View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7214_low_1 (Length: 444)
Name: NF7214_low_1
Description: NF7214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7214_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 404; Significance: 0; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 22870402 - 22869963
Alignment:
| Q |
1 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22870402 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
22870303 |
T |
|
| Q |
101 |
ggtaaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagnnnnnnnncattaaactcttt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22870302 |
ggtaaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagttttttttcattaaactcttt |
22870203 |
T |
|
| Q |
201 |
tcttctgattttgcatatacttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagattca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22870202 |
tcttctgattttgcatatacttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagattca |
22870103 |
T |
|
| Q |
301 |
aagggtaaacaaagaaataacctgaaaaaccttcaaatgcaataaaccaaccactaaatatcttcagaaattctgtttgtgctaaagactcggacaagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22870102 |
aagggtaaacaaagaaataacctgaaaaactttcaaatgcaataaaccaaccactaaatatcttcagaaattctgtttgtgctaaagactcggacaagct |
22870003 |
T |
|
| Q |
401 |
cttcatcttttctccttcagtcgttctatattcttcgaca |
440 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22870002 |
cttcatcttttctccttcagtcgttctattttcttggaca |
22869963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 1 - 440
Target Start/End: Complemental strand, 22803904 - 22803465
Alignment:
| Q |
1 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22803904 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
22803805 |
T |
|
| Q |
101 |
ggtaaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagnnnnnnnncattaaactcttt |
200 |
Q |
| |
|
| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
22803804 |
gttaaaattgatttaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagctttttttcattaaactcttt |
22803705 |
T |
|
| Q |
201 |
tcttctgattttgcatatacttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagattca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22803704 |
tcttctgattttgcatatacttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagattca |
22803605 |
T |
|
| Q |
301 |
aagggtaaacaaagaaataacctgaaaaaccttcaaatgcaataaaccaaccactaaatatcttcagaaattctgtttgtgctaaagactcggacaagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22803604 |
aagggtaaacaaagaaataacctgaaaaactttcaaatgcaataaaccaaccactaaatatcttcagaaattctgtttgtgctaaagactcggacaagct |
22803505 |
T |
|
| Q |
401 |
cttcatcttttctccttcagtcgttctatattcttcgaca |
440 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
22803504 |
cttcatcttttctccttcagtcgttctattttcttggaca |
22803465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 22829599 - 22829180
Alignment:
| Q |
1 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||| |||| |||||||| |
|
|
| T |
22829599 |
ctattgctgagtctgttctctctggtggtcgttgatttcaaaaggcacgtgaaattgatgcttaattggtccatttcgattttgtaatgtggtagatttt |
22829500 |
T |
|
| Q |
101 |
ggtaaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagnnnnnnnncattaaac--tct |
198 |
Q |
| |
|
| |||||| |||| |||| |||||||||||| ||||||||| ||||| ||||||| ||| |||||||| |||||||||| |||||||| | | |
|
|
| T |
22829499 |
gttaaaatggattaaagatagtttgttatctaaaaagtgaattcatgcttgagtaaatagtttaatagttacatgaaagcattttctcattaaactattt |
22829400 |
T |
|
| Q |
199 |
tttcttctgattttgcatatacttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagatt |
298 |
Q |
| |
|
||| || |||||||| |||||||| | | ||||||||||||||||||||||||| ||| || ||||||||||||||| ||||| ||| |
|
|
| T |
22829399 |
tttgttttgattttgtttatactttattgggtccaagtttgcatctattttgagtagacgaatgacactacaattattatttagtaa----------att |
22829310 |
T |
|
| Q |
299 |
