View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7212_low_5 (Length: 319)

Name: NF7212_low_5
Description: NF7212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7212_low_5
NF7212_low_5
[»] chr8 (13 HSPs)
chr8 (1-137)||(17683697-17683833)
chr8 (1-137)||(17664541-17664677)
chr8 (1-118)||(39837482-39837599)
chr8 (1-107)||(4839713-4839819)
chr8 (1-108)||(17973593-17973700)
chr8 (2-108)||(25579742-25579848)
chr8 (1-102)||(39845541-39845642)
chr8 (1-118)||(30938310-30938427)
chr8 (1-118)||(1406993-1407110)
chr8 (1-101)||(26873541-26873641)
chr8 (1-101)||(26875991-26876091)
chr8 (234-285)||(17664393-17664444)
chr8 (234-285)||(17683549-17683600)
[»] chr2 (21 HSPs)
chr2 (1-137)||(20372214-20372350)
chr2 (1-137)||(20621546-20621682)
chr2 (1-118)||(35037884-35038001)
chr2 (1-118)||(14582953-14583070)
chr2 (1-118)||(15944477-15944594)
chr2 (1-118)||(15952992-15953109)
chr2 (1-118)||(35138621-35138738)
chr2 (1-118)||(35146957-35147074)
chr2 (1-118)||(38168277-38168394)
chr2 (1-118)||(41233764-41233881)
chr2 (1-118)||(42565849-42565966)
chr2 (1-118)||(42574473-42574590)
chr2 (2-82)||(44372734-44372814)
chr2 (2-82)||(44388645-44388725)
chr2 (234-285)||(20621788-20621839)
chr2 (1-67)||(17687369-17687435)
chr2 (15-84)||(25483643-25483712)
chr2 (15-84)||(25491249-25491318)
chr2 (16-98)||(35303780-35303862)
chr2 (22-99)||(18989312-18989389)
chr2 (15-67)||(27606616-27606667)
[»] chr5 (19 HSPs)
chr5 (1-119)||(29186197-29186315)
chr5 (1-108)||(20372843-20372950)
chr5 (1-108)||(20398565-20398672)
chr5 (1-118)||(1728079-1728196)
chr5 (1-118)||(43597966-43598083)
chr5 (1-118)||(43603458-43603575)
chr5 (1-118)||(43608950-43609067)
chr5 (15-108)||(23350006-23350099)
chr5 (1-118)||(24956766-24956883)
chr5 (1-118)||(24965229-24965346)
chr5 (1-118)||(28843968-28844085)
chr5 (1-118)||(28852578-28852695)
chr5 (15-105)||(31410932-31411022)
chr5 (1-100)||(31421817-31421916)
chr5 (15-84)||(19223597-19223666)
chr5 (52-98)||(17638318-17638364)
chr5 (52-98)||(23028007-23028053)
chr5 (51-97)||(23037923-23037969)
chr5 (239-285)||(19223811-19223857)
[»] scaffold0156 (1 HSPs)
scaffold0156 (1-108)||(35286-35393)
[»] chr4 (13 HSPs)
chr4 (15-118)||(27343611-27343714)
chr4 (15-118)||(4523600-4523703)
chr4 (1-118)||(12996504-12996621)
chr4 (1-108)||(8094212-8094319)
chr4 (1-108)||(8103018-8103125)
chr4 (1-119)||(21532224-21532341)
chr4 (1-101)||(52295632-52295732)
chr4 (15-98)||(12428418-12428501)
chr4 (16-99)||(33188808-33188891)
chr4 (73-118)||(10638406-10638451)
chr4 (28-67)||(12402907-12402946)
chr4 (45-98)||(3424403-3424454)
chr4 (52-97)||(25249599-25249644)
[»] chr7 (9 HSPs)
chr7 (1-118)||(10439965-10440082)
chr7 (1-118)||(13831528-13831645)
chr7 (15-118)||(13839573-13839676)
chr7 (1-118)||(18304312-18304429)
chr7 (2-118)||(4952317-4952433)
chr7 (1-118)||(12978483-12978600)
chr7 (15-98)||(21662962-21663046)
chr7 (15-67)||(30244817-30244869)
chr7 (44-99)||(1955691-1955746)
[»] chr3 (19 HSPs)
chr3 (1-118)||(8154564-8154681)
chr3 (1-118)||(50824380-50824497)
chr3 (1-118)||(50851363-50851480)
chr3 (1-118)||(41006584-41006701)
chr3 (1-118)||(41015364-41015481)
chr3 (15-108)||(14538534-14538628)
chr3 (1-118)||(2211267-2211384)
chr3 (15-118)||(27341254-27341358)
chr3 (1-119)||(28470137-28470254)
chr3 (1-108)||(9525364-9525471)
chr3 (1-108)||(9555038-9555145)
chr3 (15-98)||(17933697-17933780)
chr3 (16-99)||(43470492-43470575)
chr3 (15-98)||(16816145-16816227)
chr3 (15-98)||(17919241-17919324)
chr3 (15-67)||(21186789-21186841)
chr3 (52-99)||(31276593-31276640)
chr3 (58-99)||(16288692-16288733)
chr3 (15-67)||(18349598-18349650)
[»] chr1 (13 HSPs)
chr1 (1-118)||(3432810-3432927)
chr1 (15-108)||(32137684-32137777)
chr1 (1-118)||(31539982-31540099)
chr1 (1-118)||(31548551-31548668)
chr1 (1-118)||(35103984-35104101)
chr1 (15-108)||(41746622-41746716)
chr1 (46-98)||(28457629-28457681)
chr1 (15-98)||(29221429-29221511)
chr1 (15-97)||(51058330-51058411)
chr1 (15-98)||(44320132-44320215)
chr1 (45-98)||(8241438-8241491)
chr1 (52-96)||(13462775-13462819)
chr1 (52-97)||(22460026-22460071)
[»] chr6 (14 HSPs)
chr6 (1-108)||(33298113-33298219)
chr6 (1-102)||(15391547-15391648)
chr6 (1-108)||(13825731-13825838)
chr6 (1-118)||(5004089-5004206)
chr6 (1-108)||(30824459-30824566)
chr6 (1-118)||(11279865-11279982)
chr6 (1-118)||(25991878-25991995)
chr6 (1-118)||(35091596-35091713)
chr6 (1-108)||(25550323-25550430)
chr6 (1-118)||(25506461-25506578)
chr6 (1-101)||(5994727-5994827)
chr6 (1-118)||(23925363-23925481)
chr6 (32-109)||(26526631-26526708)
chr6 (40-99)||(14894939-14894998)
[»] scaffold0111 (1 HSPs)
scaffold0111 (1-118)||(33063-33180)
[»] scaffold0209 (1 HSPs)
scaffold0209 (1-118)||(4-121)
[»] scaffold0083 (1 HSPs)
scaffold0083 (15-101)||(15855-15941)
[»] scaffold0632 (1 HSPs)
scaffold0632 (1-101)||(4418-4518)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-108)||(121256-121363)
[»] scaffold0497 (1 HSPs)
scaffold0497 (1-99)||(11021-11119)
[»] scaffold0173 (1 HSPs)
scaffold0173 (1-108)||(859-966)
[»] scaffold0016 (1 HSPs)
scaffold0016 (1-108)||(23492-23600)
[»] scaffold0431 (1 HSPs)
scaffold0431 (15-98)||(181-264)
[»] scaffold0039 (1 HSPs)
scaffold0039 (15-84)||(40787-40856)
[»] scaffold0222 (1 HSPs)
scaffold0222 (15-98)||(20422-20505)
[»] scaffold0027 (2 HSPs)
scaffold0027 (41-119)||(65622-65701)
scaffold0027 (245-285)||(65470-65510)
[»] scaffold0315 (1 HSPs)
scaffold0315 (43-99)||(10595-10651)
[»] scaffold0170 (1 HSPs)
scaffold0170 (15-99)||(7129-7213)
[»] scaffold0290 (1 HSPs)
scaffold0290 (22-99)||(15760-15837)
[»] scaffold0048 (1 HSPs)
scaffold0048 (73-106)||(7587-7620)
[»] scaffold0007 (1 HSPs)
scaffold0007 (52-99)||(61371-61418)
[»] scaffold1380 (1 HSPs)
scaffold1380 (58-99)||(556-597)


Alignment Details
Target: chr8 (Bit Score: 109; Significance: 8e-55; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 8e-55
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17683833 - 17683697
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  17683833 ctctatccttgcccattttattcgtatttttagagtcgggaattttcgtcgtttcagacgaaattttgacaaagaagttactttgaagtacctcattttt 17683734  T
Q  101 tattccgaatcagacccttctctttcccattattttc 137  Q
    |||||||| || |||||||||||||||||||||||||    
T  17683733 tattccgagtcggacccttctctttcccattattttc 17683697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 17664677 - 17664541
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||| ||||||||||||||||||||||||    
T  17664677 ctctatccttgcccattttattcgtatttttagagtcgggaattttcatcgtttcagacgaaattttgacaaagaagttactttgaagtacctcattttt 17664578  T
Q  101 tattccgaatcagacccttctctttcccattattttc 137  Q
    |||||||| || |||||||||||||||||||||||||    
T  17664577 tattccgagtcggacccttctctttcccattattttc 17664541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 39837599 - 39837482
