View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7209_low_9 (Length: 243)
Name: NF7209_low_9
Description: NF7209
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7209_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 3 - 243
Target Start/End: Original strand, 34432001 - 34432241
Alignment:
| Q |
3 |
catctccaataatattattactactattacttcctttgttcttgcactttatagaaatctcatgacacctacctttctcatgaaacttagctttagttga |
102 |
Q |
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| T |
34432001 |
catctccaacaacattattaccactattacttcctttgttcttacactttatagaaatctcatgacacctacctttctcatgaaacttagctttagttga |
34432100 |
T |
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| Q |
103 |
aaacttcctcttaccaaatatgtgttcctttttggaaacaagaattggatcaatgagtgatggtctacatccagttcttctgtaagcttctttctttaga |
202 |
Q |
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| T |
34432101 |
aaacttcctcttaccaaatatgtgttcctttttggaaacaagaattggatcaatgagtgatggtctacatccagttcttctgtaagcttctttctttaga |
34432200 |
T |
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| Q |
203 |
tcaccaagaagtaacacaacctcttgatcacaaaccactgc |
243 |
Q |
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| T |
34432201 |
tcaccaagaagtaacacaacctcttgatcacaaaccactgc |
34432241 |
T |
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Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 237
Target Start/End: Original strand, 43402978 - 43403162
Alignment:
| Q |
53 |
atagaaatctcatgacacctacctttctcatgaaacttagctttagttgaaaacttcctcttaccaaatatgtgttcctttttggaaacaagaattggat |
152 |
Q |
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| T |
43402978 |
atagaaatctcatgccatttacccttctcatgaaacttagctctggttgagaatttcttcttaccaaatatatgctctttctttgaaaccaatataggat |
43403077 |
T |
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| Q |
153 |
caatgagtgatggtctacatccagttcttctgtaagcttctttctttagatcaccaagaagtaacacaacctcttgatcacaaac |
237 |
Q |
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| T |
43403078 |
caataagagctggtctacaacctgttcttctataagcatcttttttaagatcaccaagaagaagaacaacctcttcatcacaaac |
43403162 |
T |
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