View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7209_high_2 (Length: 280)

Name: NF7209_high_2
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7209_high_2
NF7209_high_2
[»] chr3 (28 HSPs)
chr3 (1-280)||(10464727-10465006)
chr3 (1-60)||(20080076-20080136)
chr3 (1-34)||(40367638-40367671)
chr3 (1-60)||(8846494-8846554)
chr3 (1-60)||(24095414-24095474)
chr3 (1-60)||(55400002-55400062)
chr3 (1-36)||(6178434-6178469)
chr3 (1-60)||(20547999-20548058)
chr3 (3-65)||(30863086-30863149)
chr3 (1-36)||(42358647-42358682)
chr3 (1-60)||(46852140-46852199)
chr3 (4-62)||(49167751-49167810)
chr3 (3-37)||(51343435-51343469)
chr3 (1-34)||(33796296-33796329)
chr3 (1-65)||(34057961-34058026)
chr3 (1-62)||(41505492-41505553)
chr3 (1-34)||(45711448-45711481)
chr3 (3-36)||(50559222-50559255)
chr3 (1-37)||(3953483-3953519)
chr3 (1-37)||(10811162-10811198)
chr3 (1-65)||(26014810-26014874)
chr3 (1-60)||(26996319-26996379)
chr3 (2-34)||(31931028-31931060)
chr3 (2-34)||(33389038-33389070)
chr3 (5-33)||(43143547-43143575)
chr3 (1-60)||(43904976-43905036)
chr3 (1-60)||(44677492-44677552)
chr3 (1-37)||(49417602-49417638)
[»] chr5 (15 HSPs)
chr5 (1-75)||(32912026-32912101)
chr5 (1-60)||(19839994-19840054)
chr5 (1-60)||(7076577-7076636)
chr5 (1-60)||(18660762-18660821)
chr5 (1-60)||(22649670-22649729)
chr5 (1-66)||(6517709-6517775)
chr5 (1-60)||(34124624-34124684)
chr5 (1-32)||(34379485-34379516)
chr5 (1-66)||(21064234-21064300)
chr5 (1-60)||(189711-189771)
chr5 (1-65)||(1764222-1764286)
chr5 (1-60)||(8267828-8267888)
chr5 (1-60)||(10649438-10649498)
chr5 (1-60)||(19481190-19481250)
chr5 (1-37)||(38363108-38363144)
[»] chr7 (19 HSPs)
chr7 (5-60)||(3343342-3343398)
chr7 (1-60)||(46773650-46773710)
chr7 (1-66)||(34978293-34978359)
chr7 (1-60)||(33180718-33180778)
chr7 (1-60)||(34757476-34757536)
chr7 (1-60)||(13152596-13152655)
chr7 (1-32)||(18111620-18111651)
chr7 (5-36)||(30061309-30061340)
chr7 (1-60)||(31844613-31844672)
chr7 (3-60)||(37808774-37808832)
chr7 (3-60)||(37899223-37899281)
chr7 (1-34)||(6269396-6269429)
chr7 (1-34)||(34108863-34108896)
chr7 (1-34)||(40854663-40854696)
chr7 (1-34)||(44496811-44496844)
chr7 (1-34)||(46829509-46829542)
chr7 (4-32)||(8904418-8904446)
chr7 (1-60)||(35586781-35586841)
chr7 (1-60)||(41893918-41893978)
[»] chr6 (19 HSPs)
chr6 (1-60)||(2689072-2689132)
chr6 (1-60)||(24842371-24842431)
chr6 (1-60)||(5570342-5570401)
chr6 (1-65)||(23628358-23628423)
chr6 (1-60)||(2242030-2242090)
chr6 (5-64)||(5522650-5522710)
chr6 (1-60)||(18141309-18141369)
chr6 (1-60)||(20822876-20822936)
chr6 (1-37)||(34442071-34442107)
chr6 (1-63)||(30152538-30152601)
chr6 (1-34)||(13422998-13423031)
chr6 (1-34)||(14817961-14817994)
chr6 (1-66)||(25811847-25811912)
chr6 (1-34)||(33635909-33635942)
chr6 (1-60)||(3198963-3199023)
chr6 (1-60)||(11547537-11547597)
chr6 (6-34)||(25142564-25142592)
chr6 (5-60)||(32459529-32459585)
chr6 (1-65)||(34047385-34047449)
[»] chr4 (23 HSPs)
chr4 (1-65)||(7627846-7627911)
chr4 (1-60)||(40348797-40348856)
chr4 (5-60)||(50050641-50050696)
chr4 (1-60)||(33860650-33860710)
chr4 (1-64)||(38519792-38519856)
chr4 (2-65)||(47240815-47240879)
chr4 (1-37)||(56557760-56557796)
chr4 (1-60)||(2268516-2268575)
chr4 (3-65)||(14443196-14443259)
chr4 (1-60)||(37297052-37297111)
chr4 (1-60)||(45082984-45083043)
chr4 (1-66)||(439268-439334)
chr4 (1-65)||(149493-149558)
chr4 (1-30)||(22027450-22027479)
chr4 (1-34)||(44257738-44257771)
chr4 (1-34)||(56474772-56474805)
chr4 (5-60)||(9362690-9362746)
chr4 (1-60)||(13139151-13139211)
chr4 (1-37)||(30170028-30170064)
chr4 (1-60)||(39158108-39158168)
chr4 (1-60)||(40609613-40609673)
chr4 (2-34)||(47288112-47288144)
chr4 (2-34)||(48649548-48649580)
[»] chr8 (15 HSPs)
chr8 (5-60)||(5864206-5864262)
chr8 (1-60)||(41600312-41600372)
chr8 (1-60)||(45529254-45529314)
chr8 (1-63)||(9549207-9549270)
chr8 (1-63)||(44825443-44825505)
chr8 (1-60)||(9208069-9208129)
chr8 (1-37)||(12735020-12735056)
chr8 (1-60)||(31596951-31597011)
chr8 (1-36)||(6991816-6991851)
chr8 (1-34)||(18651400-18651433)
chr8 (1-60)||(11017808-11017868)
chr8 (1-60)||(12707152-12707212)
chr8 (9-60)||(12783769-12783821)
chr8 (4-36)||(34435748-34435780)
chr8 (1-60)||(36426028-36426088)
[»] chr2 (28 HSPs)
chr2 (1-60)||(7648395-7648454)
chr2 (1-60)||(22888830-22888889)
chr2 (1-60)||(41195587-41195646)
chr2 (1-60)||(433853-433913)
chr2 (1-60)||(6999076-6999136)
chr2 (1-37)||(11385022-11385058)
chr2 (1-60)||(13765403-13765463)
chr2 (5-60)||(30546381-30546437)
chr2 (1-36)||(7502436-7502471)
chr2 (1-60)||(9207593-9207652)
chr2 (2-60)||(44254602-44254661)
chr2 (3-60)||(2563707-2563765)
chr2 (5-60)||(7552557-7552614)
chr2 (1-35)||(25881573-25881607)
chr2 (1-60)||(4061969-4062027)
chr2 (1-34)||(4384084-4384117)
chr2 (3-36)||(8427580-8427613)
chr2 (1-62)||(8848704-8848765)
chr2 (5-61)||(32869828-32869885)
chr2 (1-37)||(6170657-6170693)
chr2 (1-60)||(9634444-9634504)
chr2 (1-29)||(10711759-10711787)
chr2 (1-37)||(14255329-14255365)
chr2 (5-60)||(15269864-15269920)
chr2 (1-60)||(29684620-29684680)
chr2 (4-36)||(37731211-37731243)
chr2 (1-37)||(38821393-38821429)
chr2 (1-29)||(42607539-42607567)
[»] chr1 (26 HSPs)
chr1 (1-60)||(46172415-46172474)
chr1 (1-59)||(47215737-47215796)
chr1 (1-39)||(52267228-52267266)
chr1 (3-60)||(15083061-15083118)
chr1 (1-60)||(10890054-10890114)
chr1 (1-60)||(13489665-13489725)
chr1 (1-60)||(15705070-15705130)
chr1 (1-60)||(51286375-51286435)
chr1 (1-60)||(52362485-52362545)
chr1 (1-32)||(8846005-8846036)
chr1 (1-36)||(50775165-50775200)
chr1 (1-32)||(50824773-50824804)
chr1 (7-60)||(26967213-26967267)
chr1 (1-34)||(1689421-1689454)
chr1 (1-34)||(30536021-30536054)
chr1 (1-66)||(37685328-37685393)
chr1 (1-66)||(37700125-37700190)
chr1 (3-60)||(45333573-45333630)
chr1 (1-60)||(5771756-5771816)
chr1 (1-60)||(7171244-7171304)
chr1 (1-60)||(16986941-16987001)
chr1 (1-37)||(32915080-32915116)
chr1 (1-60)||(34254359-34254419)
chr1 (1-60)||(46543450-46543510)
chr1 (1-37)||(47214235-47214271)
chr1 (1-60)||(52714909-52714969)
[»] scaffold0199 (1 HSPs)
scaffold0199 (1-63)||(8668-8730)
[»] scaffold0174 (1 HSPs)
scaffold0174 (1-65)||(34802-34867)
[»] scaffold0276 (1 HSPs)
scaffold0276 (2-34)||(1674-1706)
[»] scaffold0136 (1 HSPs)
scaffold0136 (1-60)||(38428-38488)


Alignment Details
Target: chr3 (Bit Score: 272; Significance: 1e-152; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 10465006 - 10464727
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcattaaatttagctctgtagttgatgacgctagaaagt 100  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10465006 tgagtatgagagagaaaattgtcacaaaaattttcattgatgaatgttcaaatatcatttttcattaaatttagctctgtagttgatgacgctagaaagt 10464907  T
