View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7208_low_6 (Length: 367)

Name: NF7208_low_6
Description: NF7208
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7208_low_6
NF7208_low_6
[»] chr2 (12 HSPs)
chr2 (77-286)||(40994518-40994727)
chr2 (306-353)||(29896285-29896332)
chr2 (305-352)||(40994767-40994814)
chr2 (306-352)||(9547400-9547446)
chr2 (313-352)||(5028880-5028919)
chr2 (313-352)||(12126893-12126932)
chr2 (306-352)||(12599856-12599902)
chr2 (306-356)||(32957534-32957584)
chr2 (305-338)||(39340239-39340272)
chr2 (316-352)||(32407564-32407600)
chr2 (306-346)||(42451463-42451503)
chr2 (307-347)||(42886869-42886909)
[»] chr1 (18 HSPs)
chr1 (306-356)||(23979407-23979457)
chr1 (306-350)||(15670633-15670677)
chr1 (306-352)||(16924502-16924548)
chr1 (306-352)||(43356459-43356505)
chr1 (307-352)||(13401621-13401666)
chr1 (311-352)||(43611448-43611489)
chr1 (306-354)||(24571616-24571664)
chr1 (306-352)||(8269359-8269405)
chr1 (306-356)||(11410647-11410697)
chr1 (306-352)||(27533267-27533313)
chr1 (306-352)||(34899617-34899663)
chr1 (316-352)||(434337-434373)
chr1 (306-338)||(8872898-8872930)
chr1 (306-354)||(12214015-12214062)
chr1 (306-350)||(24978270-24978314)
chr1 (306-350)||(33382249-33382293)
chr1 (314-354)||(34083359-34083399)
chr1 (306-346)||(49196377-49196417)
[»] chr7 (16 HSPs)
chr7 (305-354)||(38780002-38780051)
chr7 (306-352)||(7994875-7994921)
chr7 (305-352)||(5526749-5526796)
chr7 (305-356)||(9522932-9522983)
chr7 (311-346)||(45151407-45151442)
chr7 (306-356)||(3671844-3671894)
chr7 (306-352)||(7388030-7388076)
chr7 (311-353)||(25251533-25251575)
chr7 (306-352)||(26920705-26920751)
chr7 (306-352)||(27833392-27833438)
chr7 (306-352)||(31414122-31414168)
chr7 (306-352)||(46849098-46849144)
chr7 (305-354)||(2622347-2622396)
chr7 (306-346)||(5579723-5579763)
chr7 (318-354)||(42313463-42313499)
chr7 (306-338)||(44651539-44651571)
[»] chr4 (10 HSPs)
chr4 (306-354)||(22164260-22164308)
chr4 (309-356)||(50668360-50668407)
chr4 (305-353)||(32268104-32268152)
chr4 (305-356)||(19479467-19479518)
chr4 (305-355)||(4916176-4916226)
chr4 (314-356)||(32923202-32923244)
chr4 (306-346)||(17729456-17729496)
chr4 (306-346)||(18903749-18903789)
chr4 (310-354)||(38767029-38767073)
chr4 (306-354)||(50152385-50152433)
[»] chr3 (13 HSPs)
chr3 (314-354)||(55395323-55395363)
chr3 (309-352)||(2186421-2186464)
chr3 (308-352)||(1111834-1111878)
chr3 (306-354)||(17755143-17755191)
chr3 (306-354)||(19056463-19056511)
chr3 (308-355)||(20612270-20612317)
chr3 (313-356)||(28965775-28965818)
chr3 (305-352)||(35392027-35392074)
chr3 (306-352)||(7464482-7464528)
chr3 (306-352)||(27185501-27185547)
chr3 (306-352)||(48209202-48209248)
chr3 (306-346)||(14030726-14030766)
chr3 (306-354)||(45334211-45334259)
[»] chr6 (7 HSPs)
chr6 (306-352)||(15169955-15170001)
chr6 (306-352)||(15178727-15178773)
chr6 (306-352)||(24623308-24623354)
chr6 (308-356)||(9311923-9311971)
chr6 (306-346)||(4455587-4455627)
chr6 (306-354)||(8138449-8138497)
chr6 (308-352)||(20744162-20744206)
[»] chr5 (11 HSPs)
chr5 (306-356)||(13864364-13864414)
chr5 (306-354)||(18999971-19000019)
chr5 (305-356)||(27903133-27903184)
chr5 (306-353)||(37884686-37884733)
chr5 (306-352)||(29695039-29695085)
chr5 (306-352)||(41266410-41266456)
chr5 (306-346)||(1809074-1809114)
chr5 (305-345)||(19647498-19647538)
chr5 (306-350)||(26675937-26675981)
chr5 (306-350)||(26947545-26947589)
chr5 (306-354)||(40782378-40782426)
[»] scaffold0122 (1 HSPs)
scaffold0122 (306-356)||(14177-14227)
[»] chr8 (8 HSPs)
chr8 (306-356)||(9192218-9192268)
chr8 (306-352)||(12800891-12800937)
chr8 (306-352)||(27571840-27571886)
chr8 (306-352)||(37570745-37570790)
chr8 (306-352)||(44632176-44632222)
chr8 (315-356)||(41603081-41603122)
chr8 (306-346)||(3650550-3650590)
chr8 (306-346)||(7996970-7997010)
[»] scaffold0111 (1 HSPs)
scaffold0111 (306-338)||(39422-39454)


Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 77 - 286
Target Start/End: Original strand, 40994518 - 40994727
Alignment:
Q  77 taacatgatcttatttatataaatctccttagtagaattttcaacctggggaggatgttgaactcctatcctttgtttatttcaattgggtaaagtattg 176  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40994518 taacatgatcttatttatataaatctccttaatagaattttcaacctggggaggatgttgaactcctatcctttgtttatttcaattgggtaaagtattg 40994617  T
