View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7218_low_4 (Length: 361)
Name: NF7218_low_4
Description: NF7218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7218_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 352
Target Start/End: Original strand, 48644832 - 48645166
Alignment:
| Q |
18 |
gattgttcagtacgtgttagaaatggtggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagcagtaacccatt |
117 |
Q |
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| T |
48644832 |
gattgttcagtgcgtgttagaaatggtggtggaagtggtggtggtttagttgtgcctgcaaatattggttctgccacggtggcaacagcagtaacccatt |
48644931 |
T |
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| Q |
118 |
agaggtagggtcgagccagcaagagaagaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcacatatannnnnnn |
217 |
Q |
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| T |
48644932 |
agaggtagggtcgagccagcaagagaagaatcaaaaatattatatagatcaaaccacaccactgacattacaatatttgacatttcacatatattttttt |
48645031 |
T |
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| Q |
218 |
nnnnnnnnnnnncaccccactccccttcgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacatatatataatgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48645032 |
attttttgttttcaccccactccccttcgttagagtcatgtcattttagtaaaggcttacttgtatacttactagcagttgctatacatatatataatgt |
48645131 |
T |
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| Q |
318 |
cttgtttgattaaaactattggacagttttcatct |
352 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
48645132 |
cttgtttgattaaaactattggacagttttcatct |
48645166 |
T |
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