Q  101 agatttttgaggtgtcttcatatgcttaaaccagggatggcatgatctacggtatcagcgatccatagtctcattgttgatgtctattagccctcttggt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  10464906 agatttttgaggtgtcttcatatgcttaaaccagggatggcatgatctacggtatcagcgatccatagtctcattgttcatgtctattagccctcttggt 10464807  T
Q  201 taggttgacacgtggacagaagaggacagcaagttaattggtcaatttacatggctgcattatgtgttttttagaataat 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10464806 taggttgacacgtggacagaagaggacagcaagttaattggtcaatttacatggctgcattatgtgttttttagaataat 10464727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 20080136 - 20080076
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||||||||||||  ||| ||||||||||| |||||    
T  20080136 tgagtatgagagagaaagttgtcacaaaaattgtcattaaatggatgttcaaataccattt 20080076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 40367671 - 40367638
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  40367671 tgagtatgagagagaaaattgtcacaaaaattgt 40367638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 8846554 - 8846494
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattg-atgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||||||||| |||| || | ||  |||||||||||||||||    
T  8846554 tgagtatgagagagaaaattgtcacaaaagttgttatcgaatagatgttcaaatatcattt 8846494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 24095414 - 24095474
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||||||||||||| ||||   ||| |||||||||||||||||    
T  24095414 tgagtatgagagagaaagttgtcacaaaaattatcataaaatggatgttcaaatatcattt 24095474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 55400062 - 55400002
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  55400062 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 55400002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6178434 - 6178469
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6178434 tgagtatgagagagaaaattgtcacaaaagttgtca 6178469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20547999 - 20548058
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||||||||| |||| |    ||| ||||||||||||||||    
T  20547999 tgagtatgagagagaaaattgtcacaaaagttgtaaaaactgattgttcaaatatcattt 20548058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 65
Target Start/End: Original strand, 30863086 - 30863149
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcatttttcat 65  Q
    ||||||||||||||| |||||||||||||| ||||   ||| ||||||||||||||||| ||||    
T  30863086 agtatgagagagaaagttgtcacaaaaattatcatcaaatggatgttcaaatatcatttctcat 30863149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42358647 - 42358682
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  42358647 tgagtatgagagagaaagttgtcacaaaaattgtca 42358682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46852140 - 46852199
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||||||||||  | ||||  ||| |||||||||||||||||    
T  46852140 tgagtatgagagagaaagttgtcacaaaagctatcataaatggatgttcaaatatcattt 46852199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 4 - 62
Target Start/End: Complemental strand, 49167810 - 49167751
Alignment:
Q  4 gtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattttt 62  Q
    |||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||||    
T  49167810 gtatgagagagaaagttgtcacaaaagttgtcatcaaatggatgttcaaatatcattttt 49167751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 51343469 - 51343435
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||||||||||||| |||||||    
T  51343469 agtatgagagagaaaattgtcacaaaagttgtcat 51343435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 33796329 - 33796296
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  33796329 tgagtatgagagagaaagttgtcacaaaaattgt 33796296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34057961 - 34058026
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcatttttcat 65  Q
    ||||||||||||||||| ||||||||||| || ||||   ||| ||||||||||||||||| ||||    
T  34057961 tgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcatttctcat 34058026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 41505553 - 41505492
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattttt 62  Q
    ||||||||||||||||| ||||||||||| |||| |   || | ||||||||||||||||||    
T  41505553 tgagtatgagagagaaagttgtcacaaaagttgtaaaaaataattgttcaaatatcattttt 41505492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 45711448 - 45711481
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  45711448 tgagtatgagagagaaaattgtcacaaaagttgt 45711481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 50559222 - 50559255
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtca 36  Q
    ||||||||||||||||||||||||||| ||||||    
T  50559222 agtatgagagagaaaattgtcacaaaagttgtca 50559255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3953483 - 3953519
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||| |||||||||||||| ||||    
T  3953483 tgagtatgagagagaaagttgtcacaaaaattatcat 3953519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 10811198 - 10811162
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  10811198 tgagtatgagagagaaagttgtcacaaaagttgtcat 10811162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 26014874 - 26014810
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcat 65  Q
    ||||||||||||||||| ||||||||||| |||| |   |||  |||||||||||||||| ||||    
T  26014874 tgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 26014810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 26996379 - 26996319
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||| |||||| |||| | |  |||||||||||||||||||||    
T  26996379 tgagtatgagagagaaagttgttacaaaagttgttactaaatgaatgttcaaatatcattt 26996319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Original strand, 31931028 - 31931060
Alignment:
Q  2 gagtatgagagagaaaattgtcacaaaaattgt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  31931028 gagtatgagagagaaaattgtcacaaaagttgt 31931060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 33389070 - 33389038
Alignment:
Q  2 gagtatgagagagaaaattgtcacaaaaattgt 34  Q
    |||||||||||||||| ||||||||||||||||    
T  33389070 gagtatgagagagaaagttgtcacaaaaattgt 33389038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 33
Target Start/End: Complemental strand, 43143575 - 43143547
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattg 33  Q
    |||||||||||||||||||||||||||||    
T  43143575 tatgagagagaaaattgtcacaaaaattg 43143547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 43905036 - 43904976
