View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7208_high_9 (Length: 299)
Name: NF7208_high_9
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 282
Target Start/End: Original strand, 13212753 - 13213034
Alignment:
| Q |
1 |
gaccgtcacactttccatgatgtcacatccatttgcaacttccatcacgtgggatcggagtgcgttcgcgctgtccctcgtgatgatgataggtggtttt |
100 |
Q |
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| T |
13212753 |
gaccgtcacactttccatgatgtcacatccatttgcaacttccatcacgtgggatcggagtgcgttcgcgctgtccctcgtgatgatgataggtggtttt |
13212852 |
T |
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| Q |
101 |
ggtttgtttttcgaacctgctggtcttcctcttggtcttcttcccatctcaccaccacttcctccaccagcacttccgctaccgccgtcgtcttttcctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
13212853 |
ggtttgtttttcgaacctgctggtcttcctcttggtcttcttcccatctcaccaccacttcctccaccagcacttccgctaccaccgtcgtcttttcctt |
13212952 |
T |
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| Q |
201 |
ctcctccggtgggagtgttgttgccgtcttcgttgtttcgttctcttttttggcctcggcttaagctcccattgccactttg |
282 |
Q |
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| T |
13212953 |
ctcctccggtgggagtgttgttgccgtcttcgttgtttcgttctcttttttggcctcggcttaagctcccattgccactttg |
13213034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 3332356 - 3332436
Alignment:
| Q |
62 |
gcgttcgcgctgtccctcgtgatgatgataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttctt |
142 |
Q |
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| T |
3332356 |
gcgtttgcgctgtcacgtgtgatgataatcggtggttttggtttgtttttggatccagctggtcttcctcttggtcttctt |
3332436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 92 - 140
Target Start/End: Complemental strand, 16578665 - 16578617
Alignment:
| Q |
92 |
ggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
140 |
Q |
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| T |
16578665 |
ggtggttttggtttgttttttgaaccgggtggtcttcctcttggtcttc |
16578617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 32803226 - 32803278
Alignment:
| Q |
88 |
gataggtggttttggtttgtttttcgaacctgctggtcttcctcttggtcttc |
140 |
Q |
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| T |
32803226 |
gataggtggttttggtctgtttttggatccaggtggtcttcctcttggtcttc |
32803278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 111
Target Start/End: Complemental strand, 46200969 - 46200932
Alignment:
| Q |
74 |
tccctcgtgatgatgataggtggttttggtttgttttt |
111 |
Q |
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| T |
46200969 |
tcccttgtgatgataataggtggttttggtttgttttt |
46200932 |
T |
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