View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7209_low_5 (Length: 327)

Name: NF7209_low_5
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7209_low_5
NF7209_low_5
[»] scaffold1879 (1 HSPs)
scaffold1879 (97-310)||(61-274)
[»] chr6 (14 HSPs)
chr6 (97-310)||(18010708-18010921)
chr6 (97-300)||(24856384-24856586)
chr6 (103-298)||(21561595-21561790)
chr6 (97-298)||(18447082-18447282)
chr6 (103-290)||(11218491-11218678)
chr6 (97-264)||(22166692-22166861)
chr6 (107-298)||(25966518-25966709)
chr6 (97-264)||(20017377-20017546)
chr6 (107-208)||(22768279-22768380)
chr6 (107-198)||(20169207-20169298)
chr6 (107-262)||(30672896-30673050)
chr6 (109-289)||(23518889-23519069)
chr6 (192-289)||(19586808-19586905)
chr6 (231-289)||(29685447-29685505)
[»] chr2 (19 HSPs)
chr2 (97-310)||(25145930-25146143)
chr2 (97-300)||(22045800-22046002)
chr2 (97-300)||(25356384-25356586)
chr2 (97-300)||(27626466-27626668)
chr2 (97-300)||(12754-12956)
chr2 (97-300)||(24170206-24170409)
chr2 (97-262)||(24821241-24821407)
chr2 (97-298)||(26192761-26192962)
chr2 (97-298)||(17867188-17867390)
chr2 (97-298)||(25368760-25368961)
chr2 (107-264)||(27769950-27770107)
chr2 (97-292)||(116384-116581)
chr2 (97-264)||(16774565-16774734)
chr2 (97-264)||(23160512-23160681)
chr2 (97-264)||(23571769-23571938)
chr2 (97-208)||(24796432-24796545)
chr2 (97-264)||(27630415-27630584)
chr2 (107-254)||(25372134-25372281)
chr2 (109-208)||(25339253-25339352)
[»] scaffold0116 (1 HSPs)
scaffold0116 (97-301)||(38879-39083)
[»] chr8 (18 HSPs)
chr8 (97-300)||(22100765-22100967)
chr8 (97-300)||(21380965-21381167)
chr8 (97-300)||(22098095-22098297)
chr8 (97-300)||(16419740-16419942)
chr8 (97-300)||(22034670-22034872)
chr8 (97-299)||(21954952-21955153)
chr8 (97-300)||(8323991-8324193)
chr8 (97-300)||(8313340-8313542)
chr8 (97-298)||(11348086-11348288)
chr8 (97-300)||(21099952-21100155)
chr8 (107-298)||(22289899-22290089)
chr8 (97-298)||(21942593-21942794)
chr8 (97-298)||(19766371-19766572)
chr8 (97-298)||(22368831-22369032)
chr8 (97-264)||(21826293-21826462)
chr8 (97-298)||(29333484-29333685)
chr8 (107-256)||(22831958-22832107)
chr8 (109-216)||(21854914-21855021)
[»] chr7 (20 HSPs)
chr7 (97-300)||(8716736-8716938)
chr7 (97-300)||(14549968-14550170)
chr7 (97-300)||(18286497-18286699)
chr7 (97-298)||(48802998-48803199)
chr7 (97-300)||(13656805-13657007)
chr7 (97-300)||(16466755-16466957)
chr7 (97-298)||(824501-824702)
chr7 (106-298)||(20107150-20107342)
chr7 (97-296)||(15917908-15918107)
chr7 (97-294)||(15064639-15064836)
chr7 (97-264)||(13672765-13672931)
chr7 (97-298)||(16530918-16531121)
chr7 (97-298)||(16634541-16634744)
chr7 (97-262)||(16150642-16150807)
chr7 (107-298)||(16760940-16761131)
chr7 (97-216)||(18594406-18594527)
chr7 (97-216)||(18617157-18617278)
chr7 (109-289)||(8783239-8783419)
chr7 (109-289)||(4311620-4311800)
chr7 (192-289)||(5396024-5396121)
[»] chr5 (21 HSPs)
chr5 (97-300)||(15734406-15734608)
chr5 (97-300)||(22318624-22318826)
chr5 (109-300)||(23746923-23747114)
chr5 (97-300)||(25007923-25008125)
chr5 (97-300)||(20621035-20621237)
chr5 (97-298)||(25117283-25117486)
chr5 (97-298)||(25176374-25176577)
chr5 (97-298)||(30760779-30760982)
chr5 (107-298)||(20439313-20439504)
chr5 (97-262)||(18071821-18071986)
chr5 (97-262)||(20596979-20597144)
chr5 (97-262)||(20603276-20603441)
chr5 (104-298)||(22947305-22947499)
chr5 (97-262)||(20609595-20609760)
chr5 (97-262)||(20791922-20792087)
chr5 (109-264)||(24954328-24954483)
chr5 (97-298)||(26846541-26846735)
chr5 (97-187)||(21387268-21387358)
chr5 (221-298)||(21387181-21387258)
chr5 (115-289)||(18487207-18487381)
chr5 (115-289)||(22827903-22828077)
[»] chr3 (26 HSPs)
chr3 (97-300)||(7599228-7599430)
chr3 (97-300)||(13137309-13137511)
chr3 (97-300)||(13689539-13689741)
chr3 (97-300)||(15630096-15630298)
chr3 (97-300)||(10145883-10146085)
chr3 (97-300)||(13196569-13196771)
chr3 (97-300)||(12188215-12188417)
chr3 (109-300)||(13188568-13188759)
chr3 (113-300)||(16374634-16374821)
chr3 (97-300)||(12194629-12194831)
chr3 (98-262)||(20157593-20157757)
chr3 (97-298)||(15945489-15945692)
chr3 (108-298)||(12161214-12161404)
chr3 (97-298)||(3340356-3340559)
chr3 (97-293)||(13505652-13505850)
chr3 (97-262)||(4369584-4369749)
chr3 (97-262)||(22165443-22165608)
chr3 (97-297)||(13693754-13693954)
chr3 (107-262)||(17386666-17386821)
chr3 (97-298)||(10603672-10603873)
chr3 (148-300)||(14446755-14446907)
chr3 (97-208)||(15644043-15644156)
chr3 (141-298)||(3278344-3278501)
chr3 (97-197)||(10161325-10161427)
chr3 (97-262)||(16654627-16654792)
chr3 (112-289)||(3246657-3246834)
[»] scaffold0974 (1 HSPs)
scaffold0974 (98-295)||(1-197)
[»] chr1 (9 HSPs)
chr1 (97-300)||(20236353-20236555)
chr1 (97-298)||(19876814-19877014)
chr1 (107-264)||(20392400-20392557)
chr1 (97-262)||(3988998-3989163)
chr1 (97-300)||(20072071-20072274)
chr1 (97-208)||(21799811-21799924)
chr1 (106-298)||(8651899-8652090)
chr1 (106-259)||(8948700-8948853)
chr1 (192-289)||(21785664-21785761)
[»] scaffold0216 (1 HSPs)
scaffold0216 (103-298)||(10291-10486)
[»] scaffold0020 (2 HSPs)
scaffold0020 (97-300)||(115519-115720)
scaffold0020 (97-300)||(119823-120024)
[»] scaffold0117 (1 HSPs)
scaffold0117 (97-298)||(32717-32917)
[»] scaffold1620 (1 HSPs)
scaffold1620 (97-300)||(134-337)
[»] chr4 (8 HSPs)
chr4 (97-300)||(22109832-22110034)
chr4 (97-300)||(15253217-15253420)
chr4 (97-294)||(15864383-15864580)
chr4 (97-298)||(3353491-3353692)
chr4 (114-298)||(15261242-15261426)
chr4 (97-264)||(13821817-13821986)
chr4 (109-289)||(11497751-11497931)
chr4 (109-289)||(15348981-15349162)
[»] scaffold0473 (1 HSPs)
scaffold0473 (97-300)||(12910-13112)
[»] scaffold0018 (1 HSPs)
scaffold0018 (97-262)||(19407-19573)
[»] scaffold0004 (2 HSPs)
scaffold0004 (104-262)||(19121-19279)
scaffold0004 (97-264)||(253024-253191)
[»] scaffold0375 (1 HSPs)
scaffold0375 (97-298)||(11403-11604)
[»] scaffold0078 (1 HSPs)
scaffold0078 (97-298)||(29368-29571)
[»] scaffold0506 (1 HSPs)
scaffold0506 (103-262)||(3201-3360)
[»] scaffold1571 (1 HSPs)
scaffold1571 (161-300)||(1494-1633)
[»] scaffold0051 (1 HSPs)
scaffold0051 (103-298)||(25532-25727)
[»] scaffold0402 (1 HSPs)
scaffold0402 (97-298)||(6760-6961)
[»] scaffold0142 (1 HSPs)
scaffold0142 (97-262)||(22132-22297)
[»] scaffold0215 (1 HSPs)
scaffold0215 (97-300)||(8123-8327)
[»] scaffold0022 (1 HSPs)
scaffold0022 (97-293)||(24449-24647)
[»] scaffold0032 (1 HSPs)
scaffold0032 (104-262)||(90194-90352)
[»] scaffold1095 (1 HSPs)
scaffold1095 (97-295)||(2153-2351)
[»] scaffold0146 (1 HSPs)
scaffold0146 (97-298)||(21756-21958)
[»] scaffold0322 (1 HSPs)
scaffold0322 (97-211)||(7756-7869)
[»] scaffold0525 (1 HSPs)
scaffold0525 (97-262)||(1050-1215)
[»] scaffold0346 (1 HSPs)
scaffold0346 (97-297)||(4730-4930)
[»] scaffold0156 (1 HSPs)
scaffold0156 (97-297)||(7633-7833)
[»] scaffold0037 (2 HSPs)
scaffold0037 (97-264)||(44342-44507)
scaffold0037 (97-264)||(51731-51896)
[»] scaffold0230 (1 HSPs)
scaffold0230 (104-262)||(12391-12549)
[»] scaffold0029 (1 HSPs)
scaffold0029 (97-261)||(122283-122447)
[»] scaffold0026 (2 HSPs)
scaffold0026 (164-298)||(132501-132635)
scaffold0026 (109-289)||(17253-17433)
[»] scaffold0577 (2 HSPs)
scaffold0577 (195-300)||(4978-5083)
scaffold0577 (97-198)||(5589-5689)
[»] scaffold0404 (1 HSPs)
scaffold0404 (97-171)||(28-104)
[»] scaffold0231 (1 HSPs)
scaffold0231 (201-298)||(21792-21889)
[»] scaffold0485 (1 HSPs)
scaffold0485 (109-179)||(11055-11125)
[»] scaffold0091 (1 HSPs)
scaffold0091 (274-310)||(55097-55133)


Alignment Details
Target: scaffold1879 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: scaffold1879
Description:

Target: scaffold1879; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 61 - 274
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  61 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 160  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  161 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgctaatcctttgtacctcattttgcatccatgcccatctttca 260  T
Q  297 ttgtgtttttcatg 310  Q
    ||||||||||||||    
T  261 ttgtgtttttcatg 274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 97 - 310
Target Start/End: Complemental strand, 18010921 - 18010708
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  18010921 ctcacatttttcattgaggtccatagggaggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttgttcggatatgcggttgcc 18010822  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  18010821 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacctcattttgcatccatgcccatctttca 18010722  T
Q  297 ttgtgtttttcatg 310  Q
    ||||| ||||||||    
T  18010721 ttgtggttttcatg 18010708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 24856384 - 24856586
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24856384 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 24856482  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    ||| |||||||| |||||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  24856483 ccgaaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 24856582  T
Q  297 ttgt 300  Q
    ||||    
T  24856583 ttgt 24856586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 21561595 - 21561790
Alignment:
Q  103 tttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtag 202  Q
    |||| ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21561595 ttttccattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccttag 21561694  T
Q  203 gacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    |||||| || ||||  || || ||||| ||||||||||| |||||||||||||||||||| |  || ||  | |||||||||||||||||| ||||    
T  21561695 gacatcattccttagtcctgacaattcaacaccttgcctttgttgctcggtgcttatcctctcgacctcgatatgcatccatgcccatcttgcatt 21561790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 18447282 - 18447082
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||||||| |||||||||  | |||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  18447282 ctcacatttttcattaaggtccataaaggggaccttggaggtggaagtgttgcatcatgttccgaagcatttggttattctcttcggatatg-ggttgcc 18447184  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||  ||| ||||  |  || |||||||| ||||||||||| ||||||||||||||||||||||  || ||  |||| ||||||| ||||||||||    
T  18447183 ccttagggaatcatttcggagccctgataattcaacaccttgcctttgttgctcggtgcttatcctttcaacctcggtttgtatccatgtccatctttca 18447084  T
Q  297 tt 298  Q
    ||    
T  18447083 tt 18447082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 103 - 290
Target Start/End: Complemental strand, 11218678 - 11218491
Alignment:
Q  103 tttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtag 202  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||    
T  11218678 tttttcattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccacttag 11218579  T
Q  203 gacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccat 290  Q
    |||||| || ||||  || || ||||| ||||||| | |  ||| || |||||||||||| |  || ||| | |||||||||||||||    
T  11218578 gacatcattccttagtccagacaattcaacaccttacattagttactaggtgcttatcctctcgacctcagtatgcatccatgcccat 11218491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 97 - 264
Target Start/End: Original strand, 22166692 - 22166861
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22166692 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 22166791  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | ||||||||| |||||  |     | ||| ||||||||||| ||||||||||||||||| ||||    
T  22166792 cccctttggacatcgtgtcttatgctcatgagttcaacaccttgcctttgttgctcggtgcttattcttt 22166861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 107 - 298
Target Start/End: Complemental strand, 25966709 - 25966518
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| || |||||||||||||| |  || | |||||||||| ||||||||||||||||||||||||  ||||||||||| | || ||||    
T  25966709 tcattgaggtccataaggaggaccttggaggtgaatttgctccatcatgttctgaagcatttggttattttcttcggtcatgcggttgcctcttatgaca 25966610  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    || |||||||  || |||||||| |||||||| || |||||||||||||||||||| |  || ||| ||||||||||||| |||||||||||    
T  25966609 tcatttcttagcccagataattcaacaccttgtctttgttgctcggtgcttatcctctcaacttcagtttgcatccatgctcatctttcatt 25966518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 264
Target Start/End: Original strand, 20017377 - 20017546
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20017377 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcagttg 20017476  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | ||||||||| |||||  |     | ||| ||||||||||| ||||||||||||||||| ||||    
T  20017477 cccctttggacatcgtgtcttatgctcatgagttcaacaccttgcctttgttgctcggtgcttattcttt 20017546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 107 - 208
Target Start/End: Original strand, 22768279 - 22768380
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||    
T  22768279 tcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcccctttggaca 22768378  T
Q  207 tc 208  Q
    ||    
T  22768379 tc 22768380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 107 - 198
Target Start/End: Complemental strand, 20169298 - 20169207
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcccc 198  Q
    |||||| |||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20169298 tcattggggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcccc 20169207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 262
Target Start/End: Original strand, 30672896 - 30673050
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||| ||||| || ||||||||||||||||| || |||||||||||||||| |||||| |||||  ||||||||||| ||||||| | |||||||    
T  30672896 tcattgaggcccataaggaggaccttggaggtggaaatg-tgcatcatgttccgaaacatttgattattcacttcggatatgtggttgcctcttaggaca 30672994  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || |||| ||  ||||||||||| ||||||| ||| ||||||||| | ||||||||    
T  30672995 tcatttcctagcccggataattcaacacctttcctttgttgctcgattcttatcct 30673050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 23518889 - 23519069
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    ||||||||||||| ||||||||||| ||||| |  || |||||||||||||| || ||||  |||||||||||||  ||| | |||| || | |||||||    
T  23518889 attgaggtccataaggtggaccttgtaggtgaagttgttgcatcatgttccggagaattttattattttcttcggtcatgtgattgctcctttggacatc 23518988  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
     |||||||  | ||| | ||| |||||||| || |||| |||||||||||| ||||| || ||  ||||||||||||||||    
T  23518989 atttcttagcctggagatttcaacaccttgtctttgttactcggtgcttattctttgaacttcggtttgcatccatgccca 23519069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 19586808 - 19586905
Alignment:
Q  192 ttgccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    ||||||| |||||||||||||||||  ||||  | ||| |||||||| || ||||| ||||||| ||| ||||| || ||  ||||||||||||||||    
T  19586808 ttgccccttaggacatcgtttcttagcccggccatttcaacaccttgtctttgttgttcggtgcatattctttgaacttcggtttgcatccatgccca 19586905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 29685505 - 29685447
Alignment:
Q  231 acaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    |||||||| || |||||||||||| |||||||||| || ||  ||||||||||||||||    
T  29685505 acaccttgtctttgttgctcggtgattatcctttgaacttcggtttgcatccatgccca 29685447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 97 - 310
Target Start/End: Original strand, 25145930 - 25146143
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25145930 ctcacatttttcattgaggtcgatagggaggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 25146029  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    ||||||||| ||||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||    
T  25146030 ccgtaggacttcgtttcttaaactggataattcgacaacttgcctctgttgctcggtgctaatcctttgtacctcattttgcatccatgcccatctttca 25146129  T
Q  297 ttgtgtttttcatg 310  Q
    ||||| ||||||||    
T  25146130 ttgtggttttcatg 25146143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 22045800 - 22046002
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22045800 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 22045898  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  22045899 ccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 22045998  T
Q  297 ttgt 300  Q
    ||||    
T  22045999 ttgt 22046002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 25356586 - 25356384
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25356586 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 25356488  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  25356487 ccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 25356388  T
Q  297 ttgt 300  Q
    ||||    
T  25356387 ttgt 25356384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 27626668 - 27626466
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27626668 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 27626570  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    ||| |||||||| |||||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  27626569 ccgaaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 27626470  T
Q  297 ttgt 300  Q
    ||||    
T  27626469 ttgt 27626466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 12754 - 12956
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  12754 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttctttggatatgcggttgcc 12852  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| ||| |||  ||||||||||| |||||||| || ||||||||||||||||| |||||||| ||  |||||||||||||||||||||||    
T  12853 ccttaggacatcatttattagcccggataattcaacaccttgtctttgttgctcggtgcttattctttgtacctcggtttgcatccatgcccatctttca 12952  T
Q  297 ttgt 300  Q
    ||||    
T  12953 ttgt 12956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 24170409 - 24170206
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||||| ||||| ||||||| ||  ||||| |||||||||||||||||||| |||||  ||||||||||| |||||||    
T  24170409 ctcacatttttcattgaggtccatagggaggaccgtggaggttgagatggtgtatcatgttccgaagcatttgattattcacttcggatatgtggttgcc 24170310  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    ||||||||||||||||||||  ||||||| ||||||||||||||| |||||||| ||||| ||||||||||| ||| |||||||||||| ||||||| ||    
T  24170309 ccgtaggacatcgtttcttagcccggatagttcgacaccttgcctttgttgctcagtgctaatcctttgtacctcagtttgcatccatgaccatcttcca 24170210  T
Q  297 ttgt 300  Q
    ||||    
T  24170209 ttgt 24170206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 24821241 - 24821407
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggtta-ttttcttcggatatgcggttgc 195  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24821241 ctcacatttttcattgaggtccatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttatttttcttcggatatgcggttgc 24821340  T
Q  196 cccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    ||| ||||||||| || ||||  || |||||||| ||||||||||| || |||||||||||||||||    
T  24821341 cccttaggacatcattccttagtcccgataattcaacaccttgcctttgatgctcggtgcttatcct 24821407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 26192761 - 26192962
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  26192761 ctcacatttttcattgaggtccatagaggggaccctggaggtggaagtgttgcatcatgttccgaagcatttggttattctctttggatatgtggttgcc 26192860  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| ||||  |  ||  ||||||| ||||||||||| |||| |||||||||||||||||  || ||  |||||||||||| ||||||||||    
T  26192861 ccttaggacatcatttcggagccctcataattcaacaccttgcctttgttactcggtgcttatcctttcaacctcggtttgcatccatgtccatctttca 26192960  T
Q  297 tt 298  Q
    ||    
T  26192961 tt 26192962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 17867188 - 17867390
Alignment:
Q  97 ctcacatttttcattgaggtcc-atagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgc 195  Q
    |||||||||||||||||| ||  |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  17867188 ctcacatttttcattgagttcttatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcgggtatgcggttgc 17867287  T
Q  196 cccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttc 295  Q
    ||| ||||||||| || ||||  || |||||||| |||||| ||||  |||||||||||||||||||||  || ||  || ||||||||| |||||||||    
T  17867288 cccttaggacatcattccttagtcccgataattcaacacctagccttagttgctcggtgcttatcctttcaacctcggttcgcatccatgtccatctttc 17867387  T
Q  296 att 298  Q
    |||    
T  17867388 att 17867390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 25368760 - 25368961
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||| |||||||||||||||| || ||||||||||||| ||  || |||||||||||| |||||||||| ||||| |||||||||||||||||| |    
T  25368760 ctcacattattcattgaggtccataaggaggaccttggaggttgagatgttgcatcatgttctgaagcatttgattattctcttcggatatgcggttggc 25368859  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| ||||||   ||| ||| ||| ||| ||||||| |||||||||||||||||||| || || ||| |||||||||||||||||||||||    
T  25368860 ccttaggacatcatttctttgcccgaatatttcaacatcttgcctttgttgctcggtgcttatcctctgaacctcagtttgcatccatgcccatctttca 25368959  T
Q  297 tt 298  Q
    ||    
T  25368960 tt 25368961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 107 - 264
Target Start/End: Original strand, 27769950 - 27770107
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    |||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||    
T  27769950 tcattggggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttgttttcttcggatatgcggttgccccgttggaca 27770049  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    || || ||||  ||   |||||| ||||||||||| ||||||||||||||||||||||    
T  27770050 tcattccttattcccattaattcaacaccttgcctttgttgctcggtgcttatccttt 27770107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 292
Target Start/End: Complemental strand, 116581 - 116384
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  116581 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaaacatttggttattttcttcggatatgcggttg 116482  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatct 292  Q
    |||| | ||||||| || ||||  ||   |||||| ||||||||||| ||||||||| |||||||||| |  || ||  | |||||||||||||||||    
T  116481 cccctttggacatcattccttagtcccattaattcaacaccttgcctttgttgctcgatgcttatcctctcgacctcggtatgcatccatgcccatct 116384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 16774734 - 16774565
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  16774734 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaatcatttggttattttcttcggatatgcggttg 16774635  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | ||||||||| |||||  |     | ||| ||||||||||| ||||||||||||||||| ||||    
T  16774634 cccctttggacatcgtgtcttatgctcatgagttcaacaccttgcctttgttgctcggtgcttattcttt 16774565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 264
Target Start/End: Original strand, 23160512 - 23160681
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  23160512 ctcacatttttatcattggggtccatatggaggaccttggaggtgaaagtggtgcatcatgttctgaagcatttggttgttttcttcggatatgcggttg 23160611  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | |||||||||| ||||  ||   || ||| ||||||||||| ||||||||||| ||||| ||||    
T  23160612 cccctttggacatcgttccttatgcccattagttcaacaccttgcctttgttgctcggtacttattcttt 23160681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 264
Target Start/End: Original strand, 23571769 - 23571938
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||||||| ||||||||||||| |||||||||||||||||||||    
T  23571769 ctcacatttttatcattggggtccatatggaggaccttggaggtgaaagtggtgcatcatgttctgaagcatttggttgttttcttcggatatgcggttg 23571868  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | |||||||||| ||||  ||   || ||| ||||||||||| ||||||||||| ||||| ||||    
T  23571869 cccctttggacatcgttccttatgcccattagttcaacaccttgcctttgttgctcggtacttattcttt 23571938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 24796432 - 24796545
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24796432 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 24796531  T
Q  195 ccccgtaggacatc 208  Q
    |||| | |||||||    
T  24796532 cccctttggacatc 24796545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 27630584 - 27630415
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  27630584 ctcacatttttatcattggggtccatatggaggaccttggaggtgaaagtggtgcatcattttccgaagcatttggttgttttcttcggatatgcggttg 27630485  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | |||||| ||| ||||  ||   || ||| ||||||||||| ||||||||||||||||| ||||    
T  27630484 cccctttggacattgttccttatgcccattagttcaacaccttgcctttgttgctcggtgcttattcttt 27630415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 107 - 254
Target Start/End: Original strand, 25372134 - 25372281
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| ||  ||||||||||||||||||| ||||||||| ||||||||||||| ||||| |||||||| |||||||| ||||  ||||||    
T  25372134 tcattgaggtccataaggatgaccttggaggtggaagtgttgcatcatgctccgaagcatttgattattctcttcggagatgcggtttcccctaaggaca 25372233  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtg 254  Q
    || |||| ||  ||||||||||| | ||||||||| ||||||||||||    
T  25372234 tcatttcgtagcccggataattcaataccttgcctttgttgctcggtg 25372281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 208
Target Start/End: Original strand, 25339253 - 25339352
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    ||||||||||||| || |||||||| || || | ||| |||||||||||||  ||||||||||| ||||| || |  ||||| ||||||| | |||||||    
T  25339253 attgaggtccataagggggaccttgcagatgaaggtgttgcatcatgttccagagcatttggttgttttcctcagtcatgcgattgcccctttggacatc 25339352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 97 - 301
Target Start/End: Original strand, 38879 - 39083
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||  || ||||||||||||||||||||||| ||||| ||||||||||||||||| ||    
T  38879 ctcacatttttcattgaggtccatagggaggaccttggaggttgagatgttgcatcatgttccgaagcatttgattattctcttcggatatgcggttacc 38978  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||| ||| |||||||||||||||||||||||    
T  38979 ccgtaggacatcgtttcttaaaccggatagttcgacaccttgcctttgttgctcggtgctaatcctttgtacctcagtttgcatccatgcccatctttca 39078  T
Q  297 ttgtg 301  Q
    |||||    
T  39079 ttgtg 39083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 148; Significance: 4e-78; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 22100765 - 22100967
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22100765 ctcacattttt-attgaggtccatagggaggaccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 22100863  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  22100864 ccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 22100963  T
Q  297 ttgt 300  Q
    ||||    
T  22100964 ttgt 22100967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 21381167 - 21380965
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21381167 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 21381069  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
     ||||||||||| |||||||  || |||||||||||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  21381068 tcgtaggacatcatttcttagcccagataattcgacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 21380969  T
Q  297 ttgt 300  Q
    ||||    
T  21380968 ttgt 21380965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 22098297 - 22098095
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22098297 ctcacattttt-attgaggtccatagggaggaccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 22098199  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||| ||||||||||||||||| ||  |||||||||||||||||||||||    
T  22098198 ccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcagtgcttatcctttgtacctcgatttgcatccatgcccatctttca 22098099  T
Q  297 ttgt 300  Q
    ||||    
T  22098098 ttgt 22098095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 16419740 - 16419942
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16419740 ctcacattttt-attgaggtccatagggaggaccttggaggtggaagtgttgcatcatgttccgaagcatttggttattctcttcggatatgcggttgcc 16419838  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
     | ||||||||| || ||||  ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  16419839 tcttaggacatcattccttagcccggataattcaacaccttgcctttgttgttcggtgcttatcctttgtacctcagtttgcatccatgcccatctttca 16419938  T
Q  297 ttgt 300  Q
    ||||    
T  16419939 ttgt 16419942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 22034670 - 22034872
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| ||| ||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22034670 ctcacattttt-attgaggtccatagggaggaacttggaggttgaagtgttgcatcatgttccgaagcatttgattattttcttcggatatgcggttgcc 22034768  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| ||||||||||||||||| |||||||| ||  |||||||||||||| ||||||||    
T  22034769 ccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttattctttgtacctcggtttgcatccatgccaatctttca 22034868  T
Q  297 ttgt 300  Q
    ||||    
T  22034869 ttgt 22034872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 97 - 299
Target Start/End: Complemental strand, 21955153 - 21954952
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21955153 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttcctaagcatttggttattttcttcggatatgcggttgcc 21955055  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| |||||||| || |||||||||||||||||||||||||| ||  |||| ||||||||||||||||||    
T  21955054 ccttaggacatcatttcttagcccggataattcaacaccttgtctttgttgctcggtgcttatcctttgtacctcggtttggatccatgcccatctttca 21954955  T
Q  297 ttg 299  Q
    |||    
T  21954954 ttg 21954952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 8323991 - 8324193
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  8323991 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaagtgttgcatcatgttccgaagcattcggttattttcttcggatatgcggttgcc 8324089  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
     ||||||||||| |||||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  8324090 tcgtaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 8324189  T
Q  297 ttgt 300  Q
    ||||    
T  8324190 ttgt 8324193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 8313542 - 8313340
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| || || |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  8313542 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaaatgttgcatcatgttccgaagcatgtggttattttcttcggatatgcggttgcc 8313444  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    ||| |||||||| |||||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  8313443 ccgaaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 8313344  T
Q  297 ttgt 300  Q
    ||||    
T  8313343 ttgt 8313340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 11348086 - 11348288
Alignment:
Q  97 ctcacatttttcattgaggtcc-atagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgc 195  Q
    |||||||||| ||||||| ||  |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11348086 ctcacattttgcattgagttcttatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgc 11348185  T
Q  196 cccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttc 295  Q
    ||| ||||||||| || ||||  || ||||||| ||||||||||||  |||||||||||||||||||||  || ||  |||||||||||| |||||||||    
T  11348186 cccttaggacatcattccttagtcccgataatttgacaccttgccttagttgctcggtgcttatcctttcaacctcggtttgcatccatgtccatctttc 11348285  T
Q  296 att 298  Q
    |||    
T  11348286 att 11348288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 21099952 - 21100155
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||| |||||||||||   |||| || ||||||||||| | ||| |||||||| |||||||||||||| |||||||||||||  |||||||||||    
T  21099952 ctcacatttgtcattgaggtctgcagggagggccttggaggtgtaggtgttgcatcatattccgaagcatttgattattttcttcggtgatgcggttgcc 21100051  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||||| ||||||||||||| |||||||||||| ||||||| | ||| ||||| || ||||||||||||||||||    
T  21100052 ccgtaggacatcatttcttagtccggataatccgacaccttgcctttgttgctcggtgtttatcctctctacctcattgtgtatccatgcccatctttca 21100151  T
Q  297 ttgt 300  Q
    ||||    
T  21100152 ttgt 21100155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 107 - 298
Target Start/End: Complemental strand, 22290089 - 22289899
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| || |||||||||||||||||||| |||| |||||||||||||||||| ||||  |||||||||||||||||||||| |||||||    
T  22290089 tcattgaggtccataagggggaccttggaggtggaagtgttgcaccatgttccgaagcatttgattatgctcttcggatatgcggttgcccc-taggaca 22289991  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    || |||||||  ||||||||||| ||| ||||||| |||||||||||||||||||| |  || ||| ||||||| |||||||||||||||||    
T  22289990 tcatttcttagcccggataattcaacatcttgcctttgttgctcggtgcttatcctctcaacctcagtttgcattcatgcccatctttcatt 22289899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 21942593 - 21942794
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| | ||  ||||||||||||||    
T  21942593 ctcacatttttcattgaggtccatagaggggaccttggaggtggaagtgttgcatcatgttccgaagcatttggttattctatttagatatgcggttgcc 21942692  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| ||||  |  ||  ||||||| ||||||||||| |||| |||||||||||||||||  || ||  |||||||||||| ||||||||||    
T  21942693 ccttaggacatcatttcggagccctcataattcaacaccttgcctttgttactcggtgcttatcctttcaacctcggtttgcatccatgtccatctttca 21942792  T
Q  297 tt 298  Q
    ||    
T  21942793 tt 21942794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 19766572 - 19766371
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||| ||||||| |||| ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| || ||    
T  19766572 ctcacatttttcattgaggttcatagggaggactttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcgatttcc 19766473  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |  ||||||||| || ||||  || || ||||| ||||||||||| | |||||||||||||||| | |  || ||  |||||||||||||||||||| ||    
T  19766472 ctttaggacatcattccttagtcccgacaattcaacaccttgccttttttgctcggtgcttatcttctcgacctctgtttgcatccatgcccatcttgca 19766373  T
Q  297 tt 298  Q
    ||    
T  19766372 tt 19766371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 22369032 - 22368831
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||||| | |||||||||| | ||||| |||||||||||||| ||||||||||||||| ||||||||||||| |||| |||||||||||||||    
T  22369032 ctcacatttttcactaaggtccatagaggggaccctggaggtggaagtgttgcatcatgttccgatgcatttggttattctctttggatatgcggttgcc 22368933  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| ||||  |  ||  ||||||| ||||||||||| |||| |||||||| ||||||||  || ||  |||||||||||| ||||||||||    
T  22368932 ccttaggacatcatttcggagccctcataattcaacaccttgcctttgttactcggtgcatatcctttcaacctcggtttgcatccatgtccatctttca 22368833  T
Q  297 tt 298  Q
    ||    
T  22368832 tt 22368831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 21826462 - 21826293
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||    
T  21826462 ctcacatttttatcattggggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttgttttcttcggatatgtggttg 21826363  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | |||||||||| ||||  ||   |||||| ||||||||||| |||||||||||| |||||||||    
T  21826362 cccctttggacatcgttccttattcccattaattcaacaccttgcctttgttgctcggtggttatccttt 21826293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 29333685 - 29333484
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||| ||| || |||||| |||||||||||||| || ||||||| |||||||||||||||||||||||||||||||||||||||||| ||    
T  29333685 ctcacatttttcatcgagttctatagggaggaccttggaggtgaaaatggtgcaccatgttccgaagcatttggttattttcttcggatatgcggtttcc 29333586  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| || ||||  || || ||||| |||| |||| |  ||||||||||||||||||| |  || ||  | |||||||||||||||||| ||    
T  29333585 ccttaggacatcattccttagtcccgacaattcaacactttgcgttagttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttgca 29333486  T
Q  297 tt 298  Q
    ||    
T  29333485 tt 29333484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 107 - 256
Target Start/End: Complemental strand, 22832107 - 22831958
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||||| ||||| ||||| ||||| |||||| | ||| ||||||||| |||||||    
T  22832107 tcattgaggtccataaggaggaccttggaggtggaagtgttgcatcatgtttcgaagtatttgattattctcttcgaagatgtggttgccccttaggaca 22832008  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgct 256  Q
    || |||||||  | || |||||| ||| ||||||| ||||||||||||||    
T  22832007 tcatttcttagcctgggtaattcaacatcttgcctttgttgctcggtgct 22831958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 109 - 216
Target Start/End: Original strand, 21854914 - 21855021
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    ||||| ||||||| ||| ||||||||||||| | ||| ||||||||||  |||| |||||| || |||| ||||  |||  |  |||||| |||||||||    
T  21854914 attgaagtccataaggtagaccttggaggtgaaggtgttgcatcatgtatcgaaacatttgattgttttattcgtttatttgagtgccccttaggacatc 21855013  T
Q  209 gtttctta 216  Q
    ||||||||    
T  21855014 gtttctta 21855021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 8716938 - 8716736
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8716938 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 8716840  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  8716839 ccgtaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 8716740  T
Q  297 ttgt 300  Q
    ||||    
T  8716739 ttgt 8716736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 14550170 - 14549968
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14550170 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 14550072  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||  |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  14550071 ccgtaggacattatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 14549972  T
Q  297 ttgt 300  Q
    ||||    
T  14549971 ttgt 14549968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 18286699 - 18286497
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18286699 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccaaagcatttggttattttcttcggatatgcggttgcc 18286601  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  18286600 ccgtaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 18286501  T
Q  297 ttgt 300  Q
    ||||    
T  18286500 ttgt 18286497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 48802998 - 48803199
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||| ||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||  |||||||||||    
T  48802998 ctcacattgttcattgaggtccatagggaggaccttggaggtggaagtgttgcatcatgttccgaagcatttgattattctcttcggtgatgcggttgcc 48803097  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||| ||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||| ||    
T  48803098 ccgtagaacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcagtttgcatccatgcccatcttcca 48803197  T
Q  297 tt 298  Q
    ||    
T  48803198 tt 48803199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 13657007 - 13656805
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13657007 ctcacattttt-attgaggtccatagggaggaccttggaggtggaagtgttccatcatgttccgaagcatttggttattctcttcggatatgcggttgcc 13656909  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
     | ||||||||| || ||||  ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  13656908 tcttaggacatcattccttagcccggataattcaacaccttgcctttgttgttcggtgcttatcctttgtacctcagtttgcatccatgcccatctttca 13656809  T
Q  297 ttgt 300  Q
    ||||    
T  13656808 ttgt 13656805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 16466755 - 16466957
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || ||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||    
T  16466755 ctcacattttt-attgaggtccatagggagggccatggaggttgaagtgttgcatcatgtgccgaagcatttggttattttcttcggatatgcggttgcc 16466853  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||||||||    
T  16466854 ccgtaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctctgtacctcggtttgcatccatgcccatctttca 16466953  T
Q  297 ttgt 300  Q
    ||||    
T  16466954 ttgt 16466957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 824702 - 824501
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  824702 ctcacatttttcattgagttctatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggtttcc 824603  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| || ||||  || |||||||| |||||||||||  |||||||||||||||||||||  || ||| |||||||||||| ||||||||||    
T  824602 ccttaggacatcattccttagtcccgataattcaacaccttgccttagttgctcggtgcttatcctttcaacctcagtttgcatccatgtccatctttca 824503  T
Q  297 tt 298  Q
    ||    
T  824502 tt 824501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 106 - 298
Target Start/End: Complemental strand, 20107342 - 20107150
Alignment:
Q  106 ttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggac 205  Q
    |||||||||||||||| || ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20107342 ttcattgaggtccataaggaggaccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccttaggac 20107243  T
Q  206 atcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    ||| |||| ||  |||||||| || ||||||||||| |||||| ||||||||||||| |  || ||  | |||||||||||||||||||||||    
T  20107242 atcatttcgtagtccggataactcaacaccttgcctttgttgcacggtgcttatcctctcaacctctatgtgcatccatgcccatctttcatt 20107150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 97 - 296
Target Start/End: Original strand, 15917908 - 15918107
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  15917908 ctcacatttttcattgagttctatagggaggaccgtggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcgaatatgcggttgcc 15918007  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| || ||||  || |||||||| |||||||||||  |||||||||||||||||||||  || ||| |||||||| ||| ||||||||||    
T  15918008 ccttaggacatcattccttagtcccgataattcaacaccttgccttagttgctcggtgcttatcctttcaacctcagtttgcatcgatgtccatctttca 15918107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 15064836 - 15064639
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||| |||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  15064836 ctcacatttttcattgagttctatagggaggaccttggaggtgaaaatggtgcatcatgttccaaagcatttggttattttcttcggatatgcggttgcc 15064737  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    || ||||||||| || ||||  || |||||||| ||||||||||   |||||||||||||||||||||  || ||  |||||||||||| ||||||||    
T  15064736 ccttaggacatcattccttagtcccgataattcaacaccttgccgtagttgctcggtgcttatcctttcaacctcggtttgcatccatgtccatcttt 15064639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 13672931 - 13672765
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||  || || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13672931 ctcacattttt-attgaggtccataggtagggccctgaaggtgcaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 13672833  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||||||||||| |||||||  || |||||||| ||||||||||| ||||||||||||||||| ||||    
T  13672832 ccgtaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttattcttt 13672765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 16531121 - 16530918
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16531121 ctcacatttttgtcattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttcggaagcatttggttattttcttcggatatgcggttg 16531022  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||||||||||||| || ||||  ||    ||||| | ||||||||| | |||||||||||||||||| |  || ||  | ||||||||||||||||||     
T  16531021 ccccgtaggacatcattccttagtcccatcaattcaataccttgcctttcttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttg 16530922  T
Q  295 catt 298  Q
    ||||    
T  16530921 catt 16530918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 16634541 - 16634744
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16634541 ctcacatttttgtcattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttcggaagcatttggttattttcttcggatatgcggttg 16634640  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||||||||||||| || ||||  ||    ||||| | ||||||||| | |||||||||||||||||| |  || ||  | ||||||||||||||||||     