Q  177 ttcccctatatgttttacagattgattttctatctaggagattttttagatgatggactaaatattgatatctttagtatataaaagagagtatcctaac 276  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  40994618 ttcccctatatgttttacagattgattttctatctaggagattttttagatgatggactaaatattgatatctttagtatacaaaagagagtatcctaac 40994717  T
Q  277 ccaatttata 286  Q
     |||||||||    
T  40994718 acaatttata 40994727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 306 - 353
Target Start/End: Original strand, 29896285 - 29896332
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgtt 353  Q
    ||||||||||||||||||||||||||||| ||| ||||||| ||||||    
T  29896285 tggtggtcggggtttgaaccccaaaccttgcatatattatgcattgtt 29896332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 352
Target Start/End: Original strand, 40994767 - 40994814
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||| ||||||||||| |||||| |||||||||||||||||    
T  40994767 atggtggtcggtgtttgaaccccgaaccttgcatctattatgtattgt 40994814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 9547400 - 9547446
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||||||||||| ||| ||||||| |||||    
T  9547400 tggtggtcggggtttgaaccccaaaccttgcatatattatgcattgt 9547446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 5028919 - 5028880
Alignment:
Q  313 cggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||||||| ||||||| |||||    
T  5028919 cggggtttgaaccccaaaccttacatatattatgcattgt 5028880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 352
Target Start/End: Complemental strand, 12126932 - 12126893
Alignment:
Q  313 cggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||| |||||||||||| |||||||||||||    
T  12126932 cggggtttgaacctcaaaccttacatatattatgtattgt 12126893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 12599856 - 12599902
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||| |||||||| ||||| ||| |||||||||||||    
T  12599856 tggtggtcggggttcgaaccccagaccttgcatatattatgtattgt 12599902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 32957534 - 32957584
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||||| || ||||| ||||||||||||||||| ||||||| |||||||||    
T  32957534 tggtggccgaggtttaaaccccaaaccttacatatattatgcattgttcat 32957584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 39340239 - 39340272
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacat 338  Q
    ||||||||||||||| ||||||||||||||||||    
T  39340239 atggtggtcggggttcgaaccccaaaccttacat 39340272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 32407564 - 32407600
Alignment:
Q  316 ggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||| |||||||||||| |||||||||||||    
T  32407564 ggtttgaacctcaaaccttacatatattatgtattgt 32407600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 42451503 - 42451463
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    |||||||||| ||||||||| |||||||||||| |||||||    
T  42451503 tggtggtcggagtttgaacctcaaaccttacatatattatg 42451463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 347
Target Start/End: Original strand, 42886869 - 42886909
Alignment:
Q  307 ggtggtcggggtttgaaccccaaaccttacatctattatgt 347  Q
    ||||||||||||||||| |||||||||||||| | ||||||    
T  42886869 ggtggtcggggtttgaaacccaaaccttacatattttatgt 42886909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 23979407 - 23979457
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    ||||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  23979407 tggtggtcggggtttgaaccccaaaccatacatatattatgtattgttcat 23979457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 15670633 - 15670677
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 350  Q
    |||| |||||||||||||||||||||||||||| |||||||||||    
T  15670633 tggtagtcggggtttgaaccccaaaccttacatatattatgtatt 15670677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 16924548 - 16924502
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||| ||||||||||||||| ||||||| |||||||||||||    
T  16924548 tggtggtcgaggtttgaaccccaaatcttacatatattatgtattgt 16924502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 43356505 - 43356459
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||| ||||||||||||| ||||||| |||||    
