View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7208_low_16 (Length: 261)
Name: NF7208_low_16
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 15 - 244
Target Start/End: Original strand, 26935176 - 26935405
Alignment:
| Q |
15 |
ggacatcaggacaaggtgttaaggtaagtttctgtttggattagtttatttgaatttatctaccggattttagtgagaacttatgaaaacaacttataac |
114 |
Q |
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| T |
26935176 |
ggacttcaggacaaggtgttaaggtaaggttctgtttggattagtttatttgaatttatctaccggattttagtgagaacttatgaaaacaacttataac |
26935275 |
T |
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| Q |
115 |
atgtccactgttttcagtttacttggattatattaatacactttgactttgctatatcataagcacttatatgataagtgctcaaaccgtaaacgattat |
214 |
Q |
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| T |
26935276 |
atgtccactgttttcagtttacttggattatattaatacactttgactttactatatcataagcacttatatgataagtgctcaaaccgtaaacgactat |
26935375 |
T |
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| Q |
215 |
ttaagttgtatatcatagacaattgagctg |
244 |
Q |
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| T |
26935376 |
ttaagttgtttatcatagacaattgagctg |
26935405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 2487986 - 2488015
Alignment:
| Q |
89 |
gagaacttatgaaaacaacttataacatgt |
118 |
Q |
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| T |
2487986 |
gagaacttatgaaaacaacttataacatgt |
2488015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 94 - 131
Target Start/End: Original strand, 12518963 - 12519000
Alignment:
| Q |
94 |
cttatgaaaacaacttataacatgtccactgttttcag |
131 |
Q |
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| T |
12518963 |
cttatggaaacaacttatgacatgtccactgttttcag |
12519000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 32837415 - 32837383
Alignment:
| Q |
89 |
gagaacttatgaaaacaacttataacatgtcca |
121 |
Q |
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| T |
32837415 |
gagaacttatgaaaacagcttataacatgtcca |
32837383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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