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  39837599 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttt 39837500  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  39837499 tattccgagtcggaccct 39837482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 4839819 - 4839713
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  4839819 ctctattcttacctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaagttactttgaagtacctcattttt 4839720  T
Q  101 tattccg 107  Q
     ||||||    
T  4839719 gattccg 4839713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 17973593 - 17973700
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  17973593 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttt 17973692  T
Q  101 tattccga 108  Q
    ||||||||    
T  17973693 tattccga 17973700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 2 - 108
Target Start/End: Complemental strand, 25579848 - 25579742
Alignment:
Q  2 tctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttttt 101  Q
    ||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  25579848 tctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttt 25579749  T
Q  102 attccga 108  Q
    |||||||    
T  25579748 attccga 25579742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 39845642 - 39845541
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  39845642 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttt 39845543  T
Q  101 ta 102  Q
    ||    
T  39845542 ta 39845541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 30938310 - 30938427
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  30938310 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 30938409  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  30938410 gattccgagtcggaccct 30938427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 1407110 - 1406993
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  1407110 ctctattcttacccattttattcgtatttttaaagttgtgaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 1407011  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  1407010 tattccgagtcggaccct 1406993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26873641 - 26873541
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||| ||| ||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||    
T  26873641 ctctattcttacccattttattcgtatttgtaatgtcggaaattttcgtcgtttcagacgaaatttcgacaaagaggttactttaaagtaccttattttt 26873542  T
Q  101 t 101  Q
    |    
T  26873541 t 26873541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 26876091 - 26875991
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||| ||||| |||||| |||||||||||||||||||| |||||||||||||||| || ||||||||||||    
T  26876091 ctctattcttacccattttattcgtatttttaatgtcggaaatttttgtcgtttcagacgaaatttcgacaaagaggttactttaaaatacctcattttt 26875992  T
Q  101 t 101  Q
    |    
T  26875991 t 26875991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 17664444 - 17664393
Alignment:
Q  234 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 285  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17664444 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17664393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 285
Target Start/End: Complemental strand, 17683600 - 17683549
Alignment:
Q  234 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 285  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  17683600 ctgtacaatgttgtcaataagtccgaaggttttctgcagtggtccaaatttc 17683549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 1e-50; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 20372350 - 20372214
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctca-tttt 99  Q
    ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||    
T  20372350 ctctatccttgcccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgacaaa-aggttactttgaagtacctcattttt 20372252  T
Q  100 ttattccgaatcagacccttctctttcccattattttc 137  Q
    ||||||||| || |||||||||||||||||||||||||    
T  20372251 ttattccgagtcggacccttctctttcccattattttc 20372214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 20621546 - 20621682
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  20621546 ctctattcttacccattttattcgtgtttttgaagtcgggaattttcgtcgtttcagacaaaatttcgacaaagatgttactttgaagtacctcattttt 20621645  T
Q  101 tattccgaatcagacccttctctttcccattattttc 137  Q
    ||||| || ||||||||||||||||||||||||||||    
T  20621646 tattctgagtcagacccttctctttcccattattttc 20621682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 35037884 - 35038001
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||||||    
T  35037884 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgatagagaggttactttgaaatacctcattttt 35037983  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| |||| ||||    
T  35037984 tattccgagtcaggccct 35038001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 14582953 - 14583070
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  14582953 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 14583052  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  14583053 gattccgagtcggaccct 14583070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15944594 - 15944477
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  15944594 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 15944495  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  15944494 gattccgagtcggaccct 15944477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 15953109 - 15952992
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  15953109 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 15953010  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  15953009 gattccgagtcggaccct 15952992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 35138621 - 35138738
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  35138621 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 35138720  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  35138721 gattccgagtcggaccct 35138738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 35146957 - 35147074
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  35146957 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 35147056  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  35147057 gattccgagtcggaccct 35147074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 38168394 - 38168277
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  38168394 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 38168295  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  38168294 gattccgagtcggaccct 38168277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 41233881 - 41233764
