View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7210_low_5 (Length: 242)
Name: NF7210_low_5
Description: NF7210
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7210_low_5 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 7 - 242
Target Start/End: Original strand, 39600625 - 39600864
Alignment:
| Q |
7 |
tgagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtttagta |
106 |
Q |
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| T |
39600625 |
tgagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtttagta |
39600724 |
T |
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| Q |
107 |
ctatgctaaaag--gattca--aagtttattcattttctgactcatgaatgttttttgttcacaatctgcagccatttggaactgttcctgtaataaaag |
202 |
Q |
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| T |
39600725 |
ctatgctaaaagtttatttattttgattattcattttctgactcatgcatgttttttgttcataatctgcagccttttggaactgttcctgtaataaaag |
39600824 |
T |
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| Q |
203 |
atggagactataccctttatggttaagacatcttgacccc |
242 |
Q |
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| T |
39600825 |
atggagactataccctttatggttaaaacatcttgacccc |
39600864 |
T |
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Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 101
Target Start/End: Original strand, 39611066 - 39611160
Alignment:
| Q |
7 |
tgagaagaaaatcgaatttgaggttgtccctgttaatgtcttggagggtgaacacaaagatcctgagtacctcaaattacaggttcatctttgtt |
101 |
Q |
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| T |
39611066 |
tgagaaggaaatagaatttgaggttgtccctattaatgtcttgaagggtgaacacaaggatcctgagtacctcaaattacaggttcatgtttgtt |
39611160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 157 - 242
Target Start/End: Original strand, 39611215 - 39611299
Alignment:
| Q |
157 |
tttgttcacaatctgcagccatttggaactgttcctgtaataaaagatggagactataccctttatggttaagacatcttgacccc |
242 |
Q |
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| T |
39611215 |
tttgttcataatctgcagccatttggaaatgttcctgttattaaagatggagactataccctttatggttaa-acatcttgacccc |
39611299 |
T |
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