T  43356505 tggtggtcggggtttgaactccaaaccttacatatattatgcattgt 43356459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 13401666 - 13401621
Alignment:
Q  307 ggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||| |||||||||| ||||||| |||||    
T  13401666 ggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 13401621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 311 - 352
Target Start/End: Complemental strand, 43611489 - 43611448
Alignment:
Q  311 gtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||| ||||||||| |||||||||||||    
T  43611489 gtcggggtttgaaccccataccttacatatattatgtattgt 43611448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 24571616 - 24571664
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    |||||||||| |||||||||||| ||||| ||| |||||||||||||||    
T  24571616 tggtggtcggagtttgaaccccagaccttgcatatattatgtattgttc 24571664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 8269359 - 8269405
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||||    
T  8269359 tggtggtcggggtttgaaccccggaccttgcatatattatgtattgt 8269405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 11410697 - 11410647
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    ||||||||||| || |||||||| ||||||||| | |||||||||||||||    
T  11410697 tggtggtcgggattcgaaccccagaccttacatattttatgtattgttcat 11410647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 27533313 - 27533267
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||| |||||| ||| ||||||| |||||    
T  27533313 tggtggtcggggtttgaaccccgaaccttgcatatattatgcattgt 27533267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 34899617 - 34899663
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||| ||||||||||||||| || ||| |||||||||||||    
T  34899617 tggtggtcggagtttgaaccccaaactttgcatatattatgtattgt 34899663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 434337 - 434373
Alignment:
Q  316 ggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  434337 ggtttaaaccccaaaccttacatatattatgtattgt 434373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 8872930 - 8872898
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacat 338  Q
    |||||||||||||| ||||||||||||||||||    
T  8872930 tggtggtcggggttcgaaccccaaaccttacat 8872898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 12214062 - 12214015
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    |||||||||||||| |||||||| ||||| ||| |||||||||||||||    
T  12214062 tggtggtcggggtt-gaaccccagaccttgcatatattatgtattgttc 12214015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Complemental strand, 24978314 - 24978270
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 350  Q
    ||||||||||| ||||||||| ||||||| ||| |||||||||||    
T  24978314 tggtggtcgggatttgaaccctaaaccttgcatatattatgtatt 24978270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 33382249 - 33382293
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 350  Q
    ||||||||||||||||||| ||| ||||||||| |||||| ||||    
T  33382249 tggtggtcggggtttgaacaccagaccttacatatattatttatt 33382293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 314 - 354
Target Start/End: Complemental strand, 34083399 - 34083359
Alignment:
Q  314 ggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    |||||| |||||||||||||||||| ||||||| |||||||    
T  34083399 ggggttcgaaccccaaaccttacatatattatgcattgttc 34083359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 49196377 - 49196417
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    ||||||||||| |||||||||||||| |||||| |||||||    
T  49196377 tggtggtcgggatttgaaccccaaactttacatatattatg 49196417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 38780051 - 38780002
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||||||||||||||| |||||||||||||| |||||| ||||||||    
T  38780051 atggtggtcggggtttgaatcccaaaccttacatatattatttattgttc 38780002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 7994875 - 7994921
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||||| ||||||||| |||||||| ||||    
T  7994875 tggtggtcggggtttgaaccccagaccttacatatattatgttttgt 7994921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 5526796 - 5526749
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||||||| |||| || ||||||| |||||    
