||||| |||||||||||||||||||  ||||||||||||| | |||||||||||    
T  6318 atagctactttttaggacatttttggtgctggaggtgatacatcagcaaccaccatagattgggcaatggcagaaatgataagggagccaagaataat 6415  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 160
Target Start/End: Original strand, 41317780 - 41317862
Alignment:
Q  78 agattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 160  Q
    |||| |||||||||||||||||||| ||||||||||||| ||||| | ||  |||| ||||| |||||| |||||||||||||    
T  41317780 agatccaatatttctctcaccattttcttttacaattttcaaaaacaaatcaagcaatttaaaaaatattgaaaatgtcaaaa 41317862  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Original strand, 43124224 - 43124307
Alignment:
Q  60 gtaaacatcgtagaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaat 144  Q
    ||||||||  ||||||||| || ||||||||||||  ||||||| |||||||||||| | ||| ||||| |||||||| ||||||    
T  43124224 gtaaacataatagaatatatatccaatatttctctttccatttc-ttttacaatttttataaacagatttagcattttcagaaat 43124307  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 105 - 160
Target Start/End: Complemental strand, 37697576 - 37697521
Alignment:
Q  105 ttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 160  Q
    ||||||||||||  |||| |||||||||| |||||||||| | |||||||||||||    
T  37697576 ttttacaattttttaaaatagattcagcagtttaagaaattttgaaaatgtcaaaa 37697521  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 160
Target Start/End: Original strand, 34207849 - 34207938
Alignment:
Q  71 agaatatagattcaatatttctctcaccatttccttttacaattttaaaaaagagattcagcattttaagaaatatcgaaaatgtcaaaa 160  Q
    ||||||||||| ||||||||| |||| |||||  ||||||||| ||  |||| ||||  || ||||| |||||||| ||||||| |||||    
T  34207849 agaatatagatccaatatttccctcagcattttattttacaatatttgaaaatagatctagaatttttagaaatattgaaaatgccaaaa 34207938  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 61 - 109
Target Start/End: Original strand, 43537591 - 43537639
Alignment:
Q  61 taaacatcgtagaatatagattcaatatttctctcaccatttcctttta 109  Q
    ||||||| | |||||||||||| ||||||| ||||||||||| ||||||    
T  43537591 taaacataggagaatatagatttaatatttttctcaccattttctttta 43537639  T

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