View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7210_low_2 (Length: 465)
Name: NF7210_low_2
Description: NF7210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7210_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 318; Significance: 1e-179; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 9219257 - 9219702
Alignment:
| Q |
1 |
gagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgttttataaattaatatca |
100 |
Q |
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| T |
9219257 |
gagatgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgttttataaattaatatca |
9219356 |
T |
|
| Q |
101 |
atagctaacatgcatgctgaatactttaatcatannnnnnncctggtcttaacccttcggcccttttagtaatcttgagttcgacttaaacttaggtaaa |
200 |
Q |
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| T |
9219357 |
atagctaacatgcatgctgaataccttaatcatatttttttcctggtcttaacccttcgacccttttagtagtctggagttcaacttaaagttagataaa |
9219456 |
T |
|
| Q |
201 |
tgtaactaaatattgttctagagtcggttatcaaactcgagtatttgcaactgattcaatcctaactaaaacttgtgacaatatatgtgggctatgctta |
300 |
Q |
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| T |
9219457 |
tgtaactaaaaattgttctagagtcagttatcaaactcgagtattcgca-ctgattcaatcttaactagaaattgtgaaaatatatgtgggttattctta |
9219555 |
T |
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| Q |
301 |
gtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgta |
400 |
Q |
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| T |
9219556 |
gtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagattgtccattaggacaaaaacattcgta |
9219655 |
T |
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| Q |
401 |
tgatccatctgtgttgcgacaatgactttcatctatacatgtgttat |
447 |
Q |
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| T |
9219656 |
aaacccatccgtgttgcgacaatgactttcacttatgcatgtgttat |
9219702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 288 - 447
Target Start/End: Original strand, 9162578 - 9162737
Alignment:
| Q |
288 |
tgggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggac |
387 |
Q |
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| T |
9162578 |
tgggctatgtttagtgacataccaatggcaaccttgataacaatatctcgtctatgacaacctccttcaagtgttccatttccagattgtccatcaggac |
9162677 |
T |
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| Q |
388 |
aaaaacattcgtatgatccatctgtgttgcgacaatgactttcatctatacatgtgttat |
447 |
Q |
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| T |
9162678 |
agaaacattcatataatccatccgtgttgcgacagtgactttcatctatacatgtgttat |
9162737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 305 - 447
Target Start/End: Original strand, 9156784 - 9156926
Alignment:
| Q |
305 |
cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgtatgat |
404 |
Q |
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||||||||||||||||||||| | | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| | ||| |
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| T |
9156784 |
cttaccaatggcaaccttggtgatgacctctcgtctatgacaccctccttccaatgttccatttccagagtgtccatcaggacagaaacattcatgagat |
9156883 |
T |
|
| Q |
405 |
ccatctgtgttgcgacaatgactttcatctatacatgtgttat |
447 |
Q |
| |
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| T |
9156884 |
ccatcagtattgcgacaatgatcttcatttatgcatgtgttat |
9156926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 305 - 446
Target Start/End: Original strand, 9171392 - 9171533
Alignment:
| Q |
305 |
cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgtatgat |
404 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||||| || | |
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| T |
9171392 |
cttaccaatggcaaccttggtaataacatctcgtctatgacaccctccttcctttgttccatttccagattgtccatcaggacagaaacattcatagaac |
9171491 |
T |
|
| Q |
405 |
ccatctgtgttgcgacaatgactttcatctatacatgtgtta |
446 |
Q |
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| T |
9171492 |
ccatccttgttgcgacaatgatcttcatttatgcatgtgtta |
9171533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 305 - 446
Target Start/End: Original strand, 9179374 - 9179515
Alignment:
| Q |
305 |
cttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaaaaacattcgtatgat |
404 |
Q |
| |
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||||||||||||||||||||||| || ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||||| |||||||| || | |
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| T |
9179374 |
cttaccaatggcaaccttggtaataacatctcgtctatgacaccctccttcctttgttccatttccagattgtccatcaggacagaaacattcatagaac |
9179473 |
T |
|
| Q |
405 |
ccatctgtgttgcgacaatgactttcatctatacatgtgtta |
446 |
Q |
| |
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| T |
9179474 |
ccatccttgttgcgacaatgatcttcatttatgcatgtgtta |
9179515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 290 - 447
Target Start/End: Original strand, 9201067 - 9201224
Alignment:
| Q |
290 |
ggctatgcttagtgacttaccaatggcaaccttggtaacaatatctcgtctatgacaacctccttccaatgttccatttccagagtgtccatcaggacaa |
389 |
Q |
| |
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|||||||||||| ||||||||| ||||||||||||| || |||| || |||||||||||||| |||| |||||||||||||| ||||||||||||||| |
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| T |
9201067 |
ggctatgcttaggttcttaccaattgcaaccttggtaataacatcttgtttatgacaacctcctgccaacgttccatttccagattgtccatcaggacaa |
9201166 |
T |
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| Q |
390 |
aaacattcgtatgatccatctgtgttgcgacaatgactttcatctatacatgtgttat |
447 |
Q |
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|||||||| | |||||||| || ||||||||||| ||||| ||| |||||||||| |
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| T |
9201167 |
aaacattcatgagatccatcagtattgcgacaatgtttttcacttatgcatgtgttat |
9201224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 112
Target Start/End: Original strand, 9162352 - 9162459
Alignment:
| Q |
5 |
tgaaaccgccacaaataggactattagtccagcacttgatcctgcatttcaattgtgttgtagcaagttaatgaattgttttataaattaatatcaatag |
104 |
Q |
| |
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| T |
9162352 |
tgaaatcgccacaaatagaataatgattccagcacttgctcctgcatttgaaatgtattgaagtcaattcataaattgttctataaaataatatcgatag |
9162451 |
T |
|
| Q |
105 |
ctaacatg |
112 |
Q |
| |
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|||||||| |
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| T |
9162452 |
ctaacatg |
9162459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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