T  5526796 atggtggtcggggtttgaaccccaaatcttatatatattatgcattgt 5526749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 9522983 - 9522932
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    ||||||| ||||||| |||||||||||||| ||| ||||||| |||||||||    
T  9522983 atggtggccggggttcgaaccccaaaccttgcatatattatgcattgttcat 9522932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 346
Target Start/End: Complemental strand, 45151442 - 45151407
Alignment:
Q  311 gtcggggtttgaaccccaaaccttacatctattatg 346  Q
    |||||||||||||||||||||||||||| |||||||    
T  45151442 gtcggggtttgaaccccaaaccttacatatattatg 45151407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 3671894 - 3671844
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    ||||||||||||||||||| ||| ||||| ||| ||||||| |||||||||    
T  3671894 tggtggtcggggtttgaactccagaccttgcatatattatgcattgttcat 3671844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 7388030 - 7388076
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||| ||| |||||||||| ||||||| |||||    
T  7388030 tggtggtcggggtttgaatcccgaaccttacatatattatgcattgt 7388076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 353
Target Start/End: Complemental strand, 25251575 - 25251533
Alignment:
Q  311 gtcggggtttgaaccccaaaccttacatctattatgtattgtt 353  Q
    ||||||||||||||||||||||||| || ||||||| ||||||    
T  25251575 gtcggggtttgaaccccaaaccttatatatattatgcattgtt 25251533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 26920705 - 26920751
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||||||  ||||||  ||||||||||||    
T  26920705 tggtggtcggggtttgaaccccaaaatttacatacattatgtattgt 26920751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 27833392 - 27833438
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||||  ||||||||| ||||||| |||||    
T  27833392 tggtggtcggggtttgaaccccggaccttacatatattatgcattgt 27833438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 31414168 - 31414122
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||| ||| ||| ||||| |||||||||||||    
T  31414168 tggtggtcggggtttgaactccagaccctacatatattatgtattgt 31414122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 46849098 - 46849144
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||| |||||| |||||| ||||||| |||||    
T  46849098 tggtggtcggggtttgaactccaaactttacatatattatgcattgt 46849144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 305 - 354
Target Start/End: Complemental strand, 2622396 - 2622347
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||| |||||||||||| | ||| ||||||| |||||||||||||||    
T  2622396 atggtggccggggtttgaactctaaatcttacatatattatgtattgttc 2622347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 5579763 - 5579723
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  5579763 tggtggtcggggtttgaaccccagaccttgcatatattatg 5579723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 42313499 - 42313463
Alignment:
Q  318 tttgaaccccaaaccttacatctattatgtattgttc 354  Q
    |||||||||||| |||||||| |||||||||||||||    
T  42313499 tttgaaccccaagccttacatatattatgtattgttc 42313463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 44651571 - 44651539
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacat 338  Q
    ||||||| |||||||||||||||||||||||||    
T  44651571 tggtggttggggtttgaaccccaaaccttacat 44651539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 22164260 - 22164308
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||||||||||||||||||| ||||||||| ||||||| |||||||    
T  22164260 tggtggtcggggtttgaaccccagaccttacatatattatgcattgttc 22164308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 356
Target Start/End: Complemental strand, 50668407 - 50668360
Alignment:
Q  309 tggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||| |||||||||||||| |||||||||| |||||||||||||||||    
T  50668407 tggttggggtttgaaccccgaaccttacatatattatgtattgttcat 50668360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 353
Target Start/End: Complemental strand, 32268152 - 32268104
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgtt 353  Q
    ||||||||||| |||||||||||||||||| ||| ||||||| ||||||    
T  32268152 atggtggtcggagtttgaaccccaaacctttcatatattatgcattgtt 32268104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Original strand, 19479467 - 19479518
