View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7212_low_8 (Length: 239)
Name: NF7212_low_8
Description: NF7212
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7212_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 5 - 223
Target Start/End: Original strand, 12455274 - 12455503
Alignment:
| Q |
5 |
agcgcactattcacaacatagacacctggtattttaaagttgctagaatatctcaaaaaatctttagcacatcttacaatataaaaagagt---tttgaa |
101 |
Q |
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| T |
12455274 |
agcgcactattcacaacatagacacctggtattttaaagttgctagaatatctcaaaaaatctttagcacatcttacaatataaaaagagtacctttgaa |
12455373 |
T |
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| Q |
102 |
atatcttcggagttattttcatattttactatatttcgtgatatcactccttatttgattgagagtcaagtattagtatgaataagattta--------a |
193 |
Q |
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| T |
12455374 |
atatcttcggagttattttcatattttattatatttcgtgatatcactccttatttgattgagagtcaagtattagtatgaataagatttagtgctatca |
12455473 |
T |
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| Q |
194 |
tgctatgtgtttaattaccacactatatat |
223 |
Q |
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| T |
12455474 |
tgctatgtgtttaattacctcactatatat |
12455503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 197
Target Start/End: Original strand, 32257998 - 32258087
Alignment:
| Q |
111 |
gagttattttcatattttactat---atttcgtgatatcactccttatttgattgagagtcaagtattagtatgaataagatttaatgct |
197 |
Q |
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| T |
32257998 |
gagttatattcatattttattatgatatttcatgatatcgcctcttatttaattgagagtcaagtattggtatgaataaggtttagtgct |
32258087 |
T |
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