View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7214_low_3 (Length: 248)
Name: NF7214_low_3
Description: NF7214
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7214_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 124; Significance: 7e-64; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 213
Target Start/End: Complemental strand, 28287099 - 28286895
Alignment:
| Q |
11 |
tgtttctttgaaaaacaaatctagacaatttcgtgcatgaa--tcaccattaaaaagattgcgc-tttttttactattactttttccatcttatgtgttt |
107 |
Q |
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| T |
28287099 |
tgtttctttgaaaaacaaatctagacaatttcgtgcatgaaccacaccattaaaaagattgcgcttttttttactattactttttccaccttatgtgttt |
28287000 |
T |
|
| Q |
108 |
cttacgcaccnnnnnnnnnctttccaaaatacccttggtttagattttataatccgaacatgatttcaagaaattttcggattatataatccaaaaatga |
207 |
Q |
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| T |
28286999 |
ctcacgcaccctattttttc-ccccaaaatacccttggtttagattttataatccgaacatgatttcaagaaattttcgaattatataatccgaaaatga |
28286901 |
T |
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| Q |
208 |
ctttta |
213 |
Q |
| |
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|||||| |
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| T |
28286900 |
ctttta |
28286895 |
T |
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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Original strand, 15811340 - 15811425
Alignment:
| Q |
128 |
tttccaaaatacccttggtttagattttataatccgaacatgatttcaagaaattttcggattatataatccaaaaatgactttta |
213 |
Q |
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| T |
15811340 |
tttccaaaatatcattagttcggattttataatttaaacaagatttcaagaaatattcagattatataatccaaaaatgtctttta |
15811425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 213
Target Start/End: Original strand, 15727508 - 15727590
Alignment:
| Q |
131 |
ccaaaatacccttggtttagattttataatccgaacatgatttcaagaaattttcggattatataatccaaaaatgactttta |
213 |
Q |
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| T |
15727508 |
ccaaaatatcattggttcggattttataatttgaacatgatttcaagaaatattcatattacataatccgaaaatgtctttta |
15727590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 213
Target Start/End: Complemental strand, 11140085 - 11140000
Alignment:
| Q |
128 |
tttccaaaatacccttggtttagattttataatccgaacatgatttcaagaaattttcggattatataatccaaaaatgactttta |
213 |
Q |
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||||||||||| | ||||||| |||| ||||||||||||| ||||| | ||||||| |||||||||||| | |||||| |||||| |
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| T |
11140085 |
tttccaaaatatcattggtttggattatataatccgaacaagattttcataaatttttggattatataattcgaaaatggctttta |
11140000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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