View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7214_high_2 (Length: 263)
Name: NF7214_high_2
Description: NF7214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7214_high_2 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 14 - 263
Target Start/End: Original strand, 1831840 - 1832089
Alignment:
| Q |
14 |
ttctctcggacatttgctgcttctcctgaggatgcaaagattgaccatgaaatctctgagaaaataagcttgctgcaaacatttttgaagcctgaacatt |
113 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1831840 |
ttctctcgaacatttgctgcttctcctgaggatgcaaagattgaccatgaaatctctgagaaaataagcttgctgcaaacatttttgaagcctgaacatt |
1831939 |
T |
|
| Q |
114 |
tggatataccaccagttcttcataatgaagcatcatggctggtatggtatgcttcatgatcatgatgcatgattcaattttaacttattatatgattttt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1831940 |
tggatataccaccagttcttcataatgaagcatcatggctggtatggtatgcttcatgatcatgatgcatgattcaattttaacttattatatgattttt |
1832039 |
T |
|
| Q |
214 |
attgcaattgttttattctaatcagcgataacattagttagggtttgatt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1832040 |
attgcaattgttttattctaatcagcgataacattagttagggtttgatt |
1832089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University