View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7218_low_3 (Length: 382)
Name: NF7218_low_3
Description: NF7218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7218_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 86 - 362
Target Start/End: Complemental strand, 40886027 - 40885752
Alignment:
| Q |
86 |
atgttttattaatatttcaaactgagaagtgttgaaagtcattataaaggatatacataataaccgaaaaaacttcattctatttgggagggcttatgag |
185 |
Q |
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| T |
40886027 |
atgttttattaatatttcaaactgagaagtgttgaaagtcattataaaggatatacataataactgaaaaaacttcattctatttgggagggcttatgag |
40885928 |
T |
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| Q |
186 |
cgacaacaaaactctaagacaaatacataagtggttttagaaaaatagattcttattatgacaaatgcattattgtgtaatgcaaatggttgggtgtgct |
285 |
Q |
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| T |
40885927 |
cgacaacaaaactctaagacaaatacataagtggttttagaaaaattgattcttattatgacaaatgcattattgtgtaatgcaaatggttgggtgtg-t |
40885829 |
T |
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| Q |
286 |
ttgtaaggtgaaactatgacaatacgagttcatctgatcaatcctattaaaatgtatttgagaataaaatgaaacat |
362 |
Q |
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| T |
40885828 |
ttgtaaggtaaaattataacaatacgagttcatctgatcaatcctattaaaatgtatttgagaataaaatgaaacat |
40885752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 40886287 - 40886211
Alignment:
| Q |
18 |
aaaagccaacgcaaaatgcaaaacaaataacctaagcatcaaattcaccgaatgctaatttcaaaggaatgttttat |
94 |
Q |
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| T |
40886287 |
aaaagccaacgcaaaatgcaaaacaaataacctaagcatcaaattcaccgaatgctaatttcaaaggaatgttttat |
40886211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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