View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7209_low_13 (Length: 222)

Name: NF7209_low_13
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7209_low_13
NF7209_low_13
[»] chr2 (9 HSPs)
chr2 (120-222)||(9477197-9477297)
chr2 (56-121)||(9476566-9476631)
chr2 (1-57)||(12256758-12256814)
chr2 (1-57)||(42843120-42843176)
chr2 (1-58)||(40263415-40263472)
chr2 (1-57)||(3555079-3555135)
chr2 (1-58)||(4651544-4651601)
chr2 (16-57)||(6904285-6904326)
chr2 (6-57)||(42224050-42224101)
[»] chr4 (11 HSPs)
chr4 (1-59)||(7509447-7509505)
chr4 (1-59)||(6243532-6243590)
chr4 (1-57)||(9768695-9768751)
chr4 (1-57)||(27071017-27071073)
chr4 (1-57)||(27151103-27151159)
chr4 (1-57)||(4943174-4943230)
chr4 (1-59)||(5943854-5943912)
chr4 (11-57)||(36353313-36353359)
chr4 (11-57)||(48425926-48425972)
chr4 (23-57)||(25887402-25887436)
chr4 (16-58)||(27024633-27024675)
[»] chr1 (17 HSPs)
chr1 (1-57)||(13496522-13496578)
chr1 (1-59)||(24455411-24455469)
chr1 (1-66)||(32049735-32049800)
chr1 (1-57)||(42435651-42435707)
chr1 (1-59)||(49004872-49004930)
chr1 (1-57)||(18410217-18410273)
chr1 (1-59)||(2023037-2023095)
chr1 (1-58)||(24775444-24775501)
chr1 (1-58)||(38984651-38984708)
chr1 (1-58)||(45536865-45536922)
chr1 (1-57)||(28645884-28645940)
chr1 (1-57)||(32524079-32524135)
chr1 (1-57)||(43643276-43643332)
chr1 (4-58)||(20274401-20274455)
chr1 (16-57)||(42829976-42830017)
chr1 (1-57)||(2840351-2840407)
chr1 (1-57)||(21332952-21333008)
[»] chr6 (7 HSPs)
chr6 (1-60)||(14175402-14175461)
chr6 (1-60)||(14179938-14179997)
chr6 (1-60)||(4271718-4271777)
chr6 (1-57)||(18903228-18903284)
chr6 (1-57)||(22510273-22510329)
chr6 (1-59)||(19420585-19420643)
chr6 (1-57)||(19420199-19420255)
[»] chr8 (12 HSPs)
chr8 (1-59)||(16428145-16428203)
chr8 (1-57)||(22513813-22513869)
chr8 (1-57)||(40557396-40557452)
chr8 (4-57)||(13279853-13279906)
chr8 (1-57)||(33441348-33441404)
chr8 (1-59)||(36896661-36896719)
chr8 (1-57)||(6416574-6416630)
chr8 (1-57)||(18385708-18385764)
chr8 (1-58)||(12501777-12501834)
chr8 (6-57)||(39622212-39622263)
chr8 (1-57)||(29089219-29089275)
chr8 (11-52)||(16888896-16888937)
[»] chr3 (16 HSPs)
chr3 (1-59)||(44516951-44517009)
chr3 (4-61)||(35350913-35350970)
chr3 (4-58)||(1003121-1003175)
chr3 (1-59)||(54610145-54610203)
chr3 (1-54)||(30106651-30106704)
chr3 (1-57)||(10122786-10122842)
chr3 (1-57)||(38190564-38190620)
chr3 (1-57)||(43844791-43844847)
chr3 (1-57)||(22397814-22397870)
chr3 (1-57)||(26706221-26706277)
chr3 (1-57)||(33957290-33957346)
chr3 (6-60)||(3345042-3345096)
chr3 (23-60)||(28418480-28418517)
chr3 (1-52)||(33955915-33955966)
chr3 (11-57)||(37964781-37964827)
chr3 (1-57)||(23302204-23302260)
[»] chr7 (11 HSPs)
chr7 (1-57)||(18784714-18784770)
chr7 (1-57)||(35113343-35113399)
chr7 (1-57)||(37316186-37316242)
chr7 (1-57)||(44045654-44045710)
chr7 (1-57)||(35504827-35504883)
chr7 (1-57)||(42046585-42046641)
chr7 (1-59)||(42049296-42049354)
chr7 (1-59)||(34643913-34643971)
chr7 (1-57)||(21954271-21954327)
chr7 (1-57)||(46804756-46804812)
chr7 (23-57)||(47400880-47400914)
[»] chr5 (14 HSPs)
chr5 (1-57)||(22721404-22721460)
chr5 (1-57)||(36789787-36789843)
chr5 (1-57)||(16475572-16475628)
chr5 (1-57)||(23107631-23107687)
chr5 (1-57)||(25336051-25336107)
chr5 (1-58)||(1212778-1212835)
chr5 (4-59)||(28969651-28969706)
chr5 (1-59)||(16478167-16478225)
chr5 (1-59)||(39565313-39565371)
chr5 (1-59)||(40830467-40830525)
chr5 (1-57)||(1598758-1598814)
chr5 (1-57)||(5812634-5812690)
chr5 (1-57)||(22497058-22497114)
chr5 (1-58)||(22387016-22387073)
[»] scaffold0088 (1 HSPs)
scaffold0088 (1-62)||(10638-10699)
[»] scaffold0009 (1 HSPs)
scaffold0009 (1-57)||(199004-199060)
[»] scaffold0368 (1 HSPs)
scaffold0368 (16-57)||(10032-10073)


