View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7216_low_3 (Length: 328)
Name: NF7216_low_3
Description: NF7216
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7216_low_3 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 14 - 314
Target Start/End: Original strand, 58910 - 59210
Alignment:
| Q |
14 |
gcacacacgcaaaggaaaggaaaggaaagtttaaattaactcattagcagtcatagattatgaatgaatacatctccgagcaacaaagaaaagaacaaac |
113 |
Q |
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| T |
58910 |
gcacacacacaaaggaaaggaaaggaaagtttaaattaactcattagcagtcatagattatgaatgaatacatctccgagcaacaaagaaaagaacaaac |
59009 |
T |
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| Q |
114 |
ctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttggt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59010 |
ctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttggt |
59109 |
T |
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| Q |
214 |
gctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
59110 |
gctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgatgt |
59209 |
T |
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| Q |
314 |
c |
314 |
Q |
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| |
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| T |
59210 |
c |
59210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 107 - 311
Target Start/End: Complemental strand, 8690190 - 8689986
Alignment:
| Q |
107 |
aacaaacctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgct |
206 |
Q |
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| T |
8690190 |
aacaaacctgctggaaggtgctaagagatgccaagatggaacctccgatccagacactgtattttctctcaggtggtgcaaccaccttgatcttcatgct |
8690091 |
T |
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| Q |
207 |
acttggtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttc |
306 |
Q |
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| T |
8690090 |
acttggggccaaagcagaaatttccttgctcattctatcagcaatgcctgggaacatggtagttcctcctgaaagcacaatgttaccgtacaagtctttc |
8689991 |
T |
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| Q |
307 |
ctgat |
311 |
Q |
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||||| |
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| T |
8689990 |
ctgat |
8689986 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 112 - 268
Target Start/End: Original strand, 37050189 - 37050345
Alignment:
| Q |
112 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
211 |
Q |
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| T |
37050189 |
acctgttggaaagtgctgagagatgccaaaatggaacctccaatccagacactgtacttcctctctggtggtgctacaaccttgattttcatgctactag |
37050288 |
T |
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| Q |
212 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttg |
268 |
Q |
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| T |
37050289 |
gagccaatgctgtaatctccttgctcattctatcagcaataccagggaacattgttg |
37050345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 112 - 272
Target Start/End: Complemental strand, 68800 - 68640
Alignment:
| Q |
112 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
211 |
Q |
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| T |
68800 |
acctgttggaaggtgctgagggaagccaaaatggagcctccaatccagacactatacttcctctctggtggtgcaaccaccttaattttcatgctacttg |
68701 |
T |
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| Q |
212 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacc |
272 |
Q |
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| T |
68700 |
gtgccaatgctgtgatctccttgctcatcctatcagcaatgccggggaacatagtcgtacc |
68640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 275
Target Start/End: Original strand, 1261854 - 1262017
Alignment:
| Q |
112 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
211 |
Q |
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| T |
1261854 |
acctgttgaaaggtactgagtgatgccaagatagacccaccaatccagacactgtacttcctctcaggaggtgcaaccaccttgattttcatgctacttg |
1261953 |
T |
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| Q |
212 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcc |
275 |
Q |
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| || | ||| || ||||||||||| | |||||||| |||||||||||||| | |||||| |
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| T |
1261954 |
gagcaagagcactgatttccttgctcatacggtcagcaattccaggaaacatggtagaacctcc |
1262017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 112 - 311
Target Start/End: Complemental strand, 41388764 - 41388565
Alignment:
| Q |
112 |
acctgttggaaggtgcttagggatgccaagatagaaccaccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttg |
211 |
Q |
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| T |
41388764 |
acctgttgaaaagtgctaagagaagctaagatagagccaccaatccagacactgtattttctctcgggtggagcaaccaccttgatcttcatgctgcttg |
41388665 |
T |
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| Q |
212 |
gtgctaatgcagaaatctccttgctcattctatcagcaatgccaggaaacatggttgtacctcctgataggacaatgttaccatacaggtctttcctgat |
311 |
Q |
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| T |
41388664 |
gggccaacgcggtaatttccttgctcattctgtcagcaataccagggaacatagtagtaccaccactaaggacaatgtttccatacaggtcctttctgat |
41388565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 151 - 268
Target Start/End: Original strand, 43646914 - 43647031
Alignment:
| Q |
151 |
ccaatccagacactgtactttctctcaggcggtgctaccaccttgatcttcatgctacttggtgctaatgcagaaatctccttgctcattctatcagcaa |
250 |
Q |
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|||||||||||||||||||||||||| || || || || ||||| ||||||||||| || || || | |||| |||||||||||||| | ||||||| |
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| T |
43646914 |
ccaatccagacactgtactttctctctggtggagccacaaccttaatcttcatgctgctaggagccagggcagtgatctccttgctcatacggtcagcaa |
43647013 |
T |
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| Q |
251 |
tgccaggaaacatggttg |
268 |
Q |
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| T |
43647014 |
taccagggaacatagttg |
43647031 |
T |
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