View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7208_low_11 (Length: 335)
Name: NF7208_low_11
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 301; Significance: 1e-169; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 320
Target Start/End: Original strand, 7391281 - 7391585
Alignment:
| Q |
16 |
acatcatttgcttaacaccatttttataatgattcattttgctttgaacttttaagcatgtcaactgctttgcttcatatgtattgagttgaattatgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7391281 |
acatcatttgcttaacaccatttttataatgattcattttgctttgaacttttaagcatgtcaactgctttgcttcatatgtattgagttgaattatgga |
7391380 |
T |
|
| Q |
116 |
tgagttcttttttctccatcataagttgacataattattgaaaatgacacaatcataagtatataatacttttgtggtaagcatagctttcctcttctat |
215 |
Q |
| |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7391381 |
tgagttcttttttctccatcacaagttgacataattattgaaaatgacacaatcataagtatataatacttttgtggtaagcatagctttcctcttctat |
7391480 |
T |
|
| Q |
216 |
ctcataattgaatttccttcttactataatatgagtaaatgcggtgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7391481 |
ctcataattgaatttccttcttactataatatgagtaaatgcggtgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
7391580 |
T |
|
| Q |
316 |
gatgt |
320 |
Q |
| |
|
||||| |
|
|
| T |
7391581 |
gatgt |
7391585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 19585831 - 19585527
Alignment:
| Q |
16 |
acatcatttgcttaacaccatttttataatgattcattttgctttgaacttttaagcatgtcaactgctttgcttcatatgtattgagttgaattatgga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
19585831 |
acatcatttgcttaacaccatttttataatgattcattttgctttgaacttttaagcatgtaaactgctttgcttcatatgtattgagttgaattatgga |
19585732 |
T |
|
| Q |
116 |
tgagttcttttttctccatcataagttgacataattattgaaaatgacacaatcataagtatataatacttttgtggtaagcatagctttcctcttctat |
215 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19585731 |
tgagttcttttttctccatcaaaagttgacataattattgaaaatgacacaatcataagtatataatacttttgtggtaagcatagctttcctcttctat |
19585632 |
T |
|
| Q |
216 |
ctcataattgaatttccttcttactataatatgagtaaatgcggtgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
19585631 |
ctcataattgaatttccttcttactataatatgagtaaatgcggtgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
19585532 |
T |
|
| Q |
316 |
gatgt |
320 |
Q |
| |
|
||||| |
|
|
| T |
19585531 |
gatgt |
19585527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 125
Target Start/End: Original strand, 17833489 - 17833574
Alignment:
| Q |
40 |
tataatgattcattttgctttgaacttttaagcatgtcaactgctttgcttcatatgtattgagttgaattatggatgagttcttt |
125 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||||| ||| |||||| |||| ||||||| |||||||||||| ||||||||||| |
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|
| T |
17833489 |
tataatgattcattttgatttgaatttttatgcatgttaacagctttgtttcagatgtattaagttgaattatgaatgagttcttt |
17833574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 11657564 - 11657260
Alignment:
| Q |
16 |
acatcatttgcttaacaccatttttataatgattcattttgctttgaacttttaagcatgtcaactgctttgcttcatatgtattgagttgaattatgga |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
11657564 |
acatcatttgcttaacaccatttttataatgattcattttgctttgaacttttaagcatgttaactgctttgcttcatatgtattgagttgaattatgga |
11657465 |
T |
|
| Q |
116 |
tgagttcttttttctccatcataagttgacataattattgaaaatgacacaatcataagtatataatacttttgtggtaagcatagctttcctcttctat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11657464 |
tgagttcttttttctccatcataagttgacataattattgaaaatgacacaatcataagtatataatacttttgtggtaagcatagctttcctcttctat |
11657365 |
T |
|
| Q |
216 |
ctcataattgaatttccttcttactataatatgagtaaatgcggtgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
315 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11657364 |
ctcataactgaatttccttcttactataatatgagtaaatgcggtgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
11657265 |
T |
|
| Q |
316 |
gatgt |
320 |
Q |
| |
|
||||| |
|
|
| T |
11657264 |
gatgt |
11657260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 16 - 320
Target Start/End: Complemental strand, 50233630 - 50233327
Alignment:
| Q |
16 |
acatcatttgcttaacaccatttttataatgattcattttgctttgaacttttaagcatgtcaactgctttgcttcatatgtattgagttgaattatgga |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||| |||||| |||||| |
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|
| T |
50233630 |
acatcatttgcttaacaccatttttataataattcattttgctttgaacttttaaacatgttaactgctttgcttcatatgtattaggttgaaatatgga |
50233531 |
T |
|
| Q |
116 |
tgagttcttttttctccatcataagttgacataattattgaaaatgacacaatcataagtatataatacttttgtggtaagcatagctttcctcttctat |
215 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
50233530 |
tgagttcttttttcttcatcataagtt-acataatggttgaaaatgacacaatcataagtatataatactttcgtggtaagcatagctttcctcttctat |
50233432 |
T |
|
| Q |
216 |
ctcataattgaatttccttcttactataatatgagtaaatgcggtgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
315 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50233431 |
ctcataattgaatttccttcctactataatatgagtaaatgcggcgtactttccttttctcttgcaggcagaggtacttggtgttgatccaagagaagtt |
50233332 |
T |
|
| Q |
316 |
gatgt |
320 |
Q |
| |
|
|||| |
|
|
| T |
50233331 |
aatgt |
50233327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 180 - 320
Target Start/End: Original strand, 36764235 - 36764375
Alignment:
| Q |
180 |
aatacttttgtggtaagcatagctttcctcttctatctcataattgaatttccttcttactataatatgagtaaatg-cggtgtactttccttttctctt |
278 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||||| | ||||| ||| ||||||||| |
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|
| T |
36764235 |
aatacttttgtggtaagcatagctctcctcttctatctcataattgaatttccttcctactattgtatgagtaaatgcctgtgta-tttttttttctctt |
36764333 |
T |
|
| Q |
279 |
gcaggcagaggtacttggtgttgatccaagagaagttgatgt |
320 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36764334 |
gcaggcagaggtacttggtgttgatccaagagacgttgatgt |
36764375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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