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  41233881 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 41233782  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  41233781 gattccgagtcggaccct 41233764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42565966 - 42565849
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  42565966 ctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 42565867  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  42565866 tattccgagtcggaccct 42565849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 42574590 - 42574473
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  42574590 ctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 42574491  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  42574490 tattccgagtcggaccct 42574473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 44372734 - 44372814
Alignment:
Q  2 tctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttact 82  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  44372734 tctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaaagaggttact 44372814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 44388645 - 44388725
Alignment:
Q  2 tctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttact 82  Q
    |||||| || || |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  44388645 tctatctttacccattttattcgtatttttaaagtcgggaattttcgtcgtttaagacgaaatttcgacaaagaggttact 44388725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 20621788 - 20621839
Alignment:
Q  234 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20621788 ctgtacaatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 20621839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17687435 - 17687369
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 67  Q
    |||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  17687435 ctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 17687369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 25483643 - 25483712
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttacttt 84  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||    
T  25483643 attttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacagagaggttacttt 25483712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 25491249 - 25491318
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttacttt 84  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||||| || ||| ||||||||||||    
T  25491249 attttatttgtatttttaaagtcgagaattttcgtcgtttcagacgaaatctcgacagagaggttacttt 25491318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 35303780 - 35303862
Alignment:
Q  16 ttttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    |||||||| |||||| |||| |  ||| ||||||||||||||||||||||||  || |||||||| |||||||||||||||||    
T  35303780 ttttattcttattttaaaagccaagaaatttcgtcgtttcagacgaaatttcggcagagaggttaatttgaagtacctcattt 35303862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 18989389 - 18989312
Alignment:
Q  22 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||| ||||||||| |||||||||| ||||  |||||||||||| |   | |||||||||||| ||||||||||||||    
T  18989389 tcgtctttttaaagccgggaatttttgtcgcatcagacgaaattacggtagagaggttactttcaagtacctcatttt 18989312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Complemental strand, 27606667 - 27606616
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 67  Q
    |||||||||||| |||||||| |||||||||| ||||| ||||||||||||||    
T  27606667 attttattcgtacttttaaagacgggaatttt-gtcgtctcagacgaaatttc 27606616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 95; Significance: 2e-46; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 29186315 - 29186197
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||    
T  29186315 ctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtgcctcattttt 29186216  T
Q  101 tattccgaatcagaccctt 119  Q
    |||||||| || |||||||    
T  29186215 tattccgagtcggaccctt 29186197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 20372950 - 20372843
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  20372950 ctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttt 20372851  T
Q  101 tattccga 108  Q
    ||||||||    
T  20372850 tattccga 20372843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 20398672 - 20398565
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  20398672 ctctattcttaccgattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttt 20398573  T
Q  101 tattccga 108  Q
    ||||||||    
T  20398572 tattccga 20398565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 1728196 - 1728079
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  1728196 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttt 1728097  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  1728096 tattccgagtcggaccct 1728079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 43598083 - 43597966
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  43598083 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 43597984  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  43597983 tattccgagtcggaccct 43597966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 43603575 - 43603458
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  43603575 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 43603476  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  43603475 tattccgagtcggaccct 43603458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 43609067 - 43608950
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  43609067 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 43608968  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  43608967 tattccgagtcggaccct 43608950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 23350099 - 23350006
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccga 108  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  23350099 attttattcgtatttttaaagtcgggaattctcgtcatttcagacgaaatttcggcaaagaggttactttgaagtacctcattttttattccga 23350006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 24956883 - 24956766
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  24956883 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 24956784  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  24956783 gattccgagtcggaccct 24956766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 24965346 - 24965229
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  24965346 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 24965247  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  24965246 gattccgagtcggaccct 24965229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28843968 - 28844085
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  28843968 ctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 28844067  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  28844068 tattccgagtcggaccct 28844085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 28852578 - 28852695