Alignment Details
Target: chr2 (Bit Score: 72; Significance: 6e-33; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 120 - 222
Target Start/End: Original strand, 9477197 - 9477297
Alignment:
Q  120 ttatggagcccaaatgattaatgaacttgatcaaatgacaaataattcaagagacgcttctaagttcaattcttgaatgaaacaatttatttatttattc 219  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||   |||||||||||||  ||||||||||||||||||||||||    
T  9477197 ttatggagctcaaatgattaatgaacttgatcaaatgacaaataattcaagagactct--caagttcaattcttagatgaaacaatttatttatttattc 9477294  T
Q  220 ttt 222  Q
    |||    
T  9477295 ttt 9477297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 56 - 121
Target Start/End: Original strand, 9476566 - 9476631
Alignment:
Q  56 atatgtttttagaagcaccaagtgcatgtttgcttgagcgtttagtatatctatatgtacgttttt 121  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  9476566 atatgtttttagaagcaccaagtgcatgtttgcttgagcctttagtatatctatatgtacgttttt 9476631  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12256758 - 12256814
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12256758 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 12256814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 42843120 - 42843176
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  42843120 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 42843176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 40263472 - 40263415
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||| |||| ||||||||||| ||||||||| ||||||||||||||| ||||||||||    
T  40263472 aggagaggattttgaaataggctatttctaaaaactctaaattgttattataaagata 40263415  T

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Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3555079 - 3555135
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  3555079 aggagaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 3555135  T

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Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 4651544 - 4651601
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||| |||| ||||||||||  | ||||||| ||||||||||||||||||||||||||    
T  4651544 aggagaggattttgaaatagactgtttctaaaaactctaaattgttagtataaagata 4651601  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 6904326 - 6904285
Alignment:
Q  16 aataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  6904326 aataggctatttctaaaaactctaaattgttagtataaagat 6904285  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 57
Target Start/End: Complemental strand, 42224101 - 42224050
Alignment:
Q  6 aggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  42224101 aggaatttggaataagctatttctaaaaactttaaattgttagtataaagat 42224050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 7509505 - 7509447
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7509505 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 7509447  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 6243532 - 6243590
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6243532 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 6243590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 9768695 - 9768751
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9768695 aggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagat 9768751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27071073 - 27071017
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27071073 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27071017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 27151159 - 27151103
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  27151159 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 27151103  T