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||||||||||||||||||||||  ||||| ||| ||||||| |||||||||    
T  19479467 atggtggtcggggtttgaaccccggaccttgcatatattatgcattgttcat 19479518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 305 - 355
Target Start/End: Complemental strand, 4916226 - 4916176
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgttca 355  Q
    ||||||| | |||||||||||||||| ||||||| ||||||| ||||||||    
T  4916226 atggtggccagggtttgaaccccaaatcttacatatattatgcattgttca 4916176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 32923202 - 32923244
Alignment:
Q  314 ggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||||||||||||| |||||||||| ||||||| |||||||||    
T  32923202 ggggtttgaaccccgaaccttacatatattatgcattgttcat 32923244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 17729496 - 17729456
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  17729496 tggtggtcggggtttgaaccccagaccttgcatatattatg 17729456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 18903749 - 18903789
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    |||||||| |||||||||||||| ||||||||| |||||||    
T  18903749 tggtggtcagggtttgaaccccagaccttacatatattatg 18903789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 310 - 354
Target Start/End: Original strand, 38767029 - 38767073
Alignment:
Q  310 ggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    |||||| |||||||||||||||||||||| | ||||| |||||||    
T  38767029 ggtcggagtttgaaccccaaaccttacatatgttatgcattgttc 38767073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 50152433 - 50152385
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    |||||||||||||||||||||||  |||||||| | ||||| |||||||    
T  50152433 tggtggtcggggtttgaaccccatcccttacatattttatgcattgttc 50152385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 314 - 354
Target Start/End: Original strand, 55395323 - 55395363
Alignment:
Q  314 ggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  55395323 ggggtttgaaccccaaaccttacatatattatgtattgttc 55395363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 309 - 352
Target Start/End: Original strand, 2186421 - 2186464
Alignment:
Q  309 tggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||| ||||||||| |||||||||||||    
T  2186421 tggtcggggtttgaaccccagaccttacatatattatgtattgt 2186464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 352
Target Start/End: Original strand, 1111834 - 1111878
Alignment:
Q  308 gtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||| ||||| ||| |||||||||||||    
T  1111834 gtggtcggggtttgaaccccagaccttgcatatattatgtattgt 1111878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 17755191 - 17755143
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||||||  |||||||||| |||||||||| |||||||||||||||    
T  17755191 tggtggtcggaatttgaaccccgaaccttacatatattatgtattgttc 17755143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 19056511 - 19056463
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||||||  |||||||||| |||||||||| |||||||||||||||    
T  19056511 tggtggtcggaatttgaaccccgaaccttacatatattatgtattgttc 19056463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 308 - 355
Target Start/End: Original strand, 20612270 - 20612317
Alignment:
Q  308 gtggtcggggtttgaaccccaaaccttacatctattatgtattgttca 355  Q
    |||| |||||||||||||||||||||| ||| ||||||| ||||||||    
T  20612270 gtggccggggtttgaaccccaaaccttgcatatattatgcattgttca 20612317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 313 - 356
Target Start/End: Original strand, 28965775 - 28965818
Alignment:
Q  313 cggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    ||||||||||||||| |||||||||| ||||||| |||||||||    
T  28965775 cggggtttgaaccccgaaccttacatatattatgcattgttcat 28965818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 352
Target Start/End: Complemental strand, 35392074 - 35392027
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||| |  ||||||||||||||||||||| |||||||||||||    
T  35392074 atggtggtctgactttgaaccccaaaccttacatatattatgtattgt 35392027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 7464482 - 7464528
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||||  ||||||||| ||||||| |||||    
T  7464482 tggtggtcggggtttgaaccccggaccttacatatattatgcattgt 7464528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 27185547 - 27185501
