View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7208_low_10 (Length: 340)
Name: NF7208_low_10
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 6697885 - 6697558
Alignment:
| Q |
1 |
aacacgaatcgaacaactaaattacttgtgaagattagtaaccccgtctccgtcaatatttggattcttcgcagaaaagataattttatttcttgagtcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
6697885 |
aacacgaatcgaacaactaaattacttgtgaagattagtaaccccgtctccgtcaatatttggattcttcgcagaaaagataattctatttcttaagtcc |
6697786 |
T |
|
| Q |
101 |
caaattttttagaccgttgtttgccaaattcacattagccctttccgatgcttaaaattagaggagtagaaataatcaaagagaatgataatgtttacgg |
200 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6697785 |
caaattttttagactgttgtttgccaaattcacattagccctttccgatgcttaaaattagaggagtagaaataatcaaagagaatgataatgtttacgg |
6697686 |
T |
|
| Q |
201 |
gtaaaatcatacccgtagactcacctacttgaaaatatgataccaaaccgatccggcaaaaccacacctataaaaaagatgatcttcctcctttatcatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6697685 |
gtaaaatcatacccgtagactcacctacttgaaaatatgataccaaaccgatccggcaaaaccacacctataaaaaagatgatcttcctcctttatcatt |
6697586 |
T |
|
| Q |
301 |
cccacacaccaagcacaatctgatgtcc |
328 |
Q |
| |
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| T |
6697585 |
cccacacaccaagcacaatccgatgtcc |
6697558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 320
Target Start/End: Original strand, 34666623 - 34666850
Alignment:
| Q |
98 |
tcccaaattttttagaccgttgtttgccaaattcacattagcccttt-ccgatgcttaaaattagaggag------tagaaataatcaaagagaatgata |
190 |
Q |
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| T |
34666623 |
tcccaaattttccagaccgttgtttgccaaattaacattaaaccttttccgatgtttgaaattagaagaggatgaatataaataatcagagagagtgata |
34666722 |
T |
|
| Q |
191 |
atgtttacgggtaaaatcatacccgtagactcacctacttgaaaatatgataccaaaccgatccggcaaaaccacacctataaaaaagatgatcttcctc |
290 |
Q |
| |
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|||||| | ||||||| | ||| || || |||| |||||||||||||| |||||| |||| ||||||||||| || || ||||||||||||||||||| |
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| T |
34666723 |
atgtttctgagtaaaattacacc--tatacccaccaacttgaaaatatgacaccaaatcgatgcggcaaaaccatacatacaaaaaagatgatcttcctc |
34666820 |
T |
|
| Q |
291 |
ctttatcattcccacacaccaagcacaatc |
320 |
Q |
| |
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| ||||||| |||||||| || ||||||| |
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| T |
34666821 |
ttctatcatttccacacactaaacacaatc |
34666850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 229 - 320
Target Start/End: Complemental strand, 12870413 - 12870321
Alignment:
| Q |
229 |
ttgaaaatatgataccaaaccgatccggcaaaaccacacctataaaaa-agatgatcttcctcctttatcattcccacacaccaagcacaatc |
320 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||| |||| || ||||| ||||||| |||||| | |||||||| |||||||||| ||||||| |
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|
| T |
12870413 |
ttgaaaatatgatacctaaccgaaccggcaaaactacacatacaaaaagagatgatattcctcttctatcattcacacacaccaaacacaatc |
12870321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 300
Target Start/End: Original strand, 5891076 - 5891154
Alignment:
| Q |
222 |
cacctacttgaaaatatgataccaaaccgatccggcaaaaccacacctataaaaaagatgatcttcctcctttatcatt |
300 |
Q |
| |
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|||| |||||||||||||||||||||| || |||||||| |||||||| |||| ||| | ||| |||| |||| |||| |
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| T |
5891076 |
cacccacttgaaaatatgataccaaactgaatcggcaaaatcacacctacaaaagagacggtctgcctcttttaccatt |
5891154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 320
Target Start/End: Complemental strand, 24609285 - 24609196
Alignment:
| Q |
231 |
gaaaatatgataccaaaccgatccggcaaaaccacacctataaaaaa-gatgatcttcctcctttatcattcccacacaccaagcacaatc |
320 |
Q |
| |
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|||||||||||| |||||| |||| ||| | ||||||||| |||||| ||||||| ||||| | ||||| ||||||| ||||| ||||||| |
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| T |
24609285 |
gaaaatatgataacaaaccaatccagcaga-ccacacctacaaaaaaagatgatcgtcctcttctatcaatcccacataccaaacacaatc |
24609196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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