View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7210_low_3 (Length: 292)
Name: NF7210_low_3
Description: NF7210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7210_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 39601285 - 39601019
Alignment:
| Q |
18 |
aaatgttcaacaccttcaccaactttgcttcactctcttcaattacctttggatctggagtgccgtcaactagtagtgaaggaaacaaaacatgacaggt |
117 |
Q |
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| T |
39601285 |
aaatgttgaacaccttcaccaactttgcttcactttcttcaattacctttggatctggagagctgccacctagtagtgtaggacacaaaacatgacaggt |
39601186 |
T |
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| Q |
118 |
caaattgtatgctgatgggtggaaattatgtgcttcaacttctaaccattgttccacaaggcccttttcttctattgtctttcctagtaactcaacccct |
217 |
Q |
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| T |
39601185 |
caaattgtatgctgatgggtggaaattatgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtctttcctagtaactcaacccct |
39601086 |
T |
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| Q |
218 |
tgagatctatatttttcagcatagtatctcattattgccctagattctgcacaaatagatgaaaaca |
284 |
Q |
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| T |
39601085 |
tgagatctatatttttcagcatagtatctcattattgccctagattctgcacaaatagatgaaaaca |
39601019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 18 - 284
Target Start/End: Complemental strand, 39612106 - 39611840
Alignment:
| Q |
18 |
aaatgttcaacaccttcaccaactttgcttcactctcttcaattacctttggatctggagtgccgtcaactagtagtgaaggaaacaaaacatgacaggt |
117 |
Q |
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| T |
39612106 |
aaatgttcaacaccttcaccaactttgcttcactctcttcaattacctttggatctggagtgccgtcaaccagtagtgaaggaaacaaaacatgaatgac |
39612007 |
T |
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| Q |
118 |
caaattgtatgctgatgggtggaaattatgtgcttcaacttctaaccattgttccacaaggcccttttcttctattgtctttcctagtaactcaacccct |
217 |
Q |
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| T |
39612006 |
caagttgtaagctggtgggttaaagttgtgtgcttcaacttctaaccattgttccacaagacccttttcttctattgtctttcctagcaactcaacccct |
39611907 |
T |
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| Q |
218 |
tgagatctatatttttcagcatagtatctcattattgccctagattctgcacaaatagatgaaaaca |
284 |
Q |
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| T |
39611906 |
tgagatctatatttttctgcataatatctcattattgccctagattctgcacaaatagatgaaaaca |
39611840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 31 - 154
Target Start/End: Complemental strand, 34774411 - 34774287
Alignment:
| Q |
31 |
cttcaccaactttgcttcactctcttcaattacctttggatctggagtgccgtcaactagtagtgaaggaaacaaaacatgacaggtc-aaattgtatgc |
129 |
Q |
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| T |
34774411 |
cttcaccaactttgcttcactctcttcaattaccttaggctctggattgccgccagctagtagtgaaggacgcaaaacatgataggtcaaaattgtatgc |
34774312 |
T |
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| Q |
130 |
tgatgggtggaaattatgtgcttca |
154 |
Q |
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| T |
34774311 |
tggtgggtggaagatatgtgcttca |
34774287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 133 - 268
Target Start/End: Complemental strand, 17647192 - 17647057
Alignment:
| Q |
133 |
tgggtggaaattatgtgcttcaacttctaaccattgttccacaaggcccttttcttctattgtctttcctagtaactcaaccccttgagatctatatttt |
232 |
Q |
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||||| ||| ||||||||||||||||||| |||||| |||||||| ||| ||||||||||||||||||| || || ||| ||||||| | | || ||| |
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| T |
17647192 |
tgggttgaagttatgtgcttcaacttctagccattgctccacaagacccctttcttctattgtctttccaagcaaatcagtcccttgatttttgtacttt |
17647093 |
T |
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| Q |
233 |
tcagcatagtatctcattattgccctagattctgca |
268 |
Q |
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| T |
17647092 |
tcagcatagtaccttaggattgccctagattctgca |
17647057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 203
Target Start/End: Original strand, 17572955 - 17573025
Alignment:
| Q |
133 |
tgggtggaaattatgtgcttcaacttctaaccattgttccacaaggcccttttcttctattgtctttccta |
203 |
Q |
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| T |
17572955 |
tgggtgaaagttatgtgcttccacttcaagccattgttccacaagacccctttcttctaccgtctttccta |
17573025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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