View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7210_low_1 (Length: 614)
Name: NF7210_low_1
Description: NF7210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7210_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 13 - 596
Target Start/End: Complemental strand, 1316189 - 1315601
Alignment:
| Q |
13 |
aatatcagcccccacacttgttttaaaggtttaaaagaaaaaacctctcatctcatgtnnnnnnnnn-tacaaatcttattttatttatttttcaaagaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
1316189 |
aatatcagcccccacacttgttttaaaggtttaaaagaaaaaacctctcatctcatgtaaaaaaaaaatacaaatcttattttatttatttttcaaagaa |
1316090 |
T |
|
| Q |
112 |
cgagtactacattgttttgaagta---atatgatgaaaatggacatcgttatctacatgtggataaattctacaagcctgtaagtaactaatttactctt |
208 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1316089 |
cgagtactacaatgttttgaagtactaatatgatgaaaatggacatcgttatctacatgtggataaattctacaagcctgtaagtaactaatttactctt |
1315990 |
T |
|
| Q |
209 |
tcaagctagtcactaaaagtctacacatatatagctattagaagctagtgacctagtgacacgtgagagttcaatttcaagttttatacaattttcaact |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1315989 |
tcaagctagtcactaaaagtctacacatatatagctattagaagctagtgacctagtgacacgtgagagttcaatttcaagtcttatacaattttcaact |
1315890 |
T |
|
| Q |
309 |
ctttaagccatttggtatgcagaggacatggatcctgcttgccttgggcaatagccttctcagaaagagcataaaaccaaccattcctccatttgaactg |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1315889 |
ctttaagccatttggtatgcagaggacatggatcctgcttgccttgggcaatagccttctcagaaagagcataaaaccaaccattcctccatttgaactg |
1315790 |
T |
|
| Q |
409 |
caaacataacatagatattgattaaaacattaata-nnnnnnngaaccatataaattcttatttataacaatgcacttaattataaatgaatattgcaat |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1315789 |
caaacataacatagatattgattaaaacattaatatttttttttaaccatataaattcttatttataacaatgcacttaattataaatgaatattgcaat |
1315690 |
T |
|
| Q |
508 |
tgggctttatttaatgaatgaaatgtgatgaataggattattctttggttaggctgccaagtgctaagaggtctctttaccctcatctg |
596 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1315689 |
tgggctttatttaatgaatgaaatgtgatgaataggattattctttggttaggctgccaagtgctaagaggtctctttaccctcatctg |
1315601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University