View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7212_low_4 (Length: 344)
Name: NF7212_low_4
Description: NF7212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7212_low_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 344
Target Start/End: Original strand, 41169527 - 41169866
Alignment:
| Q |
5 |
cagaacctgtggcagacagtgatggttgccaaagactaaaaagtaggacgaaaacag--ggcatcaaacaacagaactgtatatttttgaagcttaacag |
102 |
Q |
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| T |
41169527 |
cagaaactgtggcagacagtgatggttgccaaagactaaaaagtaggacgaaaacagatggcatcaaacaacagaactgtatatttttgaagcttaacgg |
41169626 |
T |
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| Q |
103 |
aagaataagaatgggattaggtcatggggagttgtactggcaatttccatgttgaaatcacatatttttcaacccccggaaaaagttgacttaaaggatt |
202 |
Q |
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| T |
41169627 |
aagaataagaatgggattaggtcatggggagttgtactggtgatttccatgttgaaatcacat--ttttcaacccccggaaaaagttgacttaaaggatt |
41169724 |
T |
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| Q |
203 |
tgttgcaaaaggaagggatggaagaaacattatattttactgataagaagttcttaagatataatacataccagatacaaagcattggcatttataattg |
302 |
Q |
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| T |
41169725 |
tgttgcaaaaggaagggatggaagaaacattatattttactgataagaagttcttaagatataatacatatcagatacaaaacattggcatttataattg |
41169824 |
T |
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| Q |
303 |
ttggaagttttccttaattgcaggccacttccagccgcctta |
344 |
Q |
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| T |
41169825 |
ttggaagttttccttaattgcaggcctcttccagccgcctta |
41169866 |
T |
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