View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7208_low_12 (Length: 329)
Name: NF7208_low_12
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 53466934 - 53467256
Alignment:
| Q |
1 |
tctttatcaaaaccatggtagcagagctgatggttcaacgtatagggttcgatctgctccttatgttgaaagtcttcatgacatggtggtgagacaacat |
100 |
Q |
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| T |
53466934 |
tctttatcaaaaccatggtcgcagagctgatggttcaacgtatagggttcgatctgctccttatgttgaaagtcttcatgacatggtggtgagacaacat |
53467033 |
T |
|
| Q |
101 |
gtcctgttgagtatggtggtgcaagtatatataaaaagcatccatttgaggggggcatacacaaatgaatggatggatgacccacacttgagagggagat |
200 |
Q |
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| T |
53467034 |
gtcctgttgagcatggtggtgcaagtatatataaaaagcatcaatttgagggg-gcatacacaaatgaatggatggatgacccacacttgagagggagat |
53467132 |
T |
|
| Q |
201 |
tgttgtgtagcaagtgtgaggtagaagttcaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatgccttatgattttga |
300 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
53467133 |
tgttgtgtagcaagtgtgaggtagaagtccaacattagatgaaaaagtagcaatatataagtgagaggatgcataagcccccaatgccttaagattttga |
53467232 |
T |
|
| Q |
301 |
atgaaaatgtgatgtccatctcat |
324 |
Q |
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||||||||||| |||||| ||||| |
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| T |
53467233 |
atgaaaatgtggtgtccaactcat |
53467256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 45636047 - 45635976
Alignment:
| Q |
157 |
atacacaaatgaatggatggatgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
228 |
Q |
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| T |
45636047 |
atacccaaatgaatggatggatgactcacacttgagagggagattgttgtgtaccaagtgtgagatagaagt |
45635976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 228
Target Start/End: Complemental strand, 13154560 - 13154520
Alignment:
| Q |
188 |
ttgagagggagattgttgtgtagcaagtgtgaggtagaagt |
228 |
Q |
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| T |
13154560 |
ttgagaggaagattgttgtgtagcaagtatgagttagaagt |
13154520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 177 - 235
Target Start/End: Original strand, 42730284 - 42730342
Alignment:
| Q |
177 |
atgacccacacttgagagggagattgttgtgtagcaagtgtgaggtagaagttcaacat |
235 |
Q |
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||||| |||||||||| || ||||||||||||||||||| |||| ||||||||| |||| |
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| T |
42730284 |
atgactcacacttgaggggaagattgttgtgtagcaagtctgagttagaagttccacat |
42730342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 28483750 - 28483780
Alignment:
| Q |
198 |
gattgttgtgtagcaagtgtgaggtagaagt |
228 |
Q |
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| T |
28483750 |
gattgttgtgtagcaagtgtgaggtagaagt |
28483780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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