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||| ||||||||| ||| |  ||| |||||||||||||||||    
T  43905036 tgagtatgagagagaaagttgttacaaaaattatcactaaatggatgttcaaatatcattt 43904976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 44677492 - 44677552
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||  ||||| |||||| |  ||| |||||||||||||||||    
T  44677492 tgagtatgagagagaaaattgttgcaaaagttgtcactaaatggatgttcaaatatcattt 44677552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49417638 - 49417602
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  49417638 tgagtatgagagagaaagttgtcacaaaagttgtcat 49417602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32912101 - 32912026
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcatttttcattaaatttagc 75  Q
    |||||||||||||||||||||||||||||||| ||||   ||||||||||||||||||||| || |||||| ||||    
T  32912101 tgagtatgagagagaaaattgtcacaaaaattatcataaaatgaatgttcaaatatcatttctctttaaatatagc 32912026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19839994 - 19840054
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||||||||||||||||||   |||||||||||||||||||||    
T  19839994 tgagtatgagagagaaagttgtcacaaaaattgtcataaaatgaatgttcaaatatcattt 19840054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7076577 - 7076636
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||||||||||||||| | |   |||| ||||||||||||||||    
T  7076577 tgagtatgagagagaaaattgtcacaaaaattataaaaaatgattgttcaaatatcattt 7076636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 18660821 - 18660762
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||||||||| ||||||   |||  ||||||||||||||||    
T  18660821 tgagtatgagagagaaaattgtcacaaaagttgtcaaaaatggttgttcaaatatcattt 18660762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22649670 - 22649729
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||||||||||||||||| |   |||  ||||||||||||||||    
T  22649670 tgagtatgagagagaaaattgtcacaaaaattgtaaaaaatggttgttcaaatatcattt 22649729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 6517775 - 6517709
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcatttttcatt 66  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| ||||||||||||||||| |||||    
T  6517775 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcatttctcatt 6517709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34124684 - 34124624
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||| ||||||||||| ||||   ||| |||||||||||||||||    
T  34124684 tgagtatgagagagaaaattatcacaaaaattatcataaaatggatgttcaaatatcattt 34124624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 34379516 - 34379485
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaatt 32  Q
    ||||||||||||||||||||||||||||||||    
T  34379516 tgagtatgagagagaaaattgtcacaaaaatt 34379485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 21064234 - 21064300
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattga-tgaatgttcaaatatcatttttcatt 66  Q
    ||||||||||||||||| ||||  ||||| |||||| | | |||||||||||||||||||| |||||    
T  21064234 tgagtatgagagagaaagttgttgcaaaagttgtcactaaatgaatgttcaaatatcatttctcatt 21064300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 189711 - 189771
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| || ||||   ||| |||||||||||||||||    
T  189711 tgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcattt 189771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 1764286 - 1764222
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcat 65  Q
    ||||||||||||||||| |||||||| || |||| |   |||| |||||||||||||||| ||||    
T  1764286 tgagtatgagagagaaagttgtcacagaagttgtaaaaaatgattgttcaaatatcatttctcat 1764222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8267828 - 8267888
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||  |||||||||||| |  ||| |||||||||||||||||    
T  8267828 tgagtatgagagagaaagttgttgcaaaaattgtcactaaatggatgttcaaatatcattt 8267888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 10649498 - 10649438
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||| ||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  10649498 tgagtatgaaagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 10649438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 19481190 - 19481250
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| || ||||   ||| |||||||||||||||||    
T  19481190 tgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcattt 19481250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38363144 - 38363108
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  38363144 tgagtatgagagagaaaattatcacaaaaattatcat 38363108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 3343342 - 3343398
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  3343342 tatgagagagaaaattgtcacaaaaattgtcataaaatgaatgttcaaatatcattt 3343398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46773650 - 46773710
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattg-atgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||  |||||||||||| || ||| |||||||||||||||||    
T  46773650 tgagtatgagagagaaaattgttgcaaaaattgtcactgaatggatgttcaaatatcattt 46773710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 34978359 - 34978293
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattga-tgaatgttcaaatatcatttttcatt 66  Q
    ||||||||||||||||| ||||||||||||||||||   | ||| |||||||||||||||| |||||    
T  34978359 tgagtatgagagagaaagttgtcacaaaaattgtcaaaaagtgattgttcaaatatcatttctcatt 34978293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33180718 - 33180778
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||||||| |||| ||||||    |||||||||||||||||||||    
T  33180718 tgagtatgagagagaaaattgtcataaaagttgtcacaaaatgaatgttcaaatatcattt 33180778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34757476 - 34757536
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||||||| | ||||||||||| ||||| || |||| |||||||||||||||||    
T  34757476 tgagtatgagagagagagttgtcacaaaagttgtcgttagatggatgttcaaatatcattt 34757536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13152655 - 13152596
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| ||||||   |||  ||||||||||||||||    
T  13152655 tgagtatgagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcattt 13152596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 18111620 - 18111651
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaatt 32  Q
    ||||||||||||||||||||||||||||||||    
T  18111620 tgagtatgagagagaaaattgtcacaaaaatt 18111651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 36
Target Start/End: Complemental strand, 30061340 - 30061309
