View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7212_low_2 (Length: 403)
Name: NF7212_low_2
Description: NF7212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7212_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 12455282 - 12454945
Alignment:
| Q |
1 |
tagtgcgctgtagtgtaatagcgtagcagtggtagggtttagcacggcacttttggcccacggtccgccttcagcaattgtggttatcttggattaacaa |
100 |
Q |
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| T |
12455282 |
tagtgcgctatagtgtaatagtatagcagtggtagggtttagcacggcacttttggcccacggtccgccttcagcaattgtggttatcttggattaacaa |
12455183 |
T |
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| Q |
101 |
catagccacgtgtcagattgtggaatagttttatgcctacgatgataatatgatatcgataatatgttccaaataaaactgtgtataatataaggaaaga |
200 |
Q |
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| T |
12455182 |
catagccacgtgtctgattgtggaatagttttatgcctacgatgatgatatgatatcaataatatcttccagataaaactgtgtataatataaggaaaga |
12455083 |
T |
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| Q |
201 |
cagaatttatgccttatccttttaaagaggttacctaaagttatgattttagccagatgataaacctaaggtttttacctccttcctcttttcttgctcc |
300 |
Q |
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| T |
12455082 |
cagaatttatgccttatccttttaaagaggttacctaaagttatgattttagccagatgataaacctaaggtttttacctccttcctcttttcttgctcc |
12454983 |
T |
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| Q |
301 |
tgtttttaaaaggaacacgcgtgcgcgcgcgcacacac |
338 |
Q |
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| T |
12454982 |
tgtttttaaaaggaacatgcgtgcgcgcgcgcacacac |
12454945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 100 - 163
Target Start/End: Complemental strand, 16660502 - 16660439
Alignment:
| Q |
100 |
acatagccacgtgtcagattgtggaatagttttatgcctacgatgataatatgatatcgataat |
163 |
Q |
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| T |
16660502 |
acatagccacgtgtctgattgtggaatagttttatgcctatgatgatgatatgatatcgataat |
16660439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 351 - 388
Target Start/End: Complemental strand, 12454947 - 12454910
Alignment:
| Q |
351 |
cacactcacttctatctctcaattatgttatgattctt |
388 |
Q |
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| T |
12454947 |
cacactcacttctatctctcaattatgttatgattctt |
12454910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 293 - 338
Target Start/End: Complemental strand, 16660429 - 16660384
Alignment:
| Q |
293 |
cttgctcctgtttttaaaaggaacacgcgtgcgcgcgcgcacacac |
338 |
Q |
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| T |
16660429 |
cttgctcctgtttttaaaaggaacacgcatgtgcgcgcacacacac |
16660384 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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