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Target: chr4; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 4943230 - 4943174
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  4943230 aggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 4943174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 5943912 - 5943854
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  5943912 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 5943854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Original strand, 36353313 - 36353359
Alignment:
Q  11 tttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||| ||||| ||| |||||||||||||||||||||||||    
T  36353313 tttgaaataggctatttttaaaaactctaaattgttagtataaagat 36353359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 48425972 - 48425926
Alignment:
Q  11 tttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||| ||||||||| ||||||||||||||| |||||||||    
T  48425972 tttgaaataggctatttctaaaaactctaaattgttaatataaagat 48425926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Complemental strand, 25887436 - 25887402
Alignment:
Q  23 tatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||| |||||||||||||||||||||||||    
T  25887436 tatttctaaaaactctaaattgttagtataaagat 25887402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 58
Target Start/End: Original strand, 27024633 - 27024675
Alignment:
Q  16 aataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||||| ||||||||| ||||||||||||||||||| ||||||    
T  27024633 aataggctatttctaaaaactctaaattgttagtatgaagata 27024675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 6e-24; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13496578 - 13496522
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13496578 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 13496522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 24455411 - 24455469
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  24455411 aggaaaggaatttgaaatagattatttctaagaactctaaattgttagtataaagatat 24455469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 32049800 - 32049735
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatgttttta 66  Q
    |||||| |||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32049800 aggaaatgaatttaaaataggctatttctaagaactctaaattgttagtataaagatatgttttta 32049735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42435707 - 42435651
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42435707 aggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42435651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 49004930 - 49004872
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    ||||||||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  49004930 aggaaaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 49004872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 18410273 - 18410217
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||||||||||||||||    
T  18410273 aggaaaggattttgaaatagactatttctaaaaactctaaattgttagtataaagat 18410217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 2023095 - 2023037
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  2023095 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 2023037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 24775501 - 24775444
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||| |||| |||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  24775501 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagata 24775444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 38984651 - 38984708
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||| |||| ||||||||||| | ||||||| ||||||||||||||||||||||||||    
T  38984651 aggagaggattttgaaataggctgtttctaaaaactctaaattgttagtataaagata 38984708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 45536922 - 45536865
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    ||||||| | |||| |||||| ||||||||| ||||||||||||||||||||||||||    
T  45536922 aggaaagaattttggaataggctatttctaaaaactctaaattgttagtataaagata 45536865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28645884 - 28645940
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  28645884 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 28645940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 32524079 - 32524135
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  32524079 aggagaggattttaaaataggctatttctaaaaactctaaattgttagtataaagat 32524135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43643276 - 43643332
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  43643276 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 43643332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 58
Target Start/End: Complemental strand, 20274455 - 20274401
Alignment:
Q  4 aaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||||| |||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  20274455 aaaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 20274401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 42829976 - 42830017
Alignment:
Q  16 aataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  42829976 aataggctatttctaaaaactctaaattgttagtataaagat 42830017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2840407 - 2840351
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| | ||||||| |||||||||||||||||||||||||    
T  2840407 aggagaggattttggaataggctgtttctaaaaactctaaattgttagtataaagat 2840351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21332952 - 21333008
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| ||| || ||||||||| |||||||||||||||||||||||||    
T  21332952 aggagaggattttggaatgggctatttctaaaaactctaaattgttagtataaagat 21333008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14175461 - 14175402
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 60  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14175461 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatatg 14175402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 14179997 - 14179938
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 60  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  14179997 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatatg 14179938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 4271718 - 4271777
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 60  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  4271718 aggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagatatg 4271777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18903228 - 18903284
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  18903228 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18903284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22510329 - 22510273
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  22510329 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22510273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 19420643 - 19420585
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| |||| |||| | ||||||||| ||||||||||| |||||||||||||||    
T  19420643 aggagaggattttggaataagctatttctaaaaactctaaattattagtataaagatat 19420585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19420199 - 19420255
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  19420199 aggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 19420255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 9e-23; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16428203 - 16428145