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtca 36  Q
    ||||||||||||||||||||||||||||||||    
T  30061340 tatgagagagaaaattgtcacaaaaattgtca 30061309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 31844613 - 31844672
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||| | |||||||||||||| |||||||||||   ||| |||||||||||||||||    
T  31844613 tgagtataaaagagaaaattgtcataaaaattgtcacaaatggatgttcaaatatcattt 31844672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 37808774 - 37808832
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||  |||||||||||| |  ||| |||||||||||||||||    
T  37808774 agtatgagagagaaaattgttgcaaaaattgtcactaaatggatgttcaaatatcattt 37808832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 37899223 - 37899281
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||| ||||||||||||||||||    ||| |||||||||||||||||    
T  37899223 agtatgagagagaaagttgtcacaaaaattgtcacaaaatggatgttcaaatatcattt 37899281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 6269429 - 6269396
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  6269429 tgagtatgagagagaaagttgtcacaaaaattgt 6269396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 34108863 - 34108896
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  34108863 tgagtatgagagagaaaattgtcacaaaagttgt 34108896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 40854663 - 40854696
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  40854663 tgagtatgagagagaaaattgtcacaaaagttgt 40854696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44496811 - 44496844
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  44496811 tgagtatgagagagaaagttgtcacaaaaattgt 44496844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 46829542 - 46829509
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  46829542 tgagtatgagagagaaagttgtcacaaaaattgt 46829509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 32
Target Start/End: Original strand, 8904418 - 8904446
Alignment:
Q  4 gtatgagagagaaaattgtcacaaaaatt 32  Q
    |||||||||||||||||||||||||||||    
T  8904418 gtatgagagagaaaattgtcacaaaaatt 8904446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 35586781 - 35586841
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| || ||||   ||| |||||||||||||||||    
T  35586781 tgagtatgagagagaaagttgtcacaaaagttatcataaaatggatgttcaaatatcattt 35586841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41893978 - 41893918
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||| ||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  41893978 tgagtatgaaagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 41893918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2689072 - 2689132
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||    
T  2689072 tgagtatgagagagaaagttgtcacaaaaattgtcattaaatggatgttcaaatatcattt 2689132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24842431 - 24842371
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||  |||||||||| ||||||||  |||||||||||||||||||||    
T  24842431 tgagtatgagagagaaagctgtcacaaaagttgtcattaaatgaatgttcaaatatcattt 24842371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5570342 - 5570401
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||||||||||||||||| |   |||  ||||||||||||||||    
T  5570342 tgagtatgagagagaaaattgtcacaaaaattgtaaaaaatggttgttcaaatatcattt 5570401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 23628423 - 23628358
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcatttttcat 65  Q
    ||||||||||| |||||||||||||||||||| |||||  ||| || |||||||||||||| ||||    
T  23628423 tgagtatgagatagaaaattgtcacaaaaattatcattaaatggatattcaaatatcatttctcat 23628358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2242030 - 2242090
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtc-attgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||||||||| |   |||| ||||||||||||||||    
T  2242030 tgagtatgagagagaaagttgtcacaaaaattgtcaaaaaatgattgttcaaatatcattt 2242090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 64
Target Start/End: Original strand, 5522650 - 5522710
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcatttttca 64  Q
    ||||||||| ||| |||||||||||||| |||   ||||||||||||||||||||||||||    
T  5522650 tatgagagataaagttgtcacaaaaattatcaaaagatgaatgttcaaatatcatttttca 5522710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 18141309 - 18141369
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||||||||| |||||||||||    
T  18141309 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatgaatgtttaaatatcattt 18141369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 20822876 - 20822936
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  20822876 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 20822936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34442071 - 34442107
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  34442071 tgagtatgagagagaaaattgtcacaaaagttgtcat 34442107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 30152538 - 30152601
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattga-tgaatgttcaaatatcatttttc 63  Q
    ||||||||||||||||| ||||  ||||| |||||| | | |||||||||||||||||||||||    
T  30152538 tgagtatgagagagaaagttgttgcaaaagttgtcactaaatgaatgttcaaatatcatttttc 30152601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 13423031 - 13422998
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  13423031 tgagtatgagagagaaagttgtcacaaaaattgt 13422998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14817994 - 14817961
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  14817994 tgagtatgagagagaaagttgtcacaaaaattgt 14817961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 25811847 - 25811912
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcatt 66  Q
    ||||||||||||||||| ||||||||||| |||| |   |||  |||||||||||||||| |||||    
T  25811847 tgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 25811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 33635909 - 33635942
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  33635909 tgagtatgagagagaaaattgtcacaaaagttgt 33635942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 3199023 - 3198963
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||||| ||||||| |||    |||||||||||||||||||||    
T  3199023 tgagtatgagagagaaagttgtcataaaaattatcaccaaatgaatgttcaaatatcattt 3198963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 11547537 - 11547597
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||  ||||| ||||||||  ||| |||||||||||| ||||    