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||| ||||||||||||| ||||| ||| |||||||||||||    
T  27185547 tggtggtcgaggtttgaaccccagaccttgcatatattatgtattgt 27185501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 48209202 - 48209248
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||  ||||||| || |||||||||||||    
T  48209202 tggtggtcggggtttgaaccctgaaccttatatatattatgtattgt 48209248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 14030726 - 14030766
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    ||||||||||||||||||| ||||||||| ||| |||||||    
T  14030726 tggtggtcggggtttgaactccaaaccttgcatatattatg 14030766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 45334259 - 45334211
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||||||| |||||||||| |||||| ||| ||||||| |||||||    
T  45334259 tggtggtcgggatttgaaccccgaaccttgcatatattatgcattgttc 45334211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 15170001 - 15169955
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||    
T  15170001 tggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15169955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 15178773 - 15178727
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||    
T  15178773 tggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 15178727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 24623308 - 24623354
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||| |||||||||| ||||||| |||||    
T  24623308 tggtggtcggggtttgaaccccgaaccttacatatattatgcattgt 24623354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 9311923 - 9311971
Alignment:
Q  308 gtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||||||||||||||||| |||| ||||||| ||||||||||| |||||    
T  9311923 gtggtcggggtttgaacctcaaatcttacatatattatgtattattcat 9311971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Original strand, 4455587 - 4455627
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  4455587 tggtggtcggggtttgaaccccagaccttgcatatattatg 4455627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Original strand, 8138449 - 8138497
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||| | ||||||||||||| ||||||||| ||||||| |||||||    
T  8138449 tggtggttgaggtttgaaccccagaccttacatatattatgcattgttc 8138497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 352
Target Start/End: Complemental strand, 20744206 - 20744162
Alignment:
Q  308 gtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||| ||||| ||| ||||||| |||||    
T  20744206 gtggtcggggtttgaaccccagaccttgcatatattatgcattgt 20744162  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 13864414 - 13864364
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||||||||    
T  13864414 tggtggtcggggtttgaaccccggaccttgcatatattatgtattgttcat 13864364  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 19000019 - 18999971
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    |||||||| | |||||||||||||||||||||| |||||| ||||||||    
T  19000019 tggtggtcagagtttgaaccccaaaccttacatatattatatattgttc 18999971  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 305 - 356
Target Start/End: Complemental strand, 27903184 - 27903133
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    ||||||||||| ||||||||||| |||||| ||| ||||||| |||||||||    
T  27903184 atggtggtcggagtttgaaccccgaaccttgcatatattatgcattgttcat 27903133  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 37884733 - 37884686
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgtt 353  Q
    |||||||||||||||||||||   ||||||||||| ||||||||||||    
T  37884733 tggtggtcggggtttgaaccctggaccttacatcttttatgtattgtt 37884686  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 29695085 - 29695039
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||| | |||||||||| ||||||| |||||    
T  29695085 tggtggtcggggtttgaaccacgaaccttacatatattatgcattgt 29695039  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Complemental strand, 41266456 - 41266410
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||| |||||||| |||||||||| |||||||| ||||    
T  41266456 tggtggtcggggtgtgaaccccgaaccttacatatattatgttttgt 41266410  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 1809114 - 1809074