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  28852578 ctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 28852677  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  28852678 tattccgagtcggaccct 28852695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 105
Target Start/End: Original strand, 31410932 - 31411022
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattc 105  Q
    ||||||||||||||||||||||  |||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||||    
T  31410932 attttattcgtatttttaaagttaggaattttcgtcgtttaaaacgaaatttcgacaaagaggttactttgaagtacctcattttttattc 31411022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 31421817 - 31421916
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||| ||||||| ||||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||    
T  31421817 ctctattcttacccattttattcgtatttttgaagtcggaaattttcgtcgtttcagacaaaatttcgacaaagatgttactttgaagtacctcattttt 31421916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 15 - 84
Target Start/End: Original strand, 19223597 - 19223666
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttacttt 84  Q
    |||||||| ||||||||||||||| ||||| ||||||||||||| ||||| || ||| ||||||||||||    
T  19223597 attttatttgtatttttaaagtcgagaattgtcgtcgtttcagatgaaatctcgacagagaggttacttt 19223666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Original strand, 17638318 - 17638364
Alignment:
Q  52 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  17638318 tttcaaacgaaatttcgacagagaggttactttgaagtacctcattt 17638364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 98
Target Start/End: Complemental strand, 23028053 - 23028007
Alignment:
Q  52 tttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||  || ||||||||||||||||||||||||||    
T  23028053 tttcagacgaaatttcggcagagaggttactttgaagtacctcattt 23028007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 97
Target Start/End: Original strand, 23037923 - 23037969
Alignment:
Q  51 gtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 97  Q
    |||||||||||||||||  || |||||||||||||||||||||||||    
T  23037923 gtttcagacgaaatttcggcagagaggttactttgaagtacctcatt 23037969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 285
Target Start/End: Original strand, 19223811 - 19223857
Alignment:
Q  239 caatgttgtcaataagtccgaaggttttcggcagtggtccaaatttc 285  Q
    |||||||||||||||||||||| |||||| |||  ||||||||||||    
T  19223811 caatgttgtcaataagtccgaaagttttcagcaagggtccaaatttc 19223857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0156 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 35393 - 35286
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  35393 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctcattttt 35294  T
Q  101 tattccga 108  Q
    ||||||||    
T  35293 tattccga 35286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 27343714 - 27343611
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccgaatcaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| || ||    
T  27343714 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacagagaggttactttgaagtacctcattttttattccgagtcgga 27343615  T
Q  115 ccct 118  Q
    ||||    
T  27343614 ccct 27343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 4523703 - 4523600
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccgaatcaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| || ||    
T  4523703 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagtcgga 4523604  T
Q  115 ccct 118  Q
    ||||    
T  4523603 ccct 4523600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 12996504 - 12996621
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||   | ||||||||||||||||||||||||||||    
T  12996504 ctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggtagagaggttactttgaagtacctcattttt 12996603  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| |||| ||||    
T  12996604 tattccgagtcagtccct 12996621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8094319 - 8094212
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  8094319 ctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 8094220  T
Q  101 tattccga 108  Q
     |||||||    
T  8094219 gattccga 8094212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 8103125 - 8103018
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  8103125 ctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 8103026  T
Q  101 tattccga 108  Q
     |||||||    
T  8103025 gattccga 8103018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 21532341 - 21532224
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    ||||||||||  | ||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| || |||||||||||||||||||||||    
T  21532341 ctctatccttatccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcgacaaa-agattactttgaagtacctcattttt 21532243  T
Q  101 tattccgaatcagaccctt 119  Q
    ||||| || || |||||||    
T  21532242 tattctgagtcggaccctt 21532224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 52295632 - 52295732
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||  || |||| |||||||||||||||||||||||    
T  52295632 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcagagagattactttgaagtacctcattttt 52295731  T
Q  101 t 101  Q
    |    
T  52295732 t 52295732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 12428501 - 12428418
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || ||||| |||||||||||||||||||||    
T  12428501 attttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacgaagagtttactttgaagtacctcattt 12428418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 33188808 - 33188891
Alignment:
Q  16 ttttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    ||||||| ||||||||||||  | ||||||||||||||||||||||||||||| |||  ||||||||||||| |||||||||||    
T  33188808 ttttatttgtatttttaaagctgagaattttcgtcgtttcagacgaaatttcagcaagaaggttactttgaattacctcatttt 33188891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 118
Target Start/End: Original strand, 10638406 - 10638451
Alignment:
Q  73 agaggttactttgaagtacctcattttttattccgaatcagaccct 118  Q
    |||||||||||||||||||||||||||||||||||| || ||||||    
T  10638406 agaggttactttgaagtacctcattttttattccgagtcggaccct 10638451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 12402907 - 12402946
Alignment:
Q  28 ttttaaagtcgggaattttcgtcgtttcagacgaaatttc 67  Q
    |||||||||| |||||||||||||||||||||||||||||    
T  12402907 ttttaaagtcaggaattttcgtcgtttcagacgaaatttc 12402946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 3424403 - 3424454
Alignment:
Q  45 ttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||| |||||||||||||  ||  |||||||||||||||||||||||||    