T  11547537 tgagtatgagagagaaaattgttgcaaaagttgtcattaaatggatgttcaaatattattt 11547597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 25142564 - 25142592
Alignment:
Q  6 atgagagagaaaattgtcacaaaaattgt 34  Q
    |||||||||||||||||||||||||||||    
T  25142564 atgagagagaaaattgtcacaaaaattgt 25142592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 32459529 - 32459585
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  32459529 tatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 32459585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 34047449 - 34047385
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcat 65  Q
    ||||||||||||||||| ||||||||||| |||| |   |||  |||||||||||||||| ||||    
T  34047449 tgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 34047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 7627911 - 7627846
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcatttttcat 65  Q
    |||||||||||||||||||| ||||||||||| |||||  |||||| |||||||||||||| ||||    
T  7627911 tgagtatgagagagaaaattatcacaaaaattatcattaaatgaatattcaaatatcatttctcat 7627846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40348856 - 40348797
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||||||||||||||| | |   |||| ||||||||||||||||    
T  40348856 tgagtatgagagagaaaattgtcacaaaaattataaaaaatgattgttcaaatatcattt 40348797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 50050696 - 50050641
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||||||||||||   || | ||||||||||||||||    
T  50050696 tatgagagagaaaattgtcacaaaaattgtcaaaaataattgttcaaatatcattt 50050641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 33860710 - 33860650
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||||||||||    ||| |||||||||||||||||    
T  33860710 tgagtatgagagagaaagttgtcacaaaaattgtcaccaaatggatgttcaaatatcattt 33860650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 38519856 - 38519792
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtc-attgatgaatgttcaaatatcatttttca 64  Q
    ||||||||||||||||| ||||||||||||||||| |   |||  ||||||||||||||||||||    
T  38519856 tgagtatgagagagaaagttgtcacaaaaattgtcaaaaaatggttgttcaaatatcatttttca 38519792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 65
Target Start/End: Complemental strand, 47240879 - 47240815
Alignment:
Q  2 gagtatgagagagaaaattgtcacaaaaattgtc-attgatgaatgttcaaatatcatttttcat 65  Q
    |||||||||||||||| ||||  ||||||||||| ||  ||||||||||||||||||||| ||||    
T  47240879 gagtatgagagagaaagttgttgcaaaaattgtcaataaatgaatgttcaaatatcatttatcat 47240815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 56557796 - 56557760
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  56557796 tgagtatgagagagaaaattgtcacaaaagttgtcat 56557760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 2268516 - 2268575
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||| |   ||| |||||||||||||||||    
T  2268516 tgagtatgagagagaaagttgtcacaaaagttgttaaaaatggatgttcaaatatcattt 2268575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 65
Target Start/End: Complemental strand, 14443259 - 14443196
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtc-attgatgaatgttcaaatatcatttttcat 65  Q
    ||||||||||||||||||||||||||| ||||| |   |||| |||||||||||||||| ||||    
T  14443259 agtatgagagagaaaattgtcacaaaagttgtcaaaaaatgattgttcaaatatcatttctcat 14443196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 37297111 - 37297052
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||||||||| |||| |   |||  ||||||||||||||||    
T  37297111 tgagtatgagagagaaaattgtcacaaaagttgtaaaaaatggttgttcaaatatcattt 37297052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 45083043 - 45082984
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||| |||||||| ||||||   |||  ||||||||||||||||    
T  45083043 tgagtatgagagagaaaattatcacaaaagttgtcaaaaatggttgttcaaatatcattt 45082984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 439268 - 439334
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcatttttcatt 66  Q
    ||||||||||||||||||||||  | ||||||||||||  ||| |||||||||||| |||| |||||    
T  439268 tgagtatgagagagaaaattgttgcgaaaattgtcattaaatggatgttcaaatattatttctcatt 439334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 149493 - 149558
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattga-tgaatgttcaaatatcatttttcat 65  Q
    ||||||||||||||||| |||||||||||||| |||   | ||| |||||||||||||||| ||||    
T  149493 tgagtatgagagagaaagttgtcacaaaaattatcaaaaagtgattgttcaaatatcatttctcat 149558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 22027450 - 22027479
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaa 30  Q
    ||||||||||||||||||||||||||||||    
T  22027450 tgagtatgagagagaaaattgtcacaaaaa 22027479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44257738 - 44257771
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  44257738 tgagtatgagagagaaagttgtcacaaaaattgt 44257771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 56474772 - 56474805
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||| ||||||||||||||||||||||||||    
T  56474772 tgagtataagagagaaaattgtcacaaaaattgt 56474805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 9362690 - 9362746
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||| ||||| ||||||||||| ||||||||  ||| |||||||||||||||||    
T  9362690 tatgagatagaaagttgtcacaaaagttgtcattaaatggatgttcaaatatcattt 9362746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13139211 - 13139151
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||||| ||||||| ||||   ||| |||||||||||||||||    
T  13139211 tgagtatgagagagaaagttgtcataaaaattatcataaaatggatgttcaaatatcattt 13139151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30170028 - 30170064
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  30170028 tgagtatgagagagaaagttgtcacaaaagttgtcat 30170064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39158168 - 39158108
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtc-attgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||||||||||||| || |   |||| ||||||||||||||||    
T  39158168 tgagtatgagagagaaagttgtcacaaaaattatcaaaaaatgattgttcaaatatcattt 39158108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 40609673 - 40609613
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| || |||||  ||| |||||||||||| ||||    
T  40609673 tgagtatgagagagaaagttgtcacaaaagttatcattaaatggatgttcaaatatgattt 40609613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 47288144 - 47288112
Alignment:
Q  2 gagtatgagagagaaaattgtcacaaaaattgt 34  Q
    |||||||||||||||| ||||||||||||||||    