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16428203 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 16428145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22513869 - 22513813
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  22513869 aggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 22513813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 40557452 - 40557396
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  40557452 aggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 40557396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 13279853 - 13279906
Alignment:
Q  4 aaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||||| ||||||||| |||||||||||||||||||||||||    
T  13279853 aaaggaatttgaaataggctatttctaaaaactctaaattgttagtataaagat 13279906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33441404 - 33441348
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  33441404 aggaaaggaatttgaaataagctatttctaaaaactctaaattgttagtataaagat 33441348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 36896661 - 36896719
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    ||||||||||||| ||||||  ||||||||| |||||||||||||||||||||||||||    
T  36896661 aggaaaggaatttaaaatagactatttctaaaaactctaaattgttagtataaagatat 36896719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6416630 - 6416574
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  6416630 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 6416574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18385708 - 18385764
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  18385708 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 18385764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 12501777 - 12501834
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||| |||||||||    
T  12501777 aggagaggattttgaaataggctatttctaaaaactctaaattgttagcataaagata 12501834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 6 - 57
Target Start/End: Original strand, 39622212 - 39622263
Alignment:
Q  6 aggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  39622212 aggattttggaataggctatttctaaaaactctaaattgttagtataaagat 39622263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 29089219 - 29089275
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| ||||  |||||||||| |||||||||||||||||||||||||    
T  29089219 aggagaggattttggaataaattatttctaaaaactctaaattgttagtataaagat 29089275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 11 - 52
Target Start/End: Original strand, 16888896 - 16888937
Alignment:
Q  11 tttgaaataggttatttctaagaactctaaattgttagtata 52  Q
    ||||||||| | ||||||||| ||||||||||||||||||||    
T  16888896 tttgaaataagctatttctaaaaactctaaattgttagtata 16888937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 44516951 - 44517009
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  44516951 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatat 44517009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 4 - 61
Target Start/End: Original strand, 35350913 - 35350970
Alignment:
Q  4 aaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatgt 61  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  35350913 aaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagatatgt 35350970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 58
Target Start/End: Original strand, 1003121 - 1003175
Alignment:
Q  4 aaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  1003121 aaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagata 1003175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 54610203 - 54610145
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  54610203 aggaaaggaatttgaaataggctatttttaagaactctaaattgttagtataaagatat 54610145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30106704 - 30106651
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaa 54  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  30106704 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaa 30106651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10122786 - 10122842
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  10122786 aggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 10122842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 38190564 - 38190620
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  38190564 aggaaaggaatttaaaataggctatttctaagaactctaaattgttagtataaagat 38190620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 43844847 - 43844791
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  43844847 aggaaaggaatttgaaataggctatttgtaagaactctaaattgttagtataaagat 43844791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 22397870 - 22397814
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||| ||||||||| | ||||||||| |||||||||||||||||||||||||    
T  22397870 aggaaaggattttgaaataagctatttctaaaaactctaaattgttagtataaagat 22397814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 26706221 - 26706277
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||| ||||| ||||||  |||||||||||||||||||||||||||||||||||    
T  26706221 aggaaagaaatttaaaatagactatttctaagaactctaaattgttagtataaagat 26706277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 33957290 - 33957346
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||    
T  33957290 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagat 33957346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 6 - 60
Target Start/End: Original strand, 3345042 - 3345096
Alignment:
Q  6 aggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatg 60  Q
    |||| |||| |||||| ||||||||| |||| |||||||||||||||||||||||    
T  3345042 aggattttggaataggctatttctaaaaactttaaattgttagtataaagatatg 3345096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 23 - 60
Target Start/End: Original strand, 28418480 - 28418517
Alignment:
Q  23 tatttctaagaactctaaattgttagtataaagatatg 60  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  28418480 tatttctaaaaactctaaattgttagtataaagatatg 28418517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 33955915 - 33955966
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtata 52  Q
    |||| |||| |||| |||||| ||||||||| ||||||||||||||||||||    
T  33955915 aggagaggattttggaataggctatttctaaaaactctaaattgttagtata 33955966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 57
Target Start/End: Complemental strand, 37964827 - 37964781
Alignment:
Q  11 tttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||||| ||||||||| ||||||||||||||| |||||||||    
T  37964827 tttggaataggctatttctaaaaactctaaattgttaatataaagat 37964781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 23302260 - 23302204
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||| | ||||||||| |||| ||||||||||||||||||||    
T  23302260 aggagaggattttggaataagctatttctaaaaactttaaattgttagtataaagat 23302204  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 18784714 - 18784770
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  18784714 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 18784770  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35113399 - 35113343
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  35113399 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 35113343  T