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    |||||||| |||||||||||||||| ||||||| |||||||    
T  1809114 tggtggtcagggtttgaaccccaaatcttacatatattatg 1809074  T

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Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 305 - 345
Target Start/End: Original strand, 19647498 - 19647538
Alignment:
Q  305 atggtggtcggggtttgaaccccaaaccttacatctattat 345  Q
    |||||||||||| ||||||||||| ||||||||| ||||||    
T  19647498 atggtggtcgggatttgaaccccagaccttacatatattat 19647538  T

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Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 26675937 - 26675981
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 350  Q
    ||||||||| ||| |||||| |||||||||||| |||||||||||    
T  26675937 tggtggtcgaggtgtgaaccacaaaccttacatatattatgtatt 26675981  T

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Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 26947545 - 26947589
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtatt 350  Q
    ||||||||| ||| |||||| |||||||||||| |||||||||||    
T  26947545 tggtggtcgaggtgtgaaccacaaaccttacatatattatgtatt 26947589  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 354
Target Start/End: Complemental strand, 40782426 - 40782378
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttc 354  Q
    ||||||||||||||  ||||||  ||||||||| |||||||||||||||    
T  40782426 tggtggtcggggttcaaacccctgaccttacatatattatgtattgttc 40782378  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 14177 - 14227
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||||||||||||||||||| || ||||| ||| ||||||| |||||||||    
T  14177 tggtggtcggggtttgaaccacataccttgcatatattatgcattgttcat 14227  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 356
Target Start/End: Original strand, 9192218 - 9192268
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||||| |||||||||||||||| || |||||| ||||||| |||||||||    
T  9192218 tggtggccggggtttgaaccccagactttacatatattatgcattgttcat 9192268  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 12800891 - 12800937
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||||||||||||||  ||||| ||| |||||||||||||    
T  12800891 tggtggtcggggtttgaaccccggaccttgcatatattatgtattgt 12800937  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 27571840 - 27571886
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    ||||||||||| ||||||||||||||||| ||| ||||||| |||||    
T  27571840 tggtggtcgggatttgaaccccaaaccttgcatatattatgcattgt 27571886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 37570745 - 37570790
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||| |||||||||| | |||||||||||    
T  37570745 tggtggtcggggtttgaacccc-aaccttacatatgttatgtattgt 37570790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 306 - 352
Target Start/End: Original strand, 44632176 - 44632222
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatgtattgt 352  Q
    |||||||||||||||||||||| ||||||| || ||||||| |||||    
T  44632176 tggtggtcggggtttgaaccccgaaccttatatatattatgcattgt 44632222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 41603122 - 41603081
Alignment:
Q  315 gggtttgaaccccaaaccttacatctattatgtattgttcat 356  Q
    |||||||||||||| ||||||||| ||||||| |||||||||    
T  41603122 gggtttgaaccccagaccttacatatattatgcattgttcat 41603081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 3650590 - 3650550
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    |||||| ||||||||||||||| |||||||||| |||||||    
T  3650590 tggtggccggggtttgaaccccgaaccttacatatattatg 3650550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 346
Target Start/End: Complemental strand, 7997010 - 7996970
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacatctattatg 346  Q
    ||||||||||||||||||||||| ||||| ||| |||||||    
T  7997010 tggtggtcggggtttgaaccccagaccttgcatatattatg 7996970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 338
Target Start/End: Complemental strand, 39454 - 39422
Alignment:
Q  306 tggtggtcggggtttgaaccccaaaccttacat 338  Q
    ||||||||||||||||||||||| |||||||||    
T  39454 tggtggtcggggtttgaaccccagaccttacat 39422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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