T  47288144 gagtatgagagagaaagttgtcacaaaaattgt 47288112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 48649580 - 48649548
Alignment:
Q  2 gagtatgagagagaaaattgtcacaaaaattgt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  48649580 gagtatgagagagaaaattgtcacaaaagttgt 48649548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 5864262 - 5864206
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||    
T  5864262 tatgagagagaaaattgttacaaaaattatcactagatgaatgttcaaatatcattt 5864206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41600372 - 41600312
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtc-attgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| ||||| ||  |||||||||||||||||||||    
T  41600372 tgagtatgagagagaaagttgtcacaaaagttgtcaataaatgaatgttcaaatatcattt 41600312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 45529254 - 45529314
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||| ||||||||||||| |  |||||||||||||||||||||    
T  45529254 tgagtatgagagagaaagttgttacaaaaattgtcactaaatgaatgttcaaatatcattt 45529314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 9549207 - 9549270
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcatttttc 63  Q
    ||||||||||||||||||||||||||||| ||||||    ||| ||||||||||||||||||||    
T  9549207 tgagtatgagagagaaaattgtcacaaaagttgtcacaaaatggatgttcaaatatcatttttc 9549270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 44825505 - 44825443
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttc 63  Q
    ||||||||||||| ||||||||||||||| ||||||   |||| ||||||| |||||||||||    
T  44825505 tgagtatgagagataaaattgtcacaaaagttgtcaaaaatgattgttcaattatcatttttc 44825443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9208129 - 9208069
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    |||||||||||||  || ||||||||||||||||||||  ||| |||||||||||||||||    
T  9208129 tgagtatgagagatgaagttgtcacaaaaattgtcattaaatggatgttcaaatatcattt 9208069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12735020 - 12735056
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12735020 tgagtatgagagagaaaattgtcacaaaagttgtcat 12735056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 31597011 - 31596951
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||| | |||||||||||||||||||   ||| |||||||||||||||||    
T  31597011 tgagtatgagagagagagttgtcacaaaaattgtcataaaatggatgttcaaatatcattt 31596951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6991816 - 6991851
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca 36  Q
    |||||||||||||||||||| |||||||||||||||    
T  6991816 tgagtatgagagagaaaattatcacaaaaattgtca 6991851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 18651433 - 18651400
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||||||||||||||| ||||    
T  18651433 tgagtatgagagagaaaattgtcacaaaagttgt 18651400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 11017868 - 11017808
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||  ||||| ||||||||  ||| |||||||||||||||||    
T  11017868 tgagtatgagagagaaagttgttgcaaaagttgtcattaaatggatgttcaaatatcattt 11017808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 12707212 - 12707152
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||| ||||| |||||||   ||| |||||||||||||||||    
T  12707212 tgagtatgagagagaaagttgtcgcaaaagttgtcataaaatggatgttcaaatatcattt 12707152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 60
Target Start/End: Complemental strand, 12783821 - 12783769
Alignment:
Q  9 agagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||| ||| ||||||||||||||||||||  ||| |||||||||||||||||    
T  12783821 agagataaagttgtcacaaaaattgtcattaaatggatgttcaaatatcattt 12783769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 34435748 - 34435780
Alignment:
Q  4 gtatgagagagaaaattgtcacaaaaattgtca 36  Q
    |||||||||||||||||||||||||| ||||||    
T  34435748 gtatgagagagaaaattgtcacaaaagttgtca 34435780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 36426028 - 36426088
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    |||||||||| |||||| ||||||||||| ||||| ||  ||| |||||||||||||||||    
T  36426028 tgagtatgagtgagaaagttgtcacaaaagttgtctttaaatggatgttcaaatatcattt 36426088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 7648454 - 7648395
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||| ||| ||||||||||||||||||   ||| |||||||||||||||||    
T  7648454 tgagtatgagagaaaaagttgtcacaaaaattgtcacaaatggatgttcaaatatcattt 7648395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 22888830 - 22888889
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||||||||||   |||  ||||||||||||||||    
T  22888830 tgagtatgagagagaaagttgtcacaaaaattgtcaaaaatggttgttcaaatatcattt 22888889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 41195646 - 41195587
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||||||||| ||||||   |||| | ||||||||||||||    
T  41195646 tgagtatgagagagaaaattgtcacaaaagttgtcaaaaatgattattcaaatatcattt 41195587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 433913 - 433853
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||  |||||||| ||| || |||||||||||||||||||||    
T  433913 tgagtatgagagagaaagttgttgcaaaaattatcacttaatgaatgttcaaatatcattt 433853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 6999076 - 6999136
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  6999076 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 6999136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11385022 - 11385058
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    |||||||||||||||||||| ||||||||||||||||    
T  11385022 tgagtatgagagagaaaattatcacaaaaattgtcat 11385058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13765463 - 13765403
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  13765463 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 13765403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Original strand, 30546381 - 30546437
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||||||||||| |||||  ||| || ||||||||||||||    
T  30546381 tatgagagagaaaattgtcacaaaaattatcattaaatggatattcaaatatcattt 30546437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 7502436 - 7502471
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7502436 tgagtatgagagagaaagttgtcacaaaaattgtca 7502471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 9207652 - 9207593
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||| |   |||| ||||||||||||||||    
T  9207652 tgagtatgagagagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcattt 9207593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 2 - 60
Target Start/End: Complemental strand, 44254661 - 44254602