T  3424403 ttcgtcgttccagacgaaatttcggca--gaggttactttgaagtacctcattt 3424454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Complemental strand, 25249644 - 25249599
Alignment:
Q  52 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 97  Q
    ||||| ||||||||||||||  |||||||||||| |||||||||||    
T  25249644 tttcaaacgaaatttcaacagggaggttactttggagtacctcatt 25249599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 2e-43; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 10439965 - 10440082
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||| |||||||||||||||    
T  10439965 ctctattcttgcccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcagagaggttactttaaagtacctcattttt 10440064  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| |||||||||    
T  10440065 tattccgagtcagaccct 10440082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 13831528 - 13831645
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  13831528 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttt 13831627  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  13831628 tattccgagtcggaccct 13831645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 13839573 - 13839676
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccgaatcaga 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||| || ||    
T  13839573 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttttattccgagtcgga 13839672  T
Q  115 ccct 118  Q
    ||||    
T  13839673 ccct 13839676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 18304429 - 18304312
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  18304429 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 18304330  T
Q  101 tattccgaatcagaccct 118  Q
    |||| ||| || ||||||    
T  18304329 tatttcgagtcggaccct 18304312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 2 - 118
Target Start/End: Complemental strand, 4952433 - 4952317
Alignment:
Q  2 tctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttttt 101  Q
    ||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||    
T  4952433 tctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcatttttt 4952334  T
Q  102 attccgaatcagaccct 118  Q
    ||||||| || ||||||    
T  4952333 attccgagtcggaccct 4952317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 12978483 - 12978600
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  12978483 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 12978582  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  12978583 gattccgagtcggaccct 12978600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 21663046 - 21662962
Alignment:
Q  15 attttattcgtattttt-aaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||| |||| || || | |||||||||| ||||||||||||||||  |||||||||||||||||||||||||    
T  21663046 attttattcgtattttttaaagccgagagtcttcgtcgttttagacgaaatttcaacagggaggttactttgaagtacctcattt 21662962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 30244817 - 30244869
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 67  Q
    ||||||||||||||||||||||| ||||||||||| ||||||| || ||||||    
T  30244817 attttattcgtatttttaaagtcaggaattttcgttgtttcagtcgtaatttc 30244869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 44 - 99
Target Start/End: Complemental strand, 1955746 - 1955691
Alignment:
Q  44 tttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||||||||||||||| |||||||  || |||||||||||||||| ||||||||||    
T  1955746 tttcgtcgtttcagacaaaatttcggcagagaggttactttgaagcacctcatttt 1955691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 90; Significance: 2e-43; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 8154681 - 8154564
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  8154681 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttt 8154582  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  8154581 tattccgagtcggaccct 8154564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 50824380 - 50824497
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  50824380 ctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttt 50824479  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  50824480 tattccgagtcggaccct 50824497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 50851480 - 50851363
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||||||||||||||||||||    
T  50851480 ctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcattttt 50851381  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  50851380 tattccgagtcggaccct 50851363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 41006584 - 41006701
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  41006584 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 41006683  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  41006684 gattccgagtcggaccct 41006701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 41015364 - 41015481
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  41015364 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 41015463  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  41015464 gattccgagtcggaccct 41015481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 14538628 - 14538534
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-aaagaggttactttgaagtacctcattttttattccga 108  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||||||||||||||||||||||||||||    
T  14538628 attttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaaaagaggttactttgaagtacctcattttttattccga 14538534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 2211267 - 2211384
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||  |||||||| || ||| || ||||||||||||    
T  2211267 ctctattcttacctattttattcgtatttttaaagtcaggaattttcgtcgtttaagacgaaatttcggcaaagagggtattttaaaatacctcattttt 2211366  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| |||| ||||    
T  2211367 tattccgagtcaggccct 2211384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 27341358 - 27341254
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt-ttttattccgaatcag 113  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||  || | ||||||||||||||||||||||| ||||||||||| ||||    
T  27341358 attttattcatatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcagaaaggttactttgaagtacctcatttttttattccgagtcag 27341259  T
Q  114 accct 118  Q
     ||||    
T  27341258 gccct 27341254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 28470254 - 28470137
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    ||||||||||  | ||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||||| || ||||| |||||||||||||||||    
T  28470254 ctctatccttatccattttattcgtatttttaaagtcagaaattttcgtcgtttcagacgaaatttcgacaaa-agattactatgaagtacctcattttt 28470156  T
Q  101 tattccgaatcagaccctt 119  Q
    ||||| || || |||||||    
T  28470155 tattctgagtcggaccctt 28470137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9525471 - 9525364