caaagggtaaacaaagaaataacctgaaaaaccttcaaatgcaataaaccaaccactaaatatcttcagaaattctgtttgtgctaaagactcggacaag |
398 |
Q |
| |
|
|||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| |||||| |
|
|
| T |
22829309 |
caaagggtaatcaaagaaataacctgtaaaaccttcaaatgcaataaaccaatcactaaataacttcagaaattatgtttgtgctaaagactcagacaag |
22829210 |
T |
|
| Q |
399 |
ctcttcatcttttctccttcagtcgttcta |
428 |
Q |
| |
|
|||||||||||||||||| || |||||||| |
|
|
| T |
22829209 |
ctcttcatcttttctcctccactcgttcta |
22829180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 3 - 436
Target Start/End: Complemental strand, 22887864 - 22887433
Alignment:
| Q |
3 |
attgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagattttgg |
102 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| ||| | ||||| |||||||||||| | ||| ||||||||| ||| ||| ||||||| |
|
|
| T |
22887864 |
attgctgaatctgttctctcgggtggtcgttgatttcaaaagacacgtctaattgatgcttaattggtgcattttgattttgtaatgtattaaattttgg |
22887765 |
T |
|
| Q |
103 |
taaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagnnnnnnnncattaaactcttttc |
202 |
Q |
| |
|
||||| |||| ||||||||||||||||| ||||||||||||||| ||||||| || |||||||| ||||| ||| ||||||||| |||| |
|
|
| T |
22887764 |
taaaaaggattaaagagagtttgttatctaaaaagtgaaatcatgtttgagtaaatggtttaatagttacataaaatcattttctcattaaacttttttt |
22887665 |
T |
|
| Q |
203 |
-ttctgattttgcatatacttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagattcaa |
301 |
Q |
| |
|
|| |||||||| |||||||| | | |||||||| |||||||||||||| | || ||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
22887664 |
gttttgattttgtatatacttcattgcgtccaagtttgtatctattttgagtaaacga--gagactacaattattgttcagtaatatcacagagattcaa |
22887567 |
T |
|
| Q |
302 |
agggtaaacaaagaaataacctgaaaaaccttcaaatgcaataaaccaaccactaaatatcttcagaaattctgtttgtgctaaagactcggacaagctc |
401 |
Q |
| |
|
||||||||| ||||||||||||| ||||||| |||||||||||| ||||||||||||| ||||||||||| | ||||| |||||||||| |||||||| |
|
|
| T |
22887566 |
agggtaaactaagaaataacctgcaaaacct-caaatgcaataaggcaaccactaaataacttcagaaattatatttgttctaaagactcaaacaagctc |
22887468 |
T |
|
| Q |
402 |
ttcatcttttctccttcagtcgttctatattcttc |
436 |
Q |
| |
|
|||||||||||||||| | |||||| || |||||| |
|
|
| T |
22887467 |
ttcatcttttctcctttactcgttcgattttcttc |
22887433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22838620 - 22838404
Alignment:
| Q |
1 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
100 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| |||| | || |||||||| |||||||||||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
22838620 |
ctattgctgaatccgttctctctggtggtcgttgattttaaaacgtacgtgaaattgatgcttaattggtgcattttgattttgtaatgtgttagatttt |
22838521 |
T |
|
| Q |
101 |
ggtaaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagnnnnnnnncattaaactcttt |
200 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| || || || ||||||||||||||||||| ||||||||| ||| |
|
|
| T |
22838520 |
ggtaaaatggattaaagagagtttgttatctgaaaagtgaaatcatgtttaag----tattttaatagatacatgaaagcttttactcattaaacttttt |
22838425 |
T |
|
| Q |
201 |
tcttctgattttgcatatact |
221 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
22838424 |
ggttctgattttgcatatact |
22838404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 22808188 - 22808014
Alignment:
| Q |
1 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||| |||| | | || ||||||||| ||||||||||||| |
|
|
| T |
22808188 |
ctattgctgagtctgttctctctggtggtcgttgatttcaaaaggcacgtgaaattgatgcttgattgatttggtttgattttgtaatgtgttagatttt |
22808089 |
T |
|
| Q |
101 |
ggtaaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatg |
175 |
Q |
| |
|
|||||||| |||| ||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| |||||| |
|
|
| T |
22808088 |
ggtaaaatggattaaagagagtttgttatctgaaaagtgaaatcatgtttgagaaaatagtttaatagttacatg |
22808014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 1 - 352
Target Start/End: Complemental strand, 22874496 - 22874152
