View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7209_low_3 (Length: 371)
Name: NF7209_low_3
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7209_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 34432257 - 34432611
Alignment:
| Q |
1 |
agttggttctgtttcaccattgaattttgcagatttaaggtcccaaaagacatcaactgcttttccatctaccgtgaaccgttttgaaccttgtttcctc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34432257 |
agttggttctgtttcaccattgaattttgcagatttaaggtcccaaaagacatcaactgcttttccatctaccgtgaaccgttttgaaccttgtttcctc |
34432356 |
T |
|
| Q |
101 |
caaaagtaccatggctttagctcaaccttgcagctatattgagtttccttttcagggttttccactgttactgataagccatgaagcatcaagtttttgc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34432357 |
caaaagtaccatggctttagctcaaccttgcagctatattgagtttccttttcagggttttccactgttactgataagccatgaagcatcaagtttttgc |
34432456 |
T |
|
| Q |
201 |
accatgtgattgtgatcaaactgcagtgaccagctaactttgttctgtatactgacatgtaaacggttttacctgaacgtatcacagctccatgatgacg |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
34432457 |
accatgtgattgtgatcaaacggcagtgaccagctaactttgttctgtatactgacatgtaaacggttttacctgaacgtatcacagctccatgatgatg |
34432556 |
T |
|
| Q |
301 |
atgatcatcacttgcagaagagaaacatgcaggaattccaattgagtcttgcatt |
355 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34432557 |
atgatcatcacttgcagaagagaaacatgcaggaattccaattgagtcttgcatt |
34432611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 8e-46; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 43403184 - 43403447
Alignment:
| Q |
1 |
agttggttctgtttcaccattgaattttgcagatttaaggtcccaaaagacatcaactgcttt---tccatctaccgtgaaccgttttgaaccttgtttc |
97 |
Q |
| |
|
||||||||||||||| || |||||||| |||| |||||||||||| || | ||||| ||||| |||||| || | |||||||||||||||||||| |
|
|
| T |
43403184 |
agttggttctgtttctccgttgaatttagcagctttaaggtcccagaaaatgtcaacagctttgtttccatcaactataaaccgttttgaaccttgtttt |
43403283 |
T |
|
| Q |
98 |
ctccaaaagtaccatggctttagctcaaccttgcagctatattgagtttccttttcagggttttccactgttactgataagccatgaagcatcaagtttt |
197 |
Q |
| |
|
|||||||| |||||||||||||| ||||| |||||| ||||||| | ||| ||| || ||| |||| || ||||| |||||||||| |||||||| |
|
|
| T |
43403284 |
ctccaaaaataccatggctttagttcaactttgcaggtatattgggcttctccttctggaccttctactgatattgatagtccatgaagcaacaagtttt |
43403383 |
T |
|
| Q |
198 |
tgcaccatgtgattgtgatcaaactgcagtgaccagctaactttgttctgtatactgacatgta |
261 |
Q |
| |
|
||||||||||||| || ||||||| ||| ||| |||||| |||||||||||||||||||||||| |
|
|
| T |
43403384 |
tgcaccatgtgatggttatcaaacggcaatgatcagctacctttgttctgtatactgacatgta |
43403447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 174 - 285
Target Start/End: Complemental strand, 26100171 - 26100060
Alignment:
| Q |
174 |
ataagccatgaagcatcaagtttttgcaccatgtgattgtgatcaaactgcagtgaccagctaactttgttctgtatactgacatgtaaacggttttacc |
273 |
Q |
| |
|
|||| |||||||| | |||||||| |||| |||||||||| ||||||| ||||| || ||| | || |||||||||||||||||||||||||| |||| |
|
|
| T |
26100171 |
ataaaccatgaagaagcaagttttcgcactatgtgattgtaatcaaacgagagtgatcatctaccattcttctgtatactgacatgtaaacggttctacc |
26100072 |
T |
|
| Q |
274 |
tgaacgtatcac |
285 |
Q |
| |
|
| ||||| |||| |
|
|
| T |
26100071 |
tcaacgtgtcac |
26100060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University