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||| |||| ||||||||||||  || | |||||||||| || ||||||||||||    
T  9525471 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcagaaaggttactttaaaatacctcattttt 9525372  T
Q  101 tattccga 108  Q
    ||||||||    
T  9525371 tattccga 9525364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 9555145 - 9555038
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||| |||||||||||||||||||||||||||| |||| ||||||||||||  || | |||||||||| || ||||||||||||    
T  9555145 ctctattcttacccattttactcgtatttttaaagtcgggaattttcgttgttttagacgaaatttcggcagaaaggttactttaaaatacctcattttt 9555046  T
Q  101 tattccga 108  Q
    ||||||||    
T  9555045 tattccga 9555038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 17933697 - 17933780
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||||||||||| |||||||||  ||||||||||||||||  |  ||||||||||||||||||||||||||    
T  17933697 attttattcgtatttttaaagtcggaaattttcgttatttcagacgaaatttcttcggagaggttactttgaagtacctcattt 17933780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 99
Target Start/End: Complemental strand, 43470575 - 43470492
Alignment:
Q  16 ttttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||||||||||||||||||| || |||||||  |||||||||||||||||||  || |||||||||||||||||||||||||||    
T  43470575 ttttattcgtatttttaaagccgagaattttattcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttt 43470492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 16816227 - 16816145
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||||||| ||| |||||||||  |||||||||||||||  ||  ||||| ||||||||||||||||||||    
T  16816227 attttattcgtatttttaaagccggaaattttcgttatttcagacgaaattttgacggagagg-tactttgaagtacctcattt 16816145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 17919241 - 17919324
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||||||| ||  |||||||||  ||||||||||||||||  |  |||||||||||| |||||||||||||    
T  17919241 attttattcgtatttttaaagccgaaaattttcgttatttcagacgaaatttcgtcggagaggttactttaaagtacctcattt 17919324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 21186789 - 21186841
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 67  Q
    |||||||||||| |||||||| || |||||||||| |||||| ||||||||||    
T  21186789 attttattcgtacttttaaagccgagaattttcgttgtttcaaacgaaatttc 21186841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 31276593 - 31276640
Alignment:
Q  52 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    ||||| |||||||||| ||||  |||||||||||||||||||||||||    
T  31276593 tttcaaacgaaatttcgacaagaaggttactttgaagtacctcatttt 31276640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 16288692 - 16288733
Alignment:
Q  58 acgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    ||||||||||  || |||||||||||||||||||||||||||    
T  16288692 acgaaatttcggcagagaggttactttgaagtacctcatttt 16288733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 18349598 - 18349650
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttc 67  Q
    |||||||||||| ||||||| |||| ||| | |||||||| ||||||||||||    
T  18349598 attttattcgtacttttaaaatcggaaatgtccgtcgttttagacgaaatttc 18349650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 3432927 - 3432810
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  3432927 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttgacaaagaggttactttgaagtacctcattttt 3432828  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  3432827 tattccgagtcggaccct 3432810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 32137777 - 32137684
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||    
T  32137777 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaataagttactttgaagtacctcattttttattccga 32137684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 31539982 - 31540099
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  31539982 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 31540081  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  31540082 gattccgagtcggaccct 31540099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 31548551 - 31548668
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  31548551 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 31548650  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  31548651 gattccgagtcggaccct 31548668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 35104101 - 35103984
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  35104101 ctctattcttacccattttattcgtatttttaaagttgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 35104002  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  35104001 gattccgagtcggaccct 35103984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 41746716 - 41746622
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaac-aaagaggttactttgaagtacctcattttttattccga 108  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| |||||||  | ||||||||||||||||||||||||||||||||||||||    
T  41746716 attttattcatatttttaaagtcgggaattttcgtcgtttcagacaaaatttcggcaaaagaggttactttgaagtacctcattttttattccga 41746622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 46 - 98
Target Start/End: Original strand, 28457629 - 28457681
Alignment:
Q  46 tcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    |||||||||||||||||||||| ||| ||||||||||||||||||| ||||||    
T  28457629 tcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacatcattt 28457681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 29221511 - 29221429
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||||||||||| ||||||||   ||||||||||||||||  || ||||| || |||||| ||||||||||    
T  29221511 attttattcgtatttttaaagtcggaaattttcgctatttcagacgaaatttcggcagagagg-tattttgaaatacctcattt 29221429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 15 - 97
Target Start/End: Complemental strand, 51058411 - 51058330
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 97  Q
    |||||||||||||||||||||  |||||||||||| |||||| ||||||||||| || | ||| || |||||| |||||||||    
T  51058411 attttattcgtatttttaaagctgggaattttcgttgtttcaaacgaaatttcagcagaaagg-tattttgaaatacctcatt 51058330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 44320215 - 44320132
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    |||||||||||||||| || | || |||   ||||||||||||||||||||||| ||  ||||||||||  |||||||||||||    
T  44320215 attttattcgtattttaaacgccgagaaggatcgtcgtttcagacgaaatttcagcagggaggttacttgaaagtacctcattt 44320132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 8241491 - 8241438
Alignment:
Q  45 ttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    |||||||||||||||||||||||   | |||||||||||| |||||||||||||    
T  8241491 ttcgtcgtttcagacgaaatttcggtagagaggttactttaaagtacctcattt 8241438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 96
Target Start/End: Original strand, 13462775 - 13462819
