View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7218_high_1 (Length: 415)
Name: NF7218_high_1
Description: NF7218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7218_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 19 - 312
Target Start/End: Complemental strand, 33334986 - 33334696
Alignment:
| Q |
19 |
ggattgccctaattcctactctatattgggatgctcaactcttttcttcttccaccttgtattccttagttgaattcattaacttgttaactatgcatgt |
118 |
Q |
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| T |
33334986 |
ggattgccctaattcctactctatattgggatgctcaactcttttcttcttccaccttgtattccttagttgaattcattaacttgttaactatgcatgt |
33334887 |
T |
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| Q |
119 |
cacttcctttgtttatactat---agtaacctgctggtttatttggaagtatgtaaatggtttagtgtttaataataacaagtggcatctatgctctatg |
215 |
Q |
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| T |
33334886 |
cacttcctttgtttatactatagtagtaacctgctggtttatttggaagtatgtaaatggtttag-------taataacaagtggcatctatgctctatg |
33334794 |
T |
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| Q |
216 |
ctctggttttgaacaggacctgtaaaggaaaaatgaggttgaacctctcgaattaaaaatac-tgagtttaaaagataaattaataataacaattgga |
312 |
Q |
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| T |
33334793 |
ctctggttttgaacggggcctgtaaatgaaaaatgaggttgaacctctcgaattaaaaatacttgagtttaaaagataaattaataataacaattgga |
33334696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 312 - 409
Target Start/End: Complemental strand, 33334672 - 33334575
Alignment:
| Q |
312 |
atccactcctattgttaattctttttgcatgtttttaaaggctctaatttgcagaaacagttgcgccttgttgcttggatctccattggtaacaccat |
409 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33334672 |
atccactcctattgttgattctttttgcatgtttttacaggctctaatttgcagaaacagttgcgccttgttgcttggatctccattggtaacaccat |
33334575 |
T |
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