View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7209_low_14 (Length: 219)
Name: NF7209_low_14
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7209_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 119; Significance: 6e-61; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 176
Target Start/End: Complemental strand, 8794844 - 8794684
Alignment:
| Q |
21 |
actcatctctaatacatatatcaatacccactttattatcaagagagaagaaagaaacatcaatatta------acatgtcccaccgatggtttatgcca |
114 |
Q |
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| T |
8794844 |
actcatctctaatacatatatcaatatccactttattatcaagagagaagaaagaaacat-aatattacacttaacatgtcccaccgatggtttatgcca |
8794746 |
T |
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| Q |
115 |
tcctcaaatagtagtatattggtctgattcggattagataaaatacgatttgtctaactgat |
176 |
Q |
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| T |
8794745 |
tcctcaaatagtattatattggtctgattcggattagataaaatacgatttgtttaactgat |
8794684 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 48225222 - 48225154
Alignment:
| Q |
20 |
cactcatctctaatacatatatcaatacccactttattatcaagagagaagaaagaaacatcaatatta |
88 |
Q |
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| T |
48225222 |
cactcatctctaatgcttataccaatccctactatattttgaaaagaggagaaagaaacatcaatatta |
48225154 |
T |
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