View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7209_low_6 (Length: 306)
Name: NF7209_low_6
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7209_low_6 |
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| [»] scaffold0377 (1 HSPs) |
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| [»] scaffold0050 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 57 - 293
Target Start/End: Complemental strand, 39049098 - 39048862
Alignment:
| Q |
57 |
gtaatcatcataatgttgaaacttttaatggagcctatgttgggttgtattatcgcattagactaagagaaaacacacaaataaaattgacatcacattt |
156 |
Q |
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||||||||||||||||||||||||| | || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
39049098 |
gtaatcatcataatgttgaaactttcagtgaagcctatgttgggttgtattatcgcattagactaagtgaaaacacacaaataaaattgacatcacattt |
39048999 |
T |
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| Q |
157 |
tcatccaatatcttggtacatgtttattgctcatctcacttatatgttattcaacatatacatcatatttgacgttaacatctctctcacaagttgtcta |
256 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39048998 |
tcatccaatatcttggtacatgtttgttgctcatctcacttatatgttattcaacatatacatcatatttgacgttaacatctgtctcacaagttgtcta |
39048899 |
T |
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| Q |
257 |
actaacgtgcaactctctgcgactgtaatcatgtgat |
293 |
Q |
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| T |
39048898 |
actaatgtgcaactctctgcaactgtaatcatgtgat |
39048862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 96 - 210
Target Start/End: Complemental strand, 38292518 - 38292402
Alignment:
| Q |
96 |
ttgggttgtattatcgcattagactaagagaaaacacacaaataaaattgacatcacattttcatccaatatctt--ggtacatgtttattgctcatctc |
193 |
Q |
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||||||||||| || ||||||||||| || ||| ||||||||||| ||||||||||||||||||||||| ||||| || |||| | ||| ||||||| |
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| T |
38292518 |
ttgggttgtatcattgcattagactaggataaaccacacaaataagattgacatcacattttcatccaaaatctttaggaacatatatatgagtcatctc |
38292419 |
T |
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| Q |
194 |
acttatatgttattcaa |
210 |
Q |
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| T |
38292418 |
atttatatgttattcaa |
38292402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0377 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0377
Description:
Target: scaffold0377; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 99 - 160
Target Start/End: Original strand, 13287 - 13348
Alignment:
| Q |
99 |
ggttgtattatcgcattagactaagagaaaacacacaaataaaattgacatcacattttcat |
160 |
Q |
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| T |
13287 |
ggttgtatcgtcgtattaggttaagagaaaccacacaaataaaattgacaccacattttcat |
13348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 213
Target Start/End: Original strand, 42079659 - 42079815
Alignment:
| Q |
59 |
aatcatcataatgttgaaacttttaatggagcctatgttgggttgtattatcgcattagactaagagaaaacacacaaataaaattgacatcacattttc |
158 |
Q |
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|||||||||| ||||||||||| || |||||| || |||||||| ||| ||||| ||||||||| ||||||||| ||||||||| || |||||| |
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| T |
42079659 |
aatcatcatagtgttgaaacttccggtgcagcctacatttggttgtatcgtcgtattaggttaagagaaatcacacaaatgaaattgacaccatattttc |
42079758 |
T |
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| Q |
159 |
atccaatatctt--ggtacatgtttattgctcatctcacttatatgttattcaacat |
213 |
Q |
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|| |||| | || || | ||| ||| | |||||||||||||||| |||||||||| |
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| T |
42079759 |
atacaatttttttaggcatatgaatatagttcatctcacttatatgatattcaacat |
42079815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 86 - 137
Target Start/End: Original strand, 15618289 - 15618340
Alignment:
| Q |
86 |
ggagcctatgttgggttgtattatcgcattagactaagagaaaacacacaaa |
137 |
Q |
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| T |
15618289 |
ggagcctatgttaggttgtattatcacataaggctaagagaaatcacacaaa |
15618340 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0050 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0050
Description:
Target: scaffold0050; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 114 - 170
Target Start/End: Original strand, 11533 - 11589
Alignment:
| Q |
114 |
ttagactaagagaaaacacacaaataaaattgacatcacattttcatccaatatctt |
170 |
Q |
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| T |
11533 |
ttagaccaagagcaaccacacaagtaagattgacatcactttttcatccaaaatctt |
11589 |
T |
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