T  16634641 ccccgtaggacatcattccttagtcccatcaattcaataccttgcctttcttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttg 16634740  T
Q  295 catt 298  Q
    ||||    
T  16634741 catt 16634744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 16150642 - 16150807
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16150642 ctcacatttttcattgagttctatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 16150741  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||  || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  16150742 ccttaggacataattccttagtcccgacaattcaacaccttgccttagttgcttggtgcttatcct 16150807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 107 - 298
Target Start/End: Original strand, 16760940 - 16761131
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||    
T  16760940 tcattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttccgaagtatttggttattttcttcggatatgcggttgccccataggaca 16761039  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    |  || ||||  |   | ||||| |||||||||||  |||||| |||||||||||| |  || ||  | |||||||||||||||||| ||||    
T  16761040 taattccttagtcacaacaattcaacaccttgccttagttgctaggtgcttatcctctcgacctcggtatgcatccatgcccatcttgcatt 16761131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 216
Target Start/End: Original strand, 18594406 - 18594527
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18594406 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 18594505  T
Q  195 ccccgtaggacatcgtttctta 216  Q
    | || | ||||||||| |||||    
T  18594506 ctcctttggacatcgtgtctta 18594527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 18617278 - 18617157
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18617278 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 18617179  T
Q  195 ccccgtaggacatcgtttctta 216  Q
    | || | ||||||||| |||||    
T  18617178 ctcctttggacatcgtgtctta 18617157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 8783239 - 8783419
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    ||||||||||||| ||||||||||||||||| | |||  ||||||||||    |||||||| |||||||||||   ||| |  ||||||| |||||||||    
T  8783239 attgaggtccataaggtggaccttggaggtgaaggtgtagcatcatgttttagagcatttgattattttcttcatttattcaattgccccttaggacatc 8783338  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    ||||||||  |||   | ||| |||| ||| || ||||||||||||| ||| ||||| || ||  |||||||||| |||||    
T  8783339 gtttcttagcccgaccatttcaacactttgtctttgttgctcggtgcatattctttgaacttcggtttgcatccacgccca 8783419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 4311800 - 4311620
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    |||||||| |||  ||||||||||||||||| | ||| ||||||||||| || |||||||| || |||| |||   ||| || ||||||| |||||||||    
T  4311800 attgaggttcattaggtggaccttggaggtgaaggtgttgcatcatgtttcggagcatttgattgttttattcatttattcgattgccccttaggacatc 4311701  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    ||||||||  |||   | ||| ||||||||  | ||||||||||||| ||| | ||| || ||  ||| ||||||||||||    
T  4311700 gtttcttatcccgaccatttcaacaccttgtttttgttgctcggtgcatattccttgaacttcggtttacatccatgccca 4311620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 289
Target Start/End: Complemental strand, 5396121 - 5396024
Alignment:
Q  192 ttgccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    ||||||| |||||||||||||||||  |||   | ||| |||||||| || ||||||||||||| | | ||||| || ||  ||||||||||||||||    
T  5396121 ttgccccttaggacatcgtttcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgccca 5396024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 148; Significance: 4e-78; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 15734608 - 15734406
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15734608 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 15734510  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  15734509 ccgtaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 15734410  T
Q  297 ttgt 300  Q
    ||||    
T  15734409 ttgt 15734406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 22318624 - 22318826
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||    
T  22318624 ctcacattttt-attgaggtccatagggaggaccttggaggtggaagtgttgcatcatgtgccgaagcatttggttattctcttcggatatgcggttgcc 22318722  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || |||||| || |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  22318723 ccttaggacgtcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcagtttgcatccatgcccatctttca 22318822  T
Q  297 ttgt 300  Q
    ||||    
T  22318823 ttgt 22318826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 109 - 300
Target Start/End: Complemental strand, 23747114 - 23746923
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23747114 attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 23747015  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcattgt 300  Q
     |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  23747014 atttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttcattgt 23746923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 25007923 - 25008125
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||    
T  25007923 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaaacatttggttattttcttcggatatgcggttgcc 25008021  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||| ||||||||||    
T  25008022 ccgtaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgtccatctttca 25008121  T
Q  297 ttgt 300  Q
    ||||    
T  25008122 ttgt 25008125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 20621237 - 20621035
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621237 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 20621139  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  20621138 ccgtaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 20621039  T
Q  297 ttgt 300  Q
    ||||    
T  20621038 ttgt 20621035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 25117283 - 25117486
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25117283 ctcacatttttatcattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 25117382  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||||| ||||||| || ||||  ||   |||||| ||||||||||| |||| |||||||||||||||    || ||| | ||||||||||||||||||     
T  25117383 ccccgttggacatcattccttagtcccattaattcaacaccttgcctttgttactcggtgcttatcctcccgacctcaatatgcatccatgcccatcttg 25117482  T
Q  295 catt 298  Q
    ||||    
T  25117483 catt 25117486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 25176374 - 25176577
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25176374 ctcacatttttatcattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 25176473  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||||| ||||||| || ||||  ||   |||||| ||||||||||| |||| |||||||||||||||    || ||| | ||||||||||||||||||     
T  25176474 ccccgttggacatcattccttagtcccattaattcaacaccttgcctttgttactcggtgcttatcctcccgacctcaatatgcatccatgcccatcttg 25176573  T
Q  295 catt 298  Q
    ||||    
T  25176574 catt 25176577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 30760779 - 30760982
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30760779 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggtta 30760878  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||| | ||||||| |||||||  ||   |||||| ||||||||||| |||||||||||||||||||| |  || ||  | ||||||||||||||||||     
T  30760879 ccccttcggacatcatttcttagtcccattaattcaacaccttgcctttgttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttg 30760978  T
Q  295 catt 298  Q
    ||||    
T  30760979 catt 30760982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 107 - 298
Target Start/End: Original strand, 20439313 - 20439504
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| || ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  20439313 tcattgaggtccatatggaggaccttcgaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgttggaca 20439412  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    || || ||||  ||   |||||| ||||||||||| |||||||||||||||||||| |  || ||  | |||||||||||||||||| ||||    
T  20439413 tcattccttattccaattaattcaacaccttgcctttgttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttgcatt 20439504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 262
Target Start/End: Complemental strand, 18071986 - 18071821
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||  |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  18071986 ctcacatttttcattgagttctataggtaggaccttggaggtgaaaatggtgcatcatgttccgaagtatttggttattttcttcggatatgcggttgcc 18071887  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||  || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  18071886 ccttaggacataattccttagtcccgacaattcaacaccttgccttagttgcttggtgcttatcct 18071821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 20596979 - 20597144
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||| ||||||||| || |||||  |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20596979 ctcacattgttcattgagttctataggtaggaccttggaggtgaaaatggtgcatcatgttccgaagtatttggttattttcttcggatatgcggttgcc 20597078  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||  || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  20597079 ccttaggacataattccttagtcccgacaattcaacaccttgccttagttgcttggtgcttatcct 20597144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 20603276 - 20603441
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||| ||||||||| || |||||  |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20603276 ctcacattgttcattgagttctataggtaggaccttggaggtgaaaatggtgcatcatgttccgaagtatttggttattttcttcggatatgcggttgcc 20603375  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||  || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  20603376 ccttaggacataattccttagtcccgacaattcaacaccttgccttagttgcttggtgcttatcct 20603441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 104 - 298
Target Start/End: Complemental strand, 22947499 - 22947305
Alignment:
Q  104 ttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtagg 203  Q
    |||||||||||||||||| |  ||||||||||| | ||  || ||||||||||||  ||||||||  ||||| |||||||||||||||||||||| ||||    
T  22947499 ttttcattgaggtccataagaaggaccttggagattgagatgttgcatcatgttctaaagcattttattattctcttcggatatgcggttgccccttagg 22947400  T
Q  204 acatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    ||||| |||||||  ||||||| ||| ||||||||||| ||||||| |||||||||||| |  || ||  |||||||||||| ||||||||||||    
T  22947399 acatcatttcttaccccggatatttcaacaccttgcctttgttgcttggtgcttatcctctaaacctccgtttgcatccatggccatctttcatt 22947305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 20609595 - 20609760
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||| ||||||||| || |||||  |||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  20609595 ctcacattgttcattgagttctataggtaggaccttggaggtgaaaatggtgcatcatgttccgaagtatttggttattttcttcggatatgcggttgcc 20609694  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||  || ||||  || || ||||| |||||||| ||  |||||| ||||||||||||    
T  20609695 ccttaggacataattccttagtcccgacaattcaacaccttgtcttagttgcttggtgcttatcct 20609760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 20791922 - 20792087
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||  |||||||||||||| |  ||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  20791922 ctcacatttttcattgagttctataggtaggaccttggaggtgaagatggtgcatcatgttccgaagcatttggttatttccttcggatatgcggttgcc 20792021  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||  || ||||  || || ||||| |||||||||||  ||| || ||||||||||||    
T  20792022 ccttaggacataattccttagtcccgacaattcaacaccttgccttagtttcttggtgcttatcct 20792087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 109 - 264
Target Start/End: Original strand, 24954328 - 24954483
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    ||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||    
T  24954328 attgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcagatatgcggttgcccctttggacatc 24954427  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
     | |||||  |     | ||| ||||||||||| ||||||||||||||||| ||||    
T  24954428 ctgtcttatgcttatgagttcaacaccttgcctttgttgctcggtgcttattcttt 24954483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 26846735 - 26846541
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||||||||||||| |||||| |||||||||||||| ||       ||||||||||||||||||| |||||||||||| ||||||||||| ||    
T  26846735 ctcacatttttcattgaggtctatagggaggaccttggaggtgaaa-------atcatgttccgaagcatttagttattttcttcagatatgcggtttcc 26846643  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |  ||||||||| || |||   || || ||||| ||||||||||| |||||||||||||||||||| |  || ||  | |||||||||||||||||| ||    
T  26846642 ctttaggacatcattccttggtcccgacaattcaacaccttgcctttgttgctcggtgcttatcctctcgacctcggtgtgcatccatgcccatcttgca 26846543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 21387358 - 21387268
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatat 187  Q
    ||||||||||||||||||||||||| || |||||||||||||||||||| | ||||||||||| ||||||||| ||||| |||||||||||    
T  21387358 ctcacatttttcattgaggtccataaggaggaccttggaggtggaagtgctccatcatgttccaaagcatttgattattctcttcggatat 21387268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 221 - 298
Target Start/End: Complemental strand, 21387258 - 21387181
Alignment:
Q  221 ggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    ||||||||| | ||||||||| ||||||||||||||||||||||  || ||| |||||||||||||||| ||||||||    
T  21387258 ggataattcaataccttgcctttgttgctcggtgcttatcctttcaacctcagtttgcatccatgcccacctttcatt 21387181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 289
Target Start/End: Original strand, 18487207 - 18487381
Alignment:
Q  115 gtccatagggtggaccttggaggtggaagtggtgcatcatgt-tccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatcgtttc 213  Q
    ||||||| ||||||||||||||||| | ||| |||||||||| || ||| |||||| || |||| |||   |||  | ||||||| ||||||||||||||    
T  18487207 gtccataaggtggaccttggaggtgaaggtgttgcatcatgtatcagaa-catttgattgttttattcatttatttgattgccccttaggacatcgtttc 18487305  T
Q  214 ttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    |||  |||   | ||| |||||||| || ||||||||||||| | | ||||| || ||  ||||||||||||||||    
T  18487306 ttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacatcggtttgcatccatgccca 18487381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 115 - 289
Target Start/End: Original strand, 22827903 - 22828077
Alignment:
Q  115 gtccatagggtggaccttggaggtggaagtggtgcatcatgt-tccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatcgtttc 213  Q
    ||||||| ||| ||||||||||||| | ||| |||||||||| || ||| |||||| ||||||| |||   |||  | ||||||| ||||||||||||||    
T  22827903 gtccataaggtagaccttggaggtgaaggtgttgcatcatgtatcagaa-catttgattattttattcatttatttgattgccccttaggacatcgtttc 22828001  T
Q  214 ttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    |||  |||   | ||| |||||||| || ||||||||||||| | | ||||| || ||  ||||||||||||||||    
T  22828002 ttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgccca 22828077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 148; Significance: 4e-78; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 7599430 - 7599228
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7599430 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 7599332  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  7599331 ccgtaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 7599232  T
Q  297 ttgt 300  Q
    ||||    
T  7599231 ttgt 7599228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 13137309 - 13137511
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||||||||||    
T  13137309 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttctttggatatgcggttgcc 13137407  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    | |||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||| ||||    
T  13137408 ctgtaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatcgttca 13137507  T
Q  297 ttgt 300  Q
    ||||    
T  13137508 ttgt 13137511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 13689741 - 13689539
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| | ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13689741 ctcacattttt-attgaggtccatagggaggaccttggaggtggaagtgttccatcatgttccgaagcatttggttattctcttcggatatgcggttgcc 13689643  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
     | ||||||||| || ||||  ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||||||    
T  13689642 tcttaggacatcattccttagcccggataattcaacaccttgcctttgttgttcggtgcttatcctttgtacctcagtttgcatccatgcccatctttca 13689543  T
Q  297 ttgt 300  Q
    ||||    
T  13689542 ttgt 13689539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 15630096 - 15630298
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  15630096 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggtttttttcttcggatatgcggttgcc 15630194  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| ||||||   | ||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  15630195 ccgtaggacatcatttctttgcctggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 15630294  T
Q  297 ttgt 300  Q
    ||||    
T  15630295 ttgt 15630298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 10146085 - 10145883
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10146085 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaaatgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 10145987  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||| ||||    
T  10145986 ccgtaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatcgttca 10145887  T
Q  297 ttgt 300  Q
    ||||    
T  10145886 ttgt 10145883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 13196569 - 13196771
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||| || |||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  13196569 ctcacattttt-attgagttccatagggaggaccttggaggtggaaatgttgcatcatgttctgaagcatttggttattctcttcggatatgcggttgcc 13196667  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
     | ||||||||| || ||||  | ||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  13196668 tcttaggacatcattccttagcctggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcagtttgcatccatgcccatctttca 13196767  T
Q  297 ttgt 300  Q
    ||||    
T  13196768 ttgt 13196771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 12188215 - 12188417
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12188215 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaaatgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 12188313  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  || ||||| || ||||||||||| ||||||||||| |||||||||||||| ||  |||||||||||||||||||||||    
T  12188314 ccgtaggacatcatttcttagcccagataagtcaacaccttgcctttgttgctcggttcttatcctttgtacctcggtttgcatccatgcccatctttca 12188413  T
Q  297 ttgt 300  Q
    ||||    
T  12188414 ttgt 12188417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 109 - 300
Target Start/End: Original strand, 13188568 - 13188759
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    |||||||||||||||| || || || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13188568 attgaggtccatagggagggccctgaaggtgtaaatgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 13188667  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcattgt 300  Q
     |||||||  || |||||||| ||||||||||| ||||||||||||| |||||||||||| ||  |||||||||||||||||||||||||||    
T  13188668 atttcttagcccagataattcaacaccttgcctttgttgctcggtgcctatcctttgtacctcggtttgcatccatgcccatctttcattgt 13188759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 113 - 300
Target Start/End: Original strand, 16374634 - 16374821
Alignment:
Q  113 aggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatcgttt 212  Q
    |||||||||||| || || || ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16374634 aggtccatagggagggccctgaaggtgtaagtgttgcatcatgttccaaagcatttggttattttcttcggatatgcggttgccccgtaggacatcattt 16374733  T
Q  213 cttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcattgt 300  Q
    ||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||||    
T  16374734 cttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttcattgt 16374821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 12194629 - 12194831
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| |  || || ||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12194629 ctcacattttt-attgaggtccatagggagagccctgaaggtgtaaatgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 12194727  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  || ||||| || ||||||||||| ||||||||||| |||||||||||||| ||  |||||||||||||||| ||||||    
T  12194728 ccgtaggacatcatttcttagcccagataagtcaacaccttgcctttgttgctcggttcttatcctttgtacctcggtttgcatccatgcccacctttca 12194827  T
Q  297 ttgt 300  Q
    ||||    
T  12194828 ttgt 12194831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 98 - 262
Target Start/End: Original strand, 20157593 - 20157757
Alignment:
Q  98 tcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccc 197  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||    
T  20157593 tcacatttttcattgaggtccatagggaggaccttggaggtgaaagtgttgcatcatgttctgaagcatttggttattttcttgggatatgcggttgccc 20157692  T
Q  198 cgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    | ||||||||| |||||||| || || ||||| ||||| ||||| |||| |||||||||||||||    
T  20157693 cttaggacatcatttcttaatcctgaaaattcaacaccctgcctttgtttctcggtgcttatcct 20157757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 15945692 - 15945489
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15945692 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttgttttcttcggatatgcggttg 15945593  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||||| ||||||| || ||||  ||   |||||| ||||||||||| |||||||||||||||||||| |  || ||  | ||||||||||||||||||     
T  15945592 ccccgttggacatcattccttattcccattaattcaacaccttgcctttgttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttg 15945493  T
Q  295 catt 298  Q
    ||||    
T  15945492 catt 15945489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 108 - 298
Target Start/End: Original strand, 12161214 - 12161404
Alignment:
Q  108 cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacat 207  Q
    ||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  12161214 cattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccacttaggacat 12161313  T
Q  208 cgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    | || ||||  || |  ||||| ||||||||||| |||||||||||| ||||||| |  || ||  | |||||||||||||||||| ||||    
T  12161314 cattccttagtcccgtcaattcaacaccttgcctttgttgctcggtgtttatcctctcgacctcggtatgcatccatgcccatcttgcatt 12161404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 3340356 - 3340559
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  3340356 ctcacatttttatcattggggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttgttttcttcggatatgcggttg 3340455  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||||| ||||||| || ||||  ||   |||||| ||||||||||| ||||||||||||||||||||||  || ||  | | ||||||||||||||||     
T  3340456 ccccgttggacatcattccttattcccattaattcaacaccttgcctttgttgctcggtgcttatcctttcgacctcggtattcatccatgcccatcttg 3340555  T
Q  295 catt 298  Q
    ||||    
T  3340556 catt 3340559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 97 - 293
Target Start/End: Original strand, 13505652 - 13505850
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||| |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13505652 ctcacatttttatcattgtggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttgttttcttcggatatgcggttg 13505751  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctt 293  Q
    |||| | ||||||| || ||||  ||   |||||| ||||||||||| ||||||||||||||||||||||  || ||  ||| ||||||||||||||||    
T  13505752 cccctttggacatcattccttattcccattaattcaacaccttgcctttgttgctcggtgcttatcctttcgacctcggttttcatccatgcccatctt 13505850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 97 - 262
Target Start/End: Complemental strand, 4369749 - 4369584
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  4369749 ctcacatttttcattgagttctatagggaggaccttggaggtgaaaatggtgcatcatgttctgaagcatttggttattttcttcggatatgcggttgcc 4369650  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||| || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  4369649 ccttaggacatcattccttagtcccgaaaattcaacaccttgccttagttgcttggtgcttatcct 4369584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 22165443 - 22165608
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||  |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22165443 ctcacatttttcattgagttctataggtaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 22165542  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    |  ||||||||  || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  22165543 ctttaggacataattccttagtcccgacaattcaacaccttgccttagttgcttggtgcttatcct 22165608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 297
Target Start/End: Complemental strand, 13693954 - 13693754
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||||| ||||||||||||| || ||| | ||||||||||||||||||||| ||||| ||||||   ||| |||||||    
T  13693954 ctcacatttttcattgaggtccatagggaggaccttggaggttgaggtgtttcatcatgttccgaagcatttgattattctcttcgatgatgtggttgcc 13693855  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |  ||||||||| ||||  |  ||||||| ||| ||||||||||| ||||||||||||||||||||||  || ||  ||| |||||||| ||||||||||    
T  13693854 ctttaggacatcatttcggagtccggatagttcaacaccttgcctttgttgctcggtgcttatcctttcaacctcggtttacatccatgtccatctttca 13693755  T
Q  297 t 297  Q
    |    
T  13693754 t 13693754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 107 - 262
Target Start/End: Complemental strand, 17386821 - 17386666
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||  | ||||||||||||||||| |||||||| |||||||||||||  ||||||    
T  17386821 tcattgaggtccataaggaggaccttggaggtggaagtgttgcatcataattcgaagcatttggttattatcttcggagatgcggttgcccctaaggaca 17386722  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || |||| ||  ||||||||||| ||||||||||| ||||||||| ||||||||||    
T  17386721 tcatttcgtagcccggataattcaacaccttgcctttgttgctcgttgcttatcct 17386666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 10603672 - 10603873
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||  |||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10603672 ctcacatttttcattgagttctataggtaggaccttggaggtgaagatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 10603771  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||  || ||||  || || ||||| ||||||| |||  |||||| |||| ||||||| |   | ||| | |||||||||||||||||| ||    
T  10603772 ccttaggacataattccttagtcccgacaattccacaccttcccttagttgcttggtgtttatcctctcagcctcagtatgcatccatgcccatcttgca 10603871  T
Q  297 tt 298  Q
    ||    
T  10603872 tt 10603873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 148 - 300
Target Start/End: Original strand, 14446755 - 14446907
Alignment:
Q  148 gcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttg 247  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||| ||  ||||||||||| ||||||| ||| | |||    
T  14446755 gcatcatgttccgaagcatttgattattttcttcggatatgcggttgccccttaggacgtcgtttcgtagtccggataattcaacaccttcccttttttg 14446854  T
Q  248 ctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcattgt 300  Q
    ||||||||||||||| |  || ||||| || ||||||| ||||||||||||||    
T  14446855 ctcggtgcttatcctctcaacctcattgtgtatccatgtccatctttcattgt 14446907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 208
Target Start/End: Complemental strand, 15644156 - 15644043
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15644156 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 15644057  T
Q  195 ccccgtaggacatc 208  Q
    |||| | |||||||    
T  15644056 cccctttggacatc 15644043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 141 - 298
Target Start/End: Complemental strand, 3278501 - 3278344
Alignment:
Q  141 aagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatcgtttcttaaaccggataattcgacaccttgcc 240  Q
    ||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||| | || |||||| |||||||  ||||||||||| |||||||| |    
T  3278501 aagtgttgcatcatgttccgaagcatttgattattctcttcggatatgcggttgcctcttatgacatcatttcttatcccggataattcaacaccttgtc 3278402  T
Q  241 tctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    | ||||||| |||| ||||||| |  || ||| |||||||||||||||||||||||||    
T  3278401 tttgttgcttggtgtttatcctctcaacctcagtttgcatccatgcccatctttcatt 3278344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 97 - 197
Target Start/End: Original strand, 10161325 - 10161427
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10161325 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 10161424  T
Q  195 ccc 197  Q
    |||    
T  10161425 ccc 10161427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 97 - 262
Target Start/End: Complemental strand, 16654792 - 16654627
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||  |||||||||||||| |  |||||||||||||||||||||||||| |||||||||||||||||||| |||||    
T  16654792 ctcacatttttcattgagttctataggtaggaccttggaggtgaagatggtgcatcatgttccgaagcatttgattattttcttcggatatgcgattgcc 16654693  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||  || ||||  |  || |||||  ||||||||||  |||||| ||||||||||||    
T  16654692 ccttaggacataattccttagtctcgacaattcatcaccttgccttagttgcttggtgcttatcct 16654627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 112 - 289
Target Start/End: Original strand, 3246657 - 3246834
Alignment:
Q  112 gaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatcgtt 211  Q
    ||||| |||| ||||||||||||||||| | ||| ||||||||||| |  |||||||| || |||| |||   ||| || ||||||| ||||||||||||    
T  3246657 gaggttcataaggtggaccttggaggtgaaggtgttgcatcatgtttcagagcatttgattgttttattcatttattcgattgccccttaggacatcgtt 3246756  T
Q  212 tcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    |||||  |||  || ||| |||||||| || ||||||||||||| ||| | ||| || ||  ||||||| ||||||||    
T  3246757 tcttagcccgattatttcaacaccttgtctttgttgctcggtgcatattcgttgaacttcggtttgcatgcatgccca 3246834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 142; Significance: 2e-74; HSPs: 1)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 98 - 295
Target Start/End: Complemental strand, 197 - 1
Alignment:
Q  98 tcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccc 197  Q
    |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  197 tcacattttt-attgaggtccatagggaggaccttggaggtggaagtgttgcatcatgttctgaagcatttggttattttcttcggatatgcggttgccc 99  T
Q  198 cgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttc 295  Q
    | ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||| |||| |||||||||||||||||    
T  98 cttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcagtttgtatccatgcccatctttc 1  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 20236555 - 20236353
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20236555 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 20236457  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||||||||||| |    
T  20236456 ccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttta 20236357  T
Q  297 ttgt 300  Q
    ||||    
T  20236356 ttgt 20236353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 19876814 - 19877014
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| | ||||||||| ||||||||||| || ||||||||||  ||| |||||||    
T  19876814 ctcacattttt-attgaggtccataaggaggaccttggaggtggaagtgctccatcatgtttcgaagcatttgattgttttcttcggtcatgtggttgcc 19876912  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  | ||| | ||| |||||||| || ||||||||||||||||||||||| || ||| |||||||||||||||||||||||    
T  19876913 ccttaggacatcatttcttagcctggagagttcaacaccttgtctttgttgctcggtgcttatcctttggacctcagtttgcatccatgcccatctttca 19877012  T
Q  297 tt 298  Q
    ||    
T  19877013 tt 19877014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 107 - 264
Target Start/End: Complemental strand, 20392557 - 20392400
Alignment:
Q  107 tcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggaca 206  Q
    ||||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||| | |||||    
T  20392557 tcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttgttctcttcggatatgcggttgcccctttggaca 20392458  T
Q  207 tcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    ||||| ||||  ||   |||||| ||||||||||| ||||||||||||||||||||||    
T  20392457 tcgttccttattcccattaattcaacaccttgcctttgttgctcggtgcttatccttt 20392400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 97 - 262
Target Start/End: Complemental strand, 3989163 - 3988998
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||| |||||||||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||||||||    
T  3989163 ctcacatttttcattgagttctatagggaggaccttggaggtgaaaatggtgcatcatgttctgaagcatttggttattttcttcagatatgcggttgcc 3989064  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||| || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  3989063 ccttaggacatcattccttagtcccgacaattcaacaccttgccttagttgcttggtgcttatcct 3988998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 20072071 - 20072274
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||| ||||||||||||  |||| || ||||||||||| | ||| |||||||| |||| |||| |||| |||||||||| ||  |||||||||||    
T  20072071 ctcacatttgtcattgaggtccgcagggagggccttggaggtgtaggtgttgcatcatattccaaagcctttgattattttctttggtgatgcggttgcc 20072170  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    ||||||||| || |||| ||  ||||||||| ||||||||||||| |||| ||||||| ||||||| | ||| ||||| || ||||||||||||||||||    
T  20072171 ccgtaggacctcatttcatagtccggataatccgacaccttgcctttgtttctcggtgtttatcctctctacctcattgtgtatccatgcccatctttca 20072270  T
Q  297 ttgt 300  Q
    ||||    
T  20072271 ttgt 20072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 97 - 208
Target Start/End: Original strand, 21799811 - 21799924
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21799811 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 21799910  T
Q  195 ccccgtaggacatc 208  Q
    |||| | |||||||    
T  21799911 cccctttggacatc 21799924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 106 - 298
Target Start/End: Complemental strand, 8652090 - 8651899
Alignment:
Q  106 ttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggac 205  Q
    |||||||||||||||| || | ||||||||||| ||  || ||||||||||||||||||||||| ||||| ||||||||||| |||||| ||| ||||||    
T  8652090 ttcattgaggtccataaggagaaccttggaggttgagatgttgcatcatgttccgaagcatttgattattctcttcggatatacggttgtcccttaggac 8651991  T
Q  206 atcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    ||| |||||| | || |||| ||| |||| |||||| |||||||||||||||||| |||  || ||  | |||||||||||||||||||||||    
T  8651990 atcatttctt-agcccgatagttcaacacattgcctttgttgctcggtgcttatcatttcaacctcggtgtgcatccatgcccatctttcatt 8651899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 106 - 259
Target Start/End: Original strand, 8948700 - 8948853
Alignment:
Q  106 ttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggac 205  Q
    |||||||||||||||| || ||| |||||||||||||||| |||||||||||  |||||||||| |||||||||   |||||||||||||| | ||||||    
T  8948700 ttcattgaggtccataaggaggatcttggaggtggaagtgttgcatcatgttatgaagcatttgattattttctattgatatgcggttgcctcttaggac 8948799  T
Q  206 atcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttat 259  Q
    ||| |||| ||  |||||||| || ||||||||||| ||||| |||||||||||    
T  8948800 atcatttcgtagtccggataactcaacaccttgcctttgttgttcggtgcttat 8948853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 289
Target Start/End: Original strand, 21785664 - 21785761
Alignment:
Q  192 ttgccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    ||||||| |||||||||||||||||| |||   | ||| |||||||| || ||||||||||||| | | ||||| || ||  ||||||||||||||||    
T  21785664 ttgccccttaggacatcgtttcttaacccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgccca 21785761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0216 (Bit Score: 132; Significance: 2e-68; HSPs: 1)
Name: scaffold0216
Description:

Target: scaffold0216; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 103 - 298
Target Start/End: Complemental strand, 10486 - 10291
Alignment:
Q  103 tttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtag 202  Q
    |||||||||| ||||||||||| |||||||||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  10486 tttttcattggggtccatagggaggaccttggagtcggaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcgattgccccttag 10387  T
Q  203 gacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    |||||  ||||| || ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||||    
T  10386 gacattatttctaaacccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttcatt 10291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 132; Significance: 2e-68; HSPs: 2)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 115720 - 115519
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  115720 ctcacattttt-attgaggtccatagggaggaccttggaggtggaagtgttgcatcatgttccgaagcatttggttattctcttcggatatgcggtttcc 115622  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||| | ||  ||||||||||||| |||||||||    
T  115621 ccttaggacatcatttcttagcccggataattcaacaccttgcct-tgttgctcggtgcttatcctttgttcctcggtttgcatccatgctcatctttca 115523  T
Q  297 ttgt 300  Q
    ||||    
T  115522 ttgt 115519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 120024 - 119823
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||    
T  120024 ctcacattttt-attgaggtccatagggaggaccttggaggtggaagtgttgcatcatgttccgaagcatttggttattctcttcggatatgcggtttcc 119926  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||| | ||  ||||||||||||| |||||||||    
T  119925 ccttaggacatcatttcttagcccggataattcaacaccttgcct-tgttgctcggtgcttatcctttgttcctcggtttgcatccatgctcatctttca 119827  T
Q  297 ttgt 300  Q
    ||||    
T  119826 ttgt 119823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 97 - 298
Target Start/End: Original strand, 32717 - 32917
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||  || ||||||||||||||||| ||||  ||||| ||||||||||||||||||||    
T  32717 ctcacatttttcattgaggtccatagggaggaccttggaggttgagatgttgcatcatgttccgaagaatttaattattctcttcggatatgcggttgcc 32816  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |||||||||||| |||||||  ||||||| ||| ||||||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  32817 ccgtaggacatcatttcttagcccggatagttcaacaccttgcct-tgttgctcggtgcttatcctttgtacctcagtttgcatccatgcccatctttca 32915  T
Q  297 tt 298  Q
    ||    
T  32916 tt 32917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1620 (Bit Score: 128; Significance: 4e-66; HSPs: 1)
Name: scaffold1620
Description:

Target: scaffold1620; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 134 - 337
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||| ||||| ||||||||||||| || ||| ||||||||||||||||||||||| ||||| |||||||||||||||||||     
T  134 ctcacatttttcattgaggtccgtagggaggaccttggaggttgaggtgttgcatcatgttccgaagcatttgattattctcttcggatatgcggttgcg 233  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |  |||||||||||||||||  ||||||| |||  | |||||||| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||    
T  234 ctttaggacatcgtttcttagcccggatagttcctcgccttgcctttgttgctcggtgcttatcctttgtacctcagtttgcatccatgcccatctttca 333  T
Q  297 ttgt 300  Q
    ||||    
T  334 ttgt 337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 128; Significance: 4e-66; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 22110034 - 22109832
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || || || ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22110034 ctcacattttt-attgaggtccatagggagggccctgaaggtgtaagtgttgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 22109936  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    | | |||||||| |||||||  || |||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||||    
T  22109935 ctgaaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatctttca 22109836  T
Q  297 ttgt 300  Q
    ||||    
T  22109835 ttgt 22109832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 15253420 - 15253217
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||| || |||||||||| |||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  15253420 ctcacattttt-attgaggtccatagggagggccttggaggttgaagtgttgcatcatgttccggagcatttggttattctcttcggatatgcggttgcc 15253322  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgt-cattttgcatccatgcccatctttc 295  Q
    || ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| | |  |||||||||||||| |||||||    
T  15253321 ccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctgcggtttgcatccatgccaatctttc 15253222  T
Q  296 attgt 300  Q
    |||||    
T  15253221 attgt 15253217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 97 - 294
Target Start/End: Complemental strand, 15864580 - 15864383
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  15864580 ctcacatttttcatggaggtccatagggaggaccttggaggtggaagtggtgcatcatgttccgaagcatttagttattttctttggatatgtggttgcc 15864481  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    || |||||||||||||| ||  ||||||||||| |||||||| |  |||||||| ||||||||||| |  || ||||| || ||||||| ||||||||    
T  15864480 ccttaggacatcgtttcgtagtccggataattcaacaccttgtcattgttgctcagtgcttatcctctcaacctcattgtgtatccatgtccatcttt 15864383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 3353692 - 3353491
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||||||||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  3353692 ctcacatttttcattgaggtctatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggtttcc 3353593  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |  ||||||||| || ||||  || || ||||| ||||||||||| ||||||||||| |||||||| |  || ||  | |||||||||||||||||| ||    
T  3353592 ctttaggacatcattccttagtcccgacaattcaacaccttgcctttgttgctcggtacttatcctctcgacctcggtgtgcatccatgcccatcttgca 3353493  T
Q  297 tt 298  Q
    ||    
T  3353492 tt 3353491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 114 - 298
Target Start/End: Original strand, 15261242 - 15261426
Alignment:
Q  114 ggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatcgtttc 213  Q
    |||||||| || |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || |    
T  15261242 ggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttgttttcttcggatatgcggttgccccgttggacatcattcc 15261341  T
Q  214 ttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    |||  ||   |||||| ||||||||||| ||||||||||||||||||||||  || ||  | | |||||||||||||||| ||||    
T  15261342 ttatgcccattaattcaacaccttgcctttgttgctcggtgcttatcctttcgacctcggtattcatccatgcccatcttgcatt 15261426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 13821986 - 13821817
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13821986 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 13821887  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |||| | ||||||||| |||||  |     | ||| ||||||||||| ||||||||||||||||| ||||    
T  13821886 cccctttggacatcgtgtcttatgctcatgagttcaacaccttgcctttgttgctcggtgcttattcttt 13821817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 11497751 - 11497931
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    ||||| ||||||| ||||||||||||||||| | ||| ||||||||||  || | |||||| || |||| |||   |||  | ||||||| |||||||||    
T  11497751 attgaagtccataaggtggaccttggaggtgaaggtgttgcatcatgtatcggaacatttgattgttttattcatttatttgattgccccttaggacatc 11497850  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    ||||||||  |||   | ||| |||||||| || ||||||||||||| | | ||||| || ||  ||||||||||||||||    
T  11497851 gtttcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacatcggtttgcatccatgccca 11497931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 15348981 - 15349162
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcgg-ttgccccgtaggacat 207  Q
    ||||| || |||| ||||||||||||||||| | ||| ||||||||||  || | |||||| ||||||| |||   |||   | ||||||| ||||||||    
T  15348981 attgaagttcataaggtggaccttggaggtgaaggtgttgcatcatgtatcggaacatttgattattttattcatttattttgattgccccttaggacat 15349080  T
Q  208 cgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    |||||||||  |||   | ||| |||||||| || ||||||||||||| | | ||||| || ||  ||||||||||||||||    
T  15349081 cgtttcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgccca 15349162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0473 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: scaffold0473
Description:

Target: scaffold0473; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 97 - 300
Target Start/End: Complemental strand, 13112 - 12910
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||| ||| |||||||||||||||||||| ||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  13112 ctcacattttt-attgaggtccatcgggaggaccttggaggtggaagtgttgcatcatggtccgaagcatttggttattctcttcggatatgcggttgcc 13014  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||    ||||||||| |||||||| || |||||||||||||||||||||||||| ||  |||||||||||||||||||| ||    
T  13013 ccttaggacatcatttcttagcttggataattcaacaccttgtctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatcttaca 12914  T
Q  297 ttgt 300  Q
    ||||    
T  12913 ttgt 12910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 19407 - 19573
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggtta-ttttcttcggatatgcggttgc 195  Q
    |||||||||||||||||||||||||||| |||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19407 ctcacatttttcattgaggtccatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttatttttcttcggatatgcggttgc 19506  T
Q  196 cccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    ||| ||||||||| || ||||  || |||||||| ||||||||||| || |||||||||||||||||    
T  19507 cccttaggacatcattccttagtcccgataattcaacaccttgcctttgatgctcggtgcttatcct 19573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 104 - 262
Target Start/End: Original strand, 19121 - 19279
Alignment:
Q  104 ttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtagg 203  Q
    ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||    
T  19121 ttttcattgaggtccatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccgcttagg 19220  T
Q  204 acatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    ||||| |||||||  || || ||||| ||||||||||| ||||||||||||||||||||    
T  19221 acatcatttcttagtcccgacaattcaacaccttgcctttgttgctcggtgcttatcct 19279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 97 - 264
Target Start/End: Original strand, 253024 - 253191
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||| ||||||||||||| | ||||| ||||||| || ||| |||||||||||||||| |||||| ||||| |||||||  ||| |||||||    
T  253024 ctcacatttttcgttgaggtccatagtgaggaccgtggaggttgaggtgttgcatcatgttccgaaacatttgattattctcttcggtgatgtggttgcc 253123  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    |  ||||||||| ||| | |  ||||||| ||| ||||||||||| ||||||||||||||||||||||    
T  253124 ctttaggacatcatttatgagtccggatagttcaacaccttgcctttgttgctcggtgcttatccttt 253191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 11604 - 11403
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||| ||||||||||||||||||||||| ||||||||||||| ||  || | ||||||||||||||||||| | |||||||||||||||||| | |||||    
T  11604 ctcagatttttcattgaggtccatagggaggaccttggaggttgagatgttacatcatgttccgaagcattcgattattttcttcggatatgtgattgcc 11505  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||| ||||||| ||||||||||| ||||| |||||||||||||||||||| ||  |||||||||||||||||||| ||    
T  11504 ccttaggacatcatttcttagcccgaataattcaacaccttgcctttgttgttcggtgcttatcctttgtacctcggtttgcatccatgcccatcttgca 11405  T
Q  297 tt 298  Q
    ||    
T  11404 tt 11403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 109; Significance: 8e-55; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 29571 - 29368
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  |||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29571 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 29472  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||||| ||||||| || ||||  ||   |||||| ||||||||||| |||||||||||||||||||| |  || ||  | ||||||||||||||||||     
T  29471 ccccgttggacatcattccttattcccattaattcaacaccttgcctttgttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttg 29372  T
Q  295 catt 298  Q
    ||||    
T  29371 catt 29368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0506 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0506
Description:

Target: scaffold0506; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 103 - 262
Target Start/End: Original strand, 3201 - 3360
Alignment:
Q  103 tttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtag 202  Q
    |||||||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  3201 tttttcattgaggtccatagggaggaccttgaaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccttag 3300  T
Q  203 gacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    |||||| || ||||  || |  ||||| ||||||||||| ||||||||||||||||||||    
T  3301 gacatcattccttagtcccgtcaattcaacaccttgcctttgttgctcggtgcttatcct 3360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1571 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold1571
Description:

Target: scaffold1571; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 161 - 300
Target Start/End: Complemental strand, 1633 - 1494
Alignment:
Q  161 aagcatttggttattttcttcggatatgcggttgccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatc 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||||||| ||||||||||| ||||||||||||||||||    
T  1633 aagcatttggttattttcttcggatatgcggttgccccgtaggacatcatttcttagcccagataattcaacaccttgcctttgttgctcggtgcttatc 1534  T
Q  261 ctttgtacgtcattttgcatccatgcccatctttcattgt 300  Q
    |||||||| ||  |||||||||||||||||||||||||||    
T  1533 ctttgtacctcggtttgcatccatgcccatctttcattgt 1494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 104; Significance: 8e-52; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 103 - 298
Target Start/End: Original strand, 25532 - 25727
Alignment:
Q  103 tttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtag 202  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25532 tttttcattaaggtccatagggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccttag 25631  T
Q  203 gacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    |||||  || ||||  || |   |||| ||||||||||| ||||| |||||||||||||| |  || ||| | |||||||||||||||||| ||||    
T  25632 gacattattccttagtcctgtcgattcaacaccttgcctttgttgttcggtgcttatcctctcgacctcagtatgcatccatgcccatcttgcatt 25727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0402 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0402
Description:

Target: scaffold0402; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 6961 - 6760
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| |||||||||||||||||||||||||||||| ||  || ||||||||||| ||||||||||| ||||| |||||||||||| |||| ||    
T  6961 ctcacattttttattgaggtccatagggtggaccttggaggttgagatgttgcatcatgtttcgaagcatttgattattctcttcggatatgtggtttcc 6862  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||||||  ||| ||||||| ||| ||||| | | |||||||||||||||| ||||||| ||| ||| |||||||||| ||||||||    
T  6861 ccttaggacatcatttcttagcccgaataattcaacatcttgcttttattgctcggtgcttatcatttgtacctcagtttacatccatgccgatctttca 6762  T
Q  297 tt 298  Q
    ||    
T  6761 tt 6760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0142 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 97 - 262
Target Start/End: Original strand, 22132 - 22297
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||||| ||||||| |||||| |||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22132 ctcacatttttcaatgaggtctatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 22231  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||| || ||||  || || ||||| |||||||||||  |||||| ||||||||||||    
T  22232 ccttaggacatcattccttagtcccgacaattcaacaccttgccttagttgcttggtgcttatcct 22297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0215 (Bit Score: 101; Significance: 5e-50; HSPs: 1)
Name: scaffold0215
Description:

Target: scaffold0215; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 97 - 300
Target Start/End: Original strand, 8123 - 8327
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||| ||||||||||||  | || || ||||||||||| | ||| |||||||| |||||||||||||| |||||||||||||  |||||||||||    
T  8123 ctcacatttgtcattgaggtccgcatggagggccttggaggtgtaggtgttgcatcatattccgaagcatttgattattttcttcggtgatgcggttgcc 8222  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtg-cttatcctttgtacgtcattttgcatccatgcccatctttc 295  Q
    |||||||||||| |||||||  ||||||||| ||||||||||||| ||||||||||||  ||||||| | ||| ||||| || |||||||||||||||||    
T  8223 ccgtaggacatcatttcttagtccggataatccgacaccttgcctttgttgctcggtgttttatcctctctacctcattgtgtatccatgcccatctttc 8322  T
Q  296 attgt 300  Q
    |||||    
T  8323 attgt 8327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 97 - 293
Target Start/End: Complemental strand, 24647 - 24449
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 194  Q
    |||||||||||  ||||| ||||| || || |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24647 ctcacatttttgtcattggggtccgtatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttg 24548  T
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctt 293  Q
    |||| | ||||||| || ||||  ||   |||||| ||||||||||| ||||||||||||||||||||||  || ||| | ||||||||| ||||||||    
T  24547 cccctttggacatcattccttagtcccattaattcaacaccttgcctttgttgctcggtgcttatcctttcgacctcagtatgcatccattcccatctt 24449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 104 - 262
Target Start/End: Complemental strand, 90352 - 90194
Alignment:
Q  104 ttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtagg 203  Q
    |||| |||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||    
T  90352 tttttattgaggtccatagggaggaccttggaggtgaaagtggtgcatcatgtttcgaagcatttggttattttcttcggatatgcggttgccccttagg 90253  T
Q  204 acatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    ||||| || ||||  || |  ||||| ||||||||||| |||||||||||| |||||||    
T  90252 acatcattccttagtcccgtcaattcaacaccttgcctttgttgctcggtgtttatcct 90194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1095 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold1095
Description:

Target: scaffold1095; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 295
Target Start/End: Complemental strand, 2351 - 2153
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||| | ||||||||||||| || ||| |||||||||||||||| |||||| ||||| |||||||  ||| |||||||    
T  2351 ctcacatttttcattgaggtccatagcgaggaccttggaggttgaggtgttgcatcatgttccgaatcatttgattattctcttcggcgatgtggttgcc 2252  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttc 295  Q
    || ||||||||| ||||  |  ||||||||||| ||| ||||||| ||||||||||||||||||||||  || ||  |||||||||||| |||||||||    
T  2251 ccttaggacatcatttcggagcccggataattcaacatcttgcctttgttgctcggtgcttatcctttcaacctcggtttgcatccatgtccatctttc 2153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 97 - 298
Target Start/End: Complemental strand, 21958 - 21756
Alignment:
Q  97 ctcacatttttcatt-gaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgc 195  Q
    ||||||||||||||| ||| || |||||| |||||||||||||  || ||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  21958 ctcacatttttcatttgagttctatagggaggaccttggaggtcaaaatggtgcatcatgttctgaagcatttggttattttcttcggatatgcggttgc 21859  T
Q  196 cccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttc 295  Q
    ||| ||||||||| || ||||  || || ||||| ||||||| ||| |||||||||||||||||||| |  || ||  | |||||||||||||||||| |    
T  21858 cccttaggacatcattccttagtcccgacaattcaacacctttcctttgttgctcggtgcttatcctctcgacctcggtatgcatccatgcccatcttgc 21759  T
Q  296 att 298  Q
    |||    
T  21758 att 21756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0322 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold0322
Description:

Target: scaffold0322; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 97 - 211
Target Start/End: Complemental strand, 7869 - 7756
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  7869 ctcacatttttcatggaggtccatagggaggaccttggaggtggaa-tggtgcatcatattccgaagcatttggttattttcttcggatatgcgcttgcc 7771  T
Q  197 ccgtaggacatcgtt 211  Q
    |||||||||||||||    
T  7770 ccgtaggacatcgtt 7756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 90; Significance: 2e-43; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 97 - 262
Target Start/End: Complemental strand, 1215 - 1050
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || ||| || |||||||||||||| || |||||||||||||||||||| ||||||||||||| ||||||||||||||||||    
T  1215 ctcacatttttcattgagttctataaggaggaccttggaggtgaaaatggtgcatcatgttccgaagtatttggttattttattcggatatgcggttgcc 1116  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    || ||||||||| || ||||  || || ||||| |||||||||||  |||||||| ||||||||||    
T  1115 ccttaggacatcattccttagtcccgacaattcaacaccttgccttagttgctcgatgcttatcct 1050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0346 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0346
Description:

Target: scaffold0346; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 297
Target Start/End: Original strand, 4730 - 4930
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||| ||||||||||||||||||||| |||||||||||||  | ||| |||||||||| |||||||||||| ||||| |||||||  ||| |||||||    
T  4730 ctcacaattttcattgaggtccatagggaggaccttggaggtttaggtgttgcatcatgtgccgaagcatttgattattctcttcggtgatgtggttgcc 4829  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    || ||||||||| |||   |  | ||||||||| ||||||||||| ||||||||||||||||||||||  || ||  |||||||||||| ||||||||||    
T  4830 ccttaggacatcattttggagtctggataattcaacaccttgcctttgttgctcggtgcttatcctttcaacctcggtttgcatccatgtccatctttca 4929  T
Q  297 t 297  Q
    |    
T  4930 t 4930  T

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Target: scaffold0156 (Bit Score: 89; Significance: 7e-43; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 97 - 297
Target Start/End: Original strand, 7633 - 7833
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||||||||||||| |||||||||| || || ||| |||||||||||| |||||||||| ||||| |||||||  |||||||||||    
T  7633 ctcacatttttcattgaggtccatagggaggaccttggaagttgaggtgttgcatcatgttctgaagcatttgattattctcttcggtgatgcggttgcc 7732  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttca 296  Q
    |  ||||||||  ||||  |  ||||||| ||| ||||||||||| ||||| ||||||||||||||||  || ||  |||||||||||| ||||||||||    
T  7733 ctttaggacattatttcggagtccggatagttcaacaccttgcctttgttgttcggtgcttatcctttcaacctcggtttgcatccatgtccatctttca 7832  T
Q  297 t 297  Q
    |    
T  7833 t 7833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 44507 - 44342
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| |  |||||||||||||||||||||||||| |||||||||||| |||||||    
T  44507 ctcacattttttattgaggtccataagg-ggaccttggaggtggaagtgttatatcatgttccgaagcatttggttattctcttcggatatg-ggttgcc 44410  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    || ||||||||| ||||  |  || |||||||| |||| |||||| ||||||||||||||||||||||    
T  44409 ccttaggacatcatttcggagccctgataattcaacactttgcctttgttgctcggtgcttatccttt 44342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0037; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 97 - 264
Target Start/End: Complemental strand, 51896 - 51731
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| ||||||||||||| || |||||||||||||||||||| |  |||||||||||||||||||||||||| |||||||||||| |||||||    
T  51896 ctcacattttttattgaggtccataagg-ggaccttggaggtggaagtgttatatcatgttccgaagcatttggttattctcttcggatatg-ggttgcc 51799  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatccttt 264  Q
    || ||||||||| ||||  |  || |||||||| |||| |||||| ||||||||||||||||||||||    
T  51798 ccttaggacatcatttcggagccctgataattcaacactttgcctttgttgctcggtgcttatccttt 51731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0230 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 104 - 262
Target Start/End: Complemental strand, 12549 - 12391
Alignment:
Q  104 ttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtagg 203  Q
    ||||||||||| || |||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  12549 ttttcattgagttctatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccttagg 12450  T
Q  204 acatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcct 262  Q
    ||||  || ||||  || || ||||| |||| ||||||  |||||| ||||||||||||    
T  12449 acataattccttagtcccgacaattcaacacattgccttagttgcttggtgcttatcct 12391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 81; Significance: 4e-38; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 97 - 261
Target Start/End: Complemental strand, 122447 - 122283
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    |||||||||||||||||| || |||||| |||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||| |||    
T  122447 ctcacatttttcattgagttctatagggaggaccttggaggtgaaaatggtgcatcatgttccgaagcattttgttattttcttcggatatgcggtcgcc 122348  T
Q  197 ccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcc 261  Q
    |  ||||||||  || ||||  || || ||||| ||||||| |||  |||||| |||||||||||    
T  122347 cgttaggacattattccttagtcccgacaattcaacaccttaccttagttgcttggtgcttatcc 122283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 164 - 298
Target Start/End: Complemental strand, 132635 - 132501
Alignment:
Q  164 catttggttattttcttcggatatgcggttgccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctt 263  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| || ||||  || |||||||| |||||||||||  ||||||||||||||||||||    
T  132635 catttggttattttcttcggatatgcggttgccccttaggacatcattccttagtcccgataattcaacaccttgccttagttgctcggtgcttatcctt 132536  T
Q  264 tgtacgtcattttgcatccatgcccatctttcatt 298  Q
    |  || ||  |||||||||||| ||||||||||||    
T  132535 tcaacctcggtttgcatccatgtccatctttcatt 132501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 109 - 289
Target Start/End: Complemental strand, 17433 - 17253
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgccccgtaggacatc 208  Q
    ||||| ||||||| ||| ||||||||||||| | ||| ||||||||||  || | |||||| || || | |||   |||  | ||||||| |||||||||    
T  17433 attgaagtccataaggtagaccttggaggtgaaggtgttgcatcatgtatcggaacatttgattgttgtattcatttatttgattgccccttaggacatc 17334  T
Q  209 gtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgccca 289  Q
    ||||||||  |||   | ||| |||||||| || ||||||||||||| | | ||||| || ||  ||||||||||||||||    
T  17333 gtttcttagcccgatcatttcaacaccttgtctttgttgctcggtgcatgttctttgaacttcggtttgcatccatgccca 17253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0577
Description:

Target: scaffold0577; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 195 - 300
Target Start/End: Complemental strand, 5083 - 4978
Alignment:
Q  195 ccccgtaggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatcttt 294  Q
    |||| ||||||||| |||||||  ||||||||||| ||||||||||| |||||||||||||||||||||||||| ||  |||||||||||||||||||||    
T  5083 ccccttaggacatcatttcttagcccggataattcaacaccttgcctttgttgctcggtgcttatcctttgtacctcggtttgcatccatgcccatcttt 4984  T
Q  295 cattgt 300  Q
    ||||||    
T  4983 cattgt 4978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0577; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 97 - 198
Target Start/End: Complemental strand, 5689 - 5589
Alignment:
Q  97 ctcacatttttcattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttcttcggatatgcggttgcc 196  Q
    ||||||||||| || ||||||||||||| ||||||||| ||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5689 ctcacattttt-atggaggtccatagggaggaccttggcggttgaagtgttgcatcatgttccgaagcattttgttattttcttcggatatgcggttgcc 5591  T
Q  197 cc 198  Q
    ||    
T  5590 cc 5589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0404 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0404
Description:

Target: scaffold0404; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 104 - 28
Alignment:
Q  97 ctcacattttt--cattgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggt 171  Q
    |||||||||||  |||||||||||||| || |||||||||||||| |||||||||||||||||||||||||||||||    
T  104 ctcacatttttatcattgaggtccatatggaggaccttggaggtgaaagtggtgcatcatgttccgaagcatttggt 28  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0231 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 201 - 298
Target Start/End: Complemental strand, 21889 - 21792
Alignment:
Q  201 aggacatcgtttcttaaaccggataattcgacaccttgcctctgttgctcggtgcttatcctttgtacgtcattttgcatccatgcccatctttcatt 298  Q
    ||||||||||| ||||  |||| || ||| ||||||||||| ||||| |||||||||||||| || || ||  |||||||||||||||||||||||||    
T  21889 aggacatcgttccttagcccggttatttcaacaccttgcctttgttgttcggtgcttatcctctgaacctccgtttgcatccatgcccatctttcatt 21792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 179
Target Start/End: Original strand, 11055 - 11125
Alignment:
Q  109 attgaggtccatagggtggaccttggaggtggaagtggtgcatcatgttccgaagcatttggttattttct 179  Q
    ||||||||||||| ||||||||||||||||| | ||| |||| ||||||||  |||||||| |||||||||    
T  11055 attgaggtccataaggtggaccttggaggtgaaggtgttgcagcatgttccagagcatttgattattttct 11125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0091 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 274 - 310
Target Start/End: Complemental strand, 55133 - 55097
Alignment:
Q  274 tttgcatccatgcccatctttcattgtgtttttcatg 310  Q
    |||||||||||||||||||||||||||| ||||||||    
T  55133 tttgcatccatgcccatctttcattgtggttttcatg 55097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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