Alignment:
Q  2 gagtatgagagagaaaattgtcacaaaaattgtcattg-atgaatgttcaaatatcattt 60  Q
    |||||||||||||||| |||| |||||| ||||||  | |||||||||||||||||||||    
T  44254661 gagtatgagagagaaagttgtaacaaaagttgtcacagaatgaatgttcaaatatcattt 44254602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 2563765 - 2563707
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  2563765 agtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 2563707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 7552614 - 7552557
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcatt--gatgaatgttcaaatatcattt 60  Q
    ||||||||||||| |||| |||||| ||||||||   |||||||||||||||||||||    
T  7552614 tatgagagagaaagttgttacaaaagttgtcattaaaatgaatgttcaaatatcattt 7552557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 25881607 - 25881573
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtc 35  Q
    ||||||||||||||||| |||||||||||||||||    
T  25881607 tgagtatgagagagaaagttgtcacaaaaattgtc 25881573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4061969 - 4062027
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    |||||||||||||||   ||||||||||||||||||||  ||| |||||||||||||||||    
T  4061969 tgagtatgagagagag--ttgtcacaaaaattgtcattaaatggatgttcaaatatcattt 4062027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 4384117 - 4384084
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  4384117 tgagtatgagagagaaagttgtcacaaaaattgt 4384084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Complemental strand, 8427613 - 8427580
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtca 36  Q
    ||||||||||||||| ||||||||||||||||||    
T  8427613 agtatgagagagaaagttgtcacaaaaattgtca 8427580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 8848704 - 8848765
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattttt 62  Q
    ||||| ||||||||||| ||||||||||| ||||||   |||  ||||||||||||||||||    
T  8848704 tgagtgtgagagagaaagttgtcacaaaagttgtcaaaaatggttgttcaaatatcattttt 8848765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 61
Target Start/End: Complemental strand, 32869885 - 32869828
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcattga-tgaatgttcaaatatcatttt 61  Q
    ||||| ||||||| |||||||||||||| ||||  | |||||||||||||||||||||    
T  32869885 tatgaaagagaaagttgtcacaaaaattatcataaaatgaatgttcaaatatcatttt 32869828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6170693 - 6170657
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  6170693 tgagtatgagagagaaagttgtcacaaaagttgtcat 6170657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 9634444 - 9634504
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||| ||| |||||||||||||| ||||   ||| |||||||||||||||||    
T  9634444 tgagtatgagagaaaaagttgtcacaaaaattatcataaaatggatgttcaaatatcattt 9634504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Complemental strand, 10711787 - 10711759
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaa 29  Q
    |||||||||||||||||||||||||||||    
T  10711787 tgagtatgagagagaaaattgtcacaaaa 10711759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14255365 - 14255329
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    |||||||| |||||||||||||||||||| |||||||    
T  14255365 tgagtatgtgagagaaaattgtcacaaaagttgtcat 14255329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 60
Target Start/End: Complemental strand, 15269920 - 15269864
Alignment:
Q  5 tatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||| ||||||| |||||||||||||||||||   ||| |||||||||||||||||    
T  15269920 tatgaaagagaaagttgtcacaaaaattgtcataaaatggatgttcaaatatcattt 15269864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 29684620 - 29684680
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||  |||||||||||| |  || ||||||||||||||||||    
T  29684620 tgagtatgagagagaaagttgttgcaaaaattgtcactaaataaatgttcaaatatcattt 29684680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 37731211 - 37731243
Alignment:
Q  4 gtatgagagagaaaattgtcacaaaaattgtca 36  Q
    |||||||||||||||||||||||||| ||||||    
T  37731211 gtatgagagagaaaattgtcacaaaagttgtca 37731243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38821429 - 38821393
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||| ||||||||||||||||| |||||||    
T  38821429 tgagtatgagaaagaaaattgtcacaaaagttgtcat 38821393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 29
Target Start/End: Original strand, 42607539 - 42607567
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaa 29  Q
    |||||||||||||||||||||||||||||    
T  42607539 tgagtatgagagagaaaattgtcacaaaa 42607567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46172415 - 46172474
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||| | |||||| |||||| | ||| |||||||||||||||||    
T  46172415 tgagtatgagagagaaaattattacaaaagttgtcactaatggatgttcaaatatcattt 46172474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 47215737 - 47215796
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcatt 59  Q
    ||||||||||||||||||||||||||||| ||||||||  ||  ||||||||||||||||    
T  47215737 tgagtatgagagagaaaattgtcacaaaagttgtcattatatagatgttcaaatatcatt 47215796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 52267266 - 52267228
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattg 39  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  52267266 tgagtatgagagagaaagttgtcacaaaaattgtcattg 52267228  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 60
Target Start/End: Original strand, 15083061 - 15083118
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||||||||||||| ||||||   |||  ||||||||||||||||    
T  15083061 agtatgagagagaaaattgtcacaaaagttgtcaaaaatggttgttcaaatatcattt 15083118  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 10890054 - 10890114
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  10890054 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 10890114  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 13489725 - 13489665
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  13489725 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 13489665  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15705070 - 15705130
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  15705070 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 15705130  T

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Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 51286375 - 51286435
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   || ||||||||||||||||||    
T  51286375 tgagtatgagagagaaagttgtcacaaaagttgtcataaaataaatgttcaaatatcattt 51286435  T

