View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7208_low_4 (Length: 409)
Name: NF7208_low_4
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_low_4 |
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| [»] scaffold0002 (3 HSPs) |
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| [»] scaffold0263 (1 HSPs) |
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Alignment Details
Target: scaffold0002 (Bit Score: 355; Significance: 0; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 17 - 391
Target Start/End: Original strand, 401552 - 401926
Alignment:
| Q |
17 |
catcaacattgtctggactgaagaaaggaatcttccaactggcgttgaaaattccggtgccttttccatcgacgtaagtctcatgggcaaagcccaaaat |
116 |
Q |
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| T |
401552 |
catcaacattgtctggaccaaagaaaggaatcttccaactggcgttgaaaattccggtgccttttccatcgacgtaagtctcatgggcaaagcccaaaat |
401651 |
T |
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| Q |
117 |
gaaatggaattcagggatgtggcggccgataatatcagctgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgact |
216 |
Q |
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| T |
401652 |
gaaatggaattcagggatgtggcggccgataatatcagctgggaaattatttaaagaatctgggtaggacttcacgccaatgtattctctaaaaatgact |
401751 |
T |
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| Q |
217 |
ggattcacatcattgtcaccgatgataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctatatg |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
401752 |
ggattcacatcattgtcaccgatgataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgttttttgtgttttctttatg |
401851 |
T |
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| Q |
317 |
ttggggtttagatagattggaatgagtaactctaatttatgcatgcccttttataaggctacttctccttcttaa |
391 |
Q |
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| T |
401852 |
ttggggtttagatagattggaatgagtaactctaatttatgcattcccttttataaggctacttctccttcttaa |
401926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 240 - 354
Target Start/End: Original strand, 405323 - 405438
Alignment:
| Q |
240 |
gataggagctgttgacattttggaggatcgatatatgagaaattaatatatactttgtttt-ttgtgttttctatatgttggggtttagatagattggaa |
338 |
Q |
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| T |
405323 |
gataggagctgttgacatttcggaggatcgatatatgagaaattaatatataatttctttttttgtgttttccatatgttggggtttagatagattggaa |
405422 |
T |
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| Q |
339 |
tgagtaactctaattt |
354 |
Q |
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| T |
405423 |
tgagtaactctaattt |
405438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 93525 - 93611
Alignment:
| Q |
156 |
tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat |
242 |
Q |
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| T |
93525 |
tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat |
93611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0263 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0263
Description:
Target: scaffold0263; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 242
Target Start/End: Original strand, 15355 - 15441
Alignment:
| Q |
156 |
tgggaaattatttaaagaatctgggtaggacttgacgccaatgtattctctaaaaatgactggattcacatcattgtcaccgatgat |
242 |
Q |
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| T |
15355 |
tgggaaattattaagagaagctgggtatggcttcacgccaatgtattctcgaaaaatgaatggatcaacagcattgtcaccgatgat |
15441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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