View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7209_low_10 (Length: 243)
Name: NF7209_low_10
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7209_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 38679099 - 38679327
Alignment:
| Q |
1 |
catcatctgagaagaacagcaattaaatatggaattattgattgagtttagcaatacaagtcttcgggcaatcctcgtacttgtgatactgcagatgggg |
100 |
Q |
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| T |
38679099 |
catcatctgagaagaacagcaattaaatatggaattattgattgagtttagcaatacaagtcttcgggcaatcctcgtacttgtgatactgcagatgggg |
38679198 |
T |
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| Q |
101 |
aaaattggtttgaacctgtgcgtttctttctctcgacttttcatgtattttagtatgcgtataactttgatatttgtttcacctgtgtacctgcattgtt |
200 |
Q |
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| T |
38679199 |
aaaattggtttgaacctgtgcgtttctttctctcgacttttcatgtattttagtatgcgtataactttgatatttgtttcacctgtgtacctgcattgtt |
38679298 |
T |
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| Q |
201 |
tctcagattttaggtagcaagtggtatga |
229 |
Q |
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| T |
38679299 |
tctcagattttaggtagcaagtggtatga |
38679327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 68 - 229
Target Start/End: Complemental strand, 38664704 - 38664543
Alignment:
| Q |
68 |
gcaatcctcgtacttgtgatactgcagatggggaaaattggtttgaacctgtgcgtttctttctctcgacttttcatgtattttagtatgcgtataactt |
167 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||| |||| |
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| T |
38664704 |
gcaatcctcgtacttgtgacactgcagatggggagaattggtttgaacctgtttgtttctttctctcgacttttcatgtcttttactatgcgtatgactt |
38664605 |
T |
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| Q |
168 |
tgatatttgtttcacctgtgtacctgcattgtttctcagattttaggtagcaagtggtatga |
229 |
Q |
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| T |
38664604 |
tggtatttgtttcacctgtgtacctgcattgtttctcagattttaggtagcaagtggtatga |
38664543 |
T |
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