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Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 52362545 - 52362485
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||||| |||||||   ||| |||||||||||||||||    
T  52362545 tgagtatgagagagaaagttgtcacaaaagttgtcataaaatggatgttcaaatatcattt 52362485  T

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Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 8846036 - 8846005
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaatt 32  Q
    ||||||||||||||||||||||||||||||||    
T  8846036 tgagtatgagagagaaaattgtcacaaaaatt 8846005  T

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Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 50775165 - 50775200
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  50775165 tgagtatgagagagaaagttgtcacaaaaattgtca 50775200  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 50824804 - 50824773
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaatt 32  Q
    ||||||||||||||||||||||||||||||||    
T  50824804 tgagtatgagagagaaaattgtcacaaaaatt 50824773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 60
Target Start/End: Complemental strand, 26967267 - 26967213
Alignment:
Q  7 tgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||| ||||||||||| ||||||||  || ||||||||||||||||||    
T  26967267 tgagagagaaagttgtcacaaaagttgtcattaaattaatgttcaaatatcattt 26967213  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 1689454 - 1689421
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  1689454 tgagtatgagagagaaagttgtcacaaaaattgt 1689421  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 30536054 - 30536021
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgt 34  Q
    ||||||||||||||||| ||||||||||||||||    
T  30536054 tgagtatgagagagaaagttgtcacaaaaattgt 30536021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37685393 - 37685328
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcatt 66  Q
    ||||||||||||||||| ||||||||||| |||| |   |||  |||||||||||||||| |||||    
T  37685393 tgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37685328  T

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Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 37700125 - 37700190
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttcatt 66  Q
    ||||||||||||||||| ||||||||||| |||| |   |||  |||||||||||||||| |||||    
T  37700125 tgagtatgagagagaaagttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37700190  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 60
Target Start/End: Complemental strand, 45333630 - 45333573
Alignment:
Q  3 agtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||| ||||||||||| |||| |   |||| ||||||||||||||||    
T  45333630 agtatgagagagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcattt 45333573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 5771756 - 5771816
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattga-tgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| |||||||||||||| |||   | ||| ||||||||||||||||    
T  5771756 tgagtatgagagagaaagttgtcacaaaaattatcaaaaagtgattgttcaaatatcattt 5771816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 7171244 - 7171304
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcatt-gatgaatgttcaaatatcattt 60  Q
    ||||||||||||| ||| ||||||||||| ||||||||  ||  |||||||||||||||||    
T  7171244 tgagtatgagagataaagttgtcacaaaagttgtcattaaatagatgttcaaatatcattt 7171304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 16987001 - 16986941
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtca-ttgatgaatgttcaaatatcattt 60  Q
    ||||||||||||||||| ||||||||| |||| |||    |||||||||||||||||||||    
T  16987001 tgagtatgagagagaaagttgtcacaataattatcaccaaatgaatgttcaaatatcattt 16986941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32915080 - 32915116
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  32915080 tgagtatgagagagaaagttgtcacaaaagttgtcat 32915116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 34254359 - 34254419
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||||| ||| |||||||| || |||||||   |||||||||||||||||||||    
T  34254359 tgagtatgagagataaagttgtcacagaagttgtcataaaatgaatgttcaaatatcattt 34254419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 46543450 - 46543510
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    |||||||||||||||||||| ||||||| ||| ||||   ||| |||||||||||||||||    
T  46543450 tgagtatgagagagaaaattatcacaaagattatcataaaatggatgttcaaatatcattt 46543510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 47214271 - 47214235
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat 37  Q
    ||||||||||||||||| ||||||||||| |||||||    
T  47214271 tgagtatgagagagaaagttgtcacaaaagttgtcat 47214235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 52714909 - 52714969
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||| ||||||||||||||||| |||| ||   ||| |||||||||||||||||    
T  52714909 tgagtatgagaaagaaaattgtcacaaaagttgttataaaatggatgttcaaatatcattt 52714969  T

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Target: scaffold0199 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 8730 - 8668
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaatgttcaaatatcatttttc 63  Q
    ||||||||| ||||||| ||||||||||| |||| |   |||| |||||||||||||||||||    
T  8730 tgagtatgaaagagaaagttgtcacaaaagttgtaaaaaatgattgttcaaatatcatttttc 8668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 34802 - 34867
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcattgatgaa-tgttcaaatatcatttttcat 65  Q
    ||||||||||||||||| |||||| |||||||||||   || || ||| |||||||||||||||||    
T  34802 tgagtatgagagagaaagttgtcataaaaattgtcacaaattaattgtacaaatatcatttttcat 34867  T

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Target: scaffold0276 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0276
Description:

Target: scaffold0276; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 34
Target Start/End: Complemental strand, 1706 - 1674
Alignment:
Q  2 gagtatgagagagaaaattgtcacaaaaattgt 34  Q
    |||||||||||||||||||||||||||| ||||    
T  1706 gagtatgagagagaaaattgtcacaaaagttgt 1674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0136 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 38488 - 38428
Alignment:
Q  1 tgagtatgagagagaaaattgtcacaaaaattgtcat-tgatgaatgttcaaatatcattt 60  Q
    ||||||||||| ||||| ||||||||||| |||||||   |||||||||||||||| ||||    
T  38488 tgagtatgagaaagaaagttgtcacaaaagttgtcataaaatgaatgttcaaatattattt 38428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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