Alignment:
Q  52 tttcagacgaaatttcaacaaagaggttactttgaagtacctcat 96  Q
    |||||||||||||||  | ||||||||||||||||||||||||||    
T  13462775 tttcagacgaaatttggataaagaggttactttgaagtacctcat 13462819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 22460026 - 22460071
Alignment:
Q  52 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatt 97  Q
    ||||| |||||||||| ||| ||||||||||||| |||||||||||    
T  22460026 tttcaaacgaaatttcgacagagaggttactttggagtacctcatt 22460071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33298113 - 33298219
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||    
T  33298113 ctctatccttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcgacaaaga-gttactttgaagtacctcattttt 33298211  T
Q  101 tattccga 108  Q
    ||||||||    
T  33298212 tattccga 33298219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 15391648 - 15391547
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    ||||||||||||| ||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15391648 ctctatccttgcccattttattcgtatttttaaagccaggaattttcgtcgtttcagacgaaatttcgacaaagaggttactttgaagtacctcattttt 15391549  T
Q  101 ta 102  Q
    ||    
T  15391548 ta 15391547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 13825731 - 13825838
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  13825731 ctctattcttacccattttattcgtatttttaaagtcaggaattttcgtcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttt 13825830  T
Q  101 tattccga 108  Q
     |||||||    
T  13825831 gattccga 13825838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 5004089 - 5004206
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  5004089 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 5004188  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| || ||||||    
T  5004189 gattccgagtcggaccct 5004206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 30824566 - 30824459
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||| |||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  30824566 ctctattcttacccattttatttgtatttttaaagtcgggaattttcgtcgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 30824467  T
Q  101 tattccga 108  Q
     |||||||    
T  30824466 gattccga 30824459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 11279865 - 11279982
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  11279865 ctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 11279964  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  11279965 tattccgagtcggaccct 11279982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 25991878 - 25991995
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||   | ||||||||||||||||||||||||||||    
T  25991878 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagaagaaatttcggtagagaggttactttgaagtacctcattttt 25991977  T
Q  101 tattccgaatcagaccct 118  Q
    ||||| || || ||||||    
T  25991978 tattcagagtcggaccct 25991995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 35091713 - 35091596
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||| ||||||||||||||| ||||||||||||||||||||||||||   ||| |||||||||||||||||||||||||||    
T  35091713 ctctattcttacccattttattcatatttttaaagtcggaaattttcgtcgtttcagacgaaattttggcaaggaggttactttgaagtacctcattttt 35091614  T
Q  101 tattccgaatcagaccct 118  Q
    |||| |||||| ||||||    
T  35091613 tatttcgaatcggaccct 35091596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 25550323 - 25550430
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||| |||||||||||||||||||||||||||||||| |||||||||   || ||||||||||||||||||||||||||||    
T  25550323 ctctattcttacccattttattcatatttttaaagtcgggaattttcgtcgtttcaaacgaaattttggcagagaggttactttgaagtacctcattttt 25550422  T
Q  101 tattccga 108  Q
    ||||||||    
T  25550423 tattccga 25550430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 25506578 - 25506461
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||| ||||||||||||  || |||||||||||| || ||||||||||||    
T  25506578 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgttttagacgaaatttcggcagagaggttactttaaaatacctcattttt 25506479  T
Q  101 tattccgaatcagaccct 118  Q
     ||||||| |||| ||||    
T  25506478 gattccgagtcaggccct 25506461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5994727 - 5994827
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||| ||||||||||||||||||| ||||||   |||||||||||||||||||||||||||||||    
T  5994727 ctctattcttacccattttattcgtatttttaaagtcggaaattttcgtcgtttcagacaaaattttggcaaagaggttactttgaagtacctcattttt 5994826  T
Q  101 t 101  Q
    |    
T  5994827 t 5994827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 23925363 - 23925481
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||||||||||||||||||||||||||| || |||  |||||||||||   | ||| ||||||||||||||||||||||||    
T  23925363 ctctattcttacccattttattcgtatttttaaagtcgggaattttcatcatttttgacgaaatttcggtagagatgttactttgaagtacctcattttt 23925462  T
Q  101 t-attccgaatcagaccct 118  Q
    | ||||||| |||| ||||    
T  23925463 tgattccgagtcaggccct 23925481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 32 - 109
Target Start/End: Complemental strand, 26526708 - 26526631
Alignment:
Q  32 aaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttttattccgaa 109  Q
    ||||||||||||||||||||||||||||||||| ||  || || |||||||||||| ||||||||||||  |||||||    
T  26526708 aaagtcgggaattttcgtcgtttcagacgaaatatcggcagagtggttactttgaattacctcatttttggttccgaa 26526631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 40 - 99
Target Start/End: Original strand, 14894939 - 14894998
Alignment:
Q  40 gaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    ||||||| |||| ||||||||| |||||  ||||||  ||||||||||||||||||||||    
T  14894939 gaatttttgtcgcttcagacgatatttcggcaaagaaattactttgaagtacctcatttt 14894998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0111 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 33063 - 33180
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||| |||||||||||||||    
T  33063 ctctattcttacccattttatacgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggcaaagaggttactttaaagtacctcattttt 33162  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  33163 tattccgagtcggaccct 33180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 121 - 4
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||| | ||||||||| |||||||||||||||||   |||||||||||||||||||||||||||||||    
T  121 ctctattcttacccattttattcgtatttttaaagttgagaattttcgccgtttcagacgaaattttggcaaagaggttactttgaagtacctcattttt 22  T
Q  101 tattccgaatcagaccct 118  Q
    |||||||| || ||||||    
T  21 tattccgagtcggaccct 4  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 15 - 101
Target Start/End: Original strand, 15855 - 15941
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttttt 101  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||||    