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Target: chr7; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37316186 - 37316242
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  37316186 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 37316242  T

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Target: chr7; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44045654 - 44045710
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  44045654 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 44045710  T

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Target: chr7; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 35504883 - 35504827
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  35504883 aggaaaggaatttgaaataggctattgctaagaactctaaattgttagtataaagat 35504827  T

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Target: chr7; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 42046641 - 42046585
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  42046641 aggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 42046585  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42049354 - 42049296
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  42049354 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 42049296  T

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Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 34643913 - 34643971
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||| ||||    
T  34643913 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaaaatat 34643971  T

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Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 21954271 - 21954327
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  21954271 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 21954327  T

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Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 46804812 - 46804756
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  46804812 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 46804756  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 57
Target Start/End: Original strand, 47400880 - 47400914
Alignment:
Q  23 tatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||| |||||||||||||||||||||||||    
T  47400880 tatttctaaaaactctaaattgttagtataaagat 47400914  T

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Target: chr5 (Bit Score: 53; Significance: 1e-21; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22721404 - 22721460
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  22721404 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 22721460  T

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Target: chr5; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36789787 - 36789843
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  36789787 aggaaaggaatttgaaataggctatttctaagaactctaaattgttagtataaagat 36789843  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 16475628 - 16475572
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  16475628 aggaaaggaatttgaattaggctatttctaagaactctaaattgttagtataaagat 16475572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 23107631 - 23107687
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||    
T  23107631 aggaaaggaatttgaactaggctatttctaagaactctaaattgttagtataaagat 23107687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 25336107 - 25336051
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    ||||||||||||||||||||  |||||||||||||||||||||||||||||||||||    
T  25336107 aggaaaggaatttgaaatagactatttctaagaactctaaattgttagtataaagat 25336051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 1212778 - 1212835
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||    
T  1212778 aggaaaggaatttgaattaggctatttctaagaactctagattgttagtataaagata 1212835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 28969651 - 28969706
Alignment:
Q  4 aaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    ||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||    
T  28969651 aaaggaatttgaattaggctatttctaaaaactctaaattgttagtataaagatat 28969706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 16478225 - 16478167
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  16478225 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatat 16478167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 39565313 - 39565371
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  39565313 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 39565371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 40830525 - 40830467
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatat 59  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||||    
T  40830525 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagatat 40830467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 1598758 - 1598814
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  1598758 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 1598814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 5812634 - 5812690
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  5812634 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 5812690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 22497058 - 22497114
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| |||| |||||| ||||||||| |||||||||||||||||||||||||    
T  22497058 aggagaggattttggaataggctatttctaaaaactctaaattgttagtataaagat 22497114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 22387016 - 22387073
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagata 58  Q
    |||| |||| |||| |||| | ||||||||| ||||||||||||||||||||||||||    
T  22387016 aggagaggattttggaataagctatttctaaaaactctaaattgttagtataaagata 22387073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0088 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 10699 - 10638
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagatatgtt 62  Q
    |||| |||| ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  10699 aggagaggattttgaaataggctatttctaaaaactctaaattgttagtataaagatttgtt 10638  T

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Target: scaffold0009 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 199004 - 199060
Alignment:
Q  1 aggaaaggaatttgaaataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||| |||| ||| ||||||| ||||||||| |||||||||||||||||||||||||    
T  199004 aggagaggatttttaaataggctatttctaaaaactctaaattgttagtataaagat 199060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 10032 - 10073
Alignment:
Q  16 aataggttatttctaagaactctaaattgttagtataaagat 57  Q
    |||||| ||||||||| |||||||||||||||||||||||||    
T  10032 aataggctatttctaaaaactctaaattgttagtataaagat 10073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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