View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7216_low_1 (Length: 645)
Name: NF7216_low_1
Description: NF7216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7216_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 12 - 626
Target Start/End: Complemental strand, 22277310 - 22276688
Alignment:
| Q |
12 |
tttggtggttgaagacaaaaattgttaatgtttctgcaggtctttatggctggtggcagcgtctttcgactatttgggcgttggttaagtgtgttctttt |
111 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22277310 |
tttggtggttgaagacaaaaattgttaatgtttctacaggtctttatggctggtggcagcgtctttcgactatttgggcgttggttaagtgtgttctttt |
22277211 |
T |
|
| Q |
112 |
tgtttgtattatgtactgaactttaaagcttctttttaacaca--ttgtgctgagaagattgcctacaaaggtggttaataaattccattttatagtttg |
209 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
22277210 |
tgtttgtattatgtattgaactttaaagcttctttttaacacacattgtgctgagaagattgcctataaaggtggttaataaattccattttg--gtttg |
22277113 |
T |
|
| Q |
210 |
ttnnnnnnnnn-ccacaacaacctgtcatnnnnnnntagcaccaacaatattttatctagagtatatgtaaaacaaatttaaggaggtatgtctattgnn |
308 |
Q |
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|| |||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22277112 |
ttaaaaaaaaaaccacaacagcctatcataaaaaaatagcaccaacaatattttatctagagtatatgtaaaacaaatttaaggaggtatgtctattgaa |
22277013 |
T |
|
| Q |
309 |
nnnnntgaaggttataatgtgctttcggaaggaattgaggagaaaaaattagataaaagcaaaacttatattgttt-gagaaaatactttgattcttatt |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
22277012 |
aaaagtgaaggttataatgtgctttcggaaggaattgaggagaaaaaatttgataaaagcaaaacttatattgttttgagaaaatactttgattcttatt |
22276913 |
T |
|
| Q |
408 |
tacttgtttgatttaccggtaacaaagttctaccttatttataaaactttctttggactaactacttatttattatagaa-----tatgcttcctaccaa |
502 |
Q |
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| T |
22276912 |
tacttgtttgatttaccggtgacaaagttctaccttatttataaaactttctttggactaactacttatttattatagaactttctatgcttcctaccaa |
22276813 |
T |
|
| Q |
503 |
acatattcttttgaatttaaatgtgacggttactgcatcaaattcttgtagataatatataagaaaaggaaacatgatttatgctgtgaaccgcaattt- |
601 |
Q |
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||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22276812 |
acatattgttttgaatttaaaagtgacgggtactgcatcaaattcttgtagataatatataagaaaaggaaacatgatttatgctgtgaaccgcaatttg |
22276713 |
T |
|
| Q |
602 |
gtatgtgcgtaccggtatgtggtat |
626 |
Q |
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| T |
22276712 |
gtatgtgcgtaccggtttgtggtat |
22276688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 89 - 171
Target Start/End: Complemental strand, 23413571 - 23413488
Alignment:
| Q |
89 |
gcgttggttaagtgtgttctttttgtttgtattatgtactgaactttaaagcttctttttaacaca--ttgtgctgagaagattg |
171 |
Q |
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| T |
23413571 |
gcgttggttaagcatgttatttttgtttgtat-atgtactgaactttaaaacttctttttaacacatcttatgctgagaagattg |
23413488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 32 - 140
Target Start/End: Original strand, 20224204 - 20224313
Alignment:
| Q |
32 |
attgttaatgtttctgcaggtctttatggctggtggcagcgt-ctttcgactatttgggcgttggttaagtgtgttctttttgtttgtattatgtactga |
130 |
Q |
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||||||||||||| || |||||| |||| || |||||| || | ||||||||||||||| |||| |||| ||| |||| ||||||||| |||||||| |
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| T |
20224204 |
attgttaatgtttatgtaggtctatatgattgatggcagagtgcattcgactatttgggcattggctaagaatgtgtttttagtttgtattttgtactga |
20224303 |
T |
|
| Q |
131 |
actttaaagc |
140 |
Q |
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| ||| |||| |
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| T |
20224304 |
attttgaagc |
20224313 |
T |
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