View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7212_high_3 (Length: 239)
Name: NF7212_high_3
Description: NF7212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7212_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 4e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 36464504 - 36464279
Alignment:
| Q |
1 |
atataaatttagccaacaaaaaatgagaattgaacatgtcatctttagcattatttaactaacttgagctttaaacatattttgtcactgaactttaagc |
100 |
Q |
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| T |
36464504 |
atataaatttaaccaacaaaaaatgagaattaaacatgtcatctttagcattatttaactaacttgagcttt---------ttgtcactgaactttaagc |
36464414 |
T |
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| Q |
101 |
agagcttagataacattgttatt-----------tgcttccaacaattttgaagaagaggcnnnnnnncttttcttcaggagactttgatttctaaacaa |
189 |
Q |
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| T |
36464413 |
agagcttagataacattgttattatgtatgtgtttgcttccaacaattttgaagaagaggctttttttcttttcttcaggagactttgatttctaaacaa |
36464314 |
T |
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| Q |
190 |
aacattcatgtaatgaacttttctaaccaaaaatt |
224 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
36464313 |
aacattcatgtaatgaacttttctaaccaaaaatt |
36464279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 115
Target Start/End: Complemental strand, 14703704 - 14703654
Alignment:
| Q |
65 |
tgagctttaaacatattttgtcactgaactttaagcagagcttagataaca |
115 |
Q |
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|||||||||| |||||||||||||| | ||||||||||||||| ||||||| |
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| T |
14703704 |
tgagctttaagcatattttgtcactaagctttaagcagagcttggataaca |
14703654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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