T  15855 attttattcgtatttttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttttt 15941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0632 (Bit Score: 69; Significance: 6e-31; HSPs: 1)
Name: scaffold0632
Description:

Target: scaffold0632; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 4418 - 4518
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || ||||||||| ||||||||||||||| ||||||| ||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  4418 ctctattcttacccattttattcatatttttaaagtcggtaattttcatcgtttcagacgaaatttcgacagagaggttactttgaagtacctcattttt 4517  T
Q  101 t 101  Q
    |    
T  4518 t 4518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 121256 - 121363
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||   | ||||||||||||||||||  ||||||||    
T  121256 ctctattcttacccattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcggtagagaggttactttgaagtaaatcattttt 121355  T
Q  101 tattccga 108  Q
     |||||||    
T  121356 gattccga 121363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 67; Significance: 9e-30; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 11021 - 11119
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||||| ||| || |||||||||||||| |||||||||| |||||||||||||||||||||||||||  || |||||||||||||||||||||||||||    
T  11021 ctctattcttacccattttattcgtattgttaaagtcggaaattttcgtcgtttcagacgaaatttcggcagagaggttactttgaagtacctcatttt 11119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 966 - 859
Alignment:
Q  1 ctctatccttgcctattttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattttt 100  Q
    |||||| ||| || |||||||||||||||||||||  ||||||||||||||||||||||||||||||  || | ||||||||||||| ||||||||||||    
T  966 ctctattcttacccattttattcgtatttttaaagctgggaattttcgtcgtttcagacgaaatttcggcagaaaggttactttgaaatacctcattttt 867  T
Q  101 tattccga 108  Q
     |||||||    
T  866 gattccga 859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 23492 - 23600
Alignment:
Q  1 ctctatccttgcctattttattcgtatttt-taaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||||| ||| || |||||||||||||||| ||||||||||||||||| || |||| |||||||||||   | |||||||||||||||||||||||||||    
T  23492 ctctattcttacccattttattcgtattttttaaagtcgggaattttcatcatttctgacgaaatttcggtagagaggttactttgaagtacctcatttt 23591  T
Q  100 ttattccga 108  Q
    | |||||||    
T  23592 tgattccga 23600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0431 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 181 - 264
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||||||||||||||||||| | | |||||||||  |||||||||||||||| || ||||| |||||||||||||||||||||    
T  181 attttattcgtatttttaaagccagaaattttcgttatttcagacgaaatttcgacgaagagtttactttgaagtacctcattt 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 84
Target Start/End: Complemental strand, 40856 - 40787
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttacttt 84  Q
    |||||||||||||||||||||||| | |||||| |||||||||||||||| || ||||||||||||||||    
T  40856 attttattcgtatttttaaagtcgagcattttcatcgtttcagacgaaatctcgacaaagaggttacttt 40787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 15 - 98
Target Start/End: Complemental strand, 20505 - 20422
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcattt 98  Q
    ||||| |||||| |||||||| || |||||||||| |||||||||||||||||  || ||||||||||||| ||||||||||||    
T  20505 attttgttcgtacttttaaagccgagaattttcgttgtttcagacgaaatttcggcagagaggttactttggagtacctcattt 20422  T

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Target: scaffold0027 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 119
Target Start/End: Complemental strand, 65701 - 65622
Alignment:
Q  41 aattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatt-ttttattccgaatcagaccctt 119  Q
    ||||||||| ||||| ||||||||||| ||||||| ||||||||||||||||||||| ||||||||||| || |||||||    
T  65701 aattttcgttgtttcggacgaaatttcgacaaagatgttactttgaagtacctcatttttttattccgagtcggaccctt 65622  T

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Target: scaffold0027; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 285
Target Start/End: Complemental strand, 65510 - 65470
Alignment:
Q  245 tgtcaataagtccgaaggttttcggcagtggtccaaatttc 285  Q
    ||||||| |||||||| ||||||||||||||||||||||||    
T  65510 tgtcaatgagtccgaaagttttcggcagtggtccaaatttc 65470  T

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Target: scaffold0315 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0315
Description:

Target: scaffold0315; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 10651 - 10595
Alignment:
Q  43 ttttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||    
T  10651 ttttcgtcgcttcagacgaaatttcggcaaagaggttactttgaagtacctcatttt 10595  T

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Target: scaffold0170 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 7213 - 7129
Alignment:
Q  15 attttattcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||||||| ||| |||||||| || |||||||||| |||||||||||||||||   |   |||||||||||||||||||||||||    
T  7213 attttatttgtacttttaaagccgagaattttcgttgtttcagacgaaatttcgggaggaaggttactttgaagtacctcatttt 7129  T

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Target: scaffold0290 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0290
Description:

Target: scaffold0290; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 15837 - 15760
Alignment:
Q  22 tcgtatttttaaagtcgggaattttcgtcgtttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||| ||||||||| | ||||||||||||| ||||||||||||| |   | | |||||||||||||||||||||||||    
T  15837 tcgtctttttaaagccaggaattttcgtcgcttcagacgaaattacggtagataggttactttgaagtacctcatttt 15760  T

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Target: scaffold0048 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 106
Target Start/End: Complemental strand, 7620 - 7587
Alignment:
Q  73 agaggttactttgaagtacctcattttttattcc 106  Q
    ||||||||||||||||||||||||||||||||||    
T  7620 agaggttactttgaagtacctcattttttattcc 7587  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 61371 - 61418
Alignment:
Q  52 tttcagacgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    ||||| || |||||||| || |||||||||||||||||||||||||||    
T  61371 tttcaaacaaaatttcagcatagaggttactttgaagtacctcatttt 61418  T

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Target: scaffold1380 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1380
Description:

Target: scaffold1380; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 99
Target Start/End: Original strand, 556 - 597
Alignment:
Q  58 acgaaatttcaacaaagaggttactttgaagtacctcatttt 99  Q
    |||||||||| ||| ||||||||||||| |||||||||||||    
T  556 acgaaatttcgacagagaggttactttggagtacctcatttt 597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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