View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7208_low_5 (Length: 395)
Name: NF7208_low_5
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7208_low_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 237
Target Start/End: Original strand, 35095662 - 35095881
Alignment:
| Q |
18 |
ctttgtaacaaagaacgcccgcccaatttgcattatcagcattacatggaggcatggatgtattccatgaagataatgcaacgtcggtgttttgaagaga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35095662 |
ctttgtaacaaagaacgcccgcccaatttgcattatcagcattacatggaggcatggatgtattccatgaagataatgcaacgtcggtgttttgaagaga |
35095761 |
T |
|
| Q |
118 |
gtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatggtgccata |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35095762 |
gtttttaaatttaaggagagaatctatgtcagaaatacaataagcaatgttgatgagattaatagaaaagaagaaagtgatgaagaatgatggtgccata |
35095861 |
T |
|
| Q |
218 |
ataataaaatatagtgaagg |
237 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
35095862 |
ataataaaatatagtgaagg |
35095881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 288 - 383
Target Start/End: Original strand, 35095932 - 35096027
Alignment:
| Q |
288 |
ttaaggtgcggcgtgcagcgatagaaggaagatgagatgttactgaggttgatcaagaacagcaatggaaggtggagagagatggaattgcatatt |
383 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35095932 |
ttaaggtgcggcgtgcagcgctagaaggaagatgagatgttactgaggttgatcaagaacagctatggaaggtggagagagatggaattgcatatt |
35096027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University