Alignment:
| Q |
1 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
100 |
Q |
| |
|
||||| ||||||| |||||||| ||||||||||||||| |||| | || |||||||| | ||||||||| | ||| ||||||||| ||||||||||||| |
|
|
| T |
22874496 |
ctatttctgaatccgttctctccggtggtcgttgattttaaaatgtacgtgaaattgatttttaattggtgcattttgattttgtaatgtgttagatttt |
22874397 |
T |
|
| Q |
101 |
ggt-aaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagnnnnnnnncattaaactctt |
199 |
Q |
| |
|
||| ||||| |||| ||||||||||||||||||||||||||| ||||| ||||||| || |||||||||||||| |||| ||||||||| || |
|
|
| T |
22874396 |
ggtaaaaatggatttaagagagtttgttatctgaaaagtgaattcatgtttgagtaagtagtttaatagatacatcaaagcttttactcattaaactttt |
22874297 |
T |
|
| Q |
200 |
ttcttctgattttgcatata--cttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagat |
297 |
Q |
| |
|
| ||||||||| |||||| || || || | |||||||| ||| |||||||| ||| ||| ||||||| |||||||||||| || || |
|
|
| T |
22874296 |
tggttctgatttaacatatactctattttgtttccaagtttgtatcaattttgagcagacgaaaaagactactattattattcagcaa----------at |
22874207 |
T |
|
| Q |
298 |
tcaaagggtaaacaaagaaataacctgaaaaaccttcaaatgcaataaaccaacc |
352 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |
|
|
| T |
22874206 |
tcaaggggtaaacaaagaaataacctgaaaaaccttcaaatgcagtaaaacaacc |
22874152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 262 - 385
Target Start/End: Complemental strand, 22884993 - 22884871
Alignment:
| Q |
262 |
gagactacaattattattcagtaatatcatagagattcaaagggtaaacaaagaaataacctgaaaaaccttcaaatgcaataaaccaaccactaaatat |
361 |
Q |
| |
|
||||||||| ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| |
|
|
| T |
22884993 |
gagactacagttattattcagcaatatcaaagagattcaaagggtaaacaaagaaataacctg-caaaccttcaaatgcgataaggcaaccactaaataa |
22884895 |
T |
|
| Q |
362 |
cttcagaaattctgtttgtgctaa |
385 |
Q |
| |
|
||||| |||| || |||||||||| |
|
|
| T |
22884894 |
cttcaaaaatcctatttgtgctaa |
22884871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 232 - 285
Target Start/End: Complemental strand, 22807392 - 22807339
Alignment:
| Q |
232 |
caagtttgcatctattttgagtagatgaacgagactacaattattattcagtaa |
285 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
22807392 |
caagtttgtatctattttgagtagatgaacgagactacagttattattcagtaa |
22807339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 1e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 21152101 - 21152442
Alignment:
| Q |
1 |
ctattgctgaatctgttctctctggtggtcgttgatttcaaaaggcacatgaaattggtgcttaattggtccgtttggattttgtattgtgttagatttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||||||||||||||||||||||| ||||||||| ||||| ||| |||||| || ||| ||||||||| |
|
|
| T |
21152101 |
ctattgctgaatctgttctctctggtggttgatgatttcaaaaggcacatgaaattagtgcttaatcggtccattttgattttctaatgttttagatttt |
21152200 |
T |
|
| Q |
101 |
ggtaaaatagattcaagagagtttgttatctgaaaagtgaaatcatgattgagtagataatttaatagatacatgaaagnnnnnnnncattaaactcttt |
200 |
Q |
| |
|
| ||||| |||| ||||||| ||||||||||||| || |||| ||| ||||| |||||||||||||| || |||||| ||| |
|
|
| T |
21152201 |
gaaaaaatggattgaagagagattgttatctgaaaggtaaaatgatgtttgag------------tagatacatgaaag-tttttctcaataaacttttt |
21152287 |
T |
|
| Q |
201 |
tcttctgattttgcatatacttttacgtattcaagtttgcatctattttgagtagatgaacgagactacaattattattcagtaatatcatagagattca |
300 |
Q |
| |
|
| |||||||||||||||||| | || | |||||||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| | |
|
|
| T |
21152288 |
tgttctgattttgcatatacctcattgtgtccaagtttgtacctattttgagtagacgaatgagactacaattattattcagtaatatcataaagattta |
21152387 |
T |
|
| Q |
301 |
aagggtaaacaaagaaataacctgaaaaaccttcaaatgcaataaaccaaccact |
355 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||||||||||| |||||||| |
|
|
| T |
21152388 |
aagggtaaccaaataaataacctgcaaaaccttcaaatgcaataaggcaaccact |
21152442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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