View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7218_low_5 (Length: 357)
Name: NF7218_low_5
Description: NF7218
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7218_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 7584603 - 7584916
Alignment:
| Q |
18 |
gaatgaatggatgttgctggcttctgcgagaatgtcccgctttccgattacgagttcatgttaagtccactgttttgccagaaagcaagagccctatgaa |
117 |
Q |
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| T |
7584603 |
gaatgaatggatgttgctgacttctgcgagaatgtcccgctttccgattacgagttcatgttaagtccactgttttgccagaaagcaagagccctatgaa |
7584702 |
T |
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| Q |
118 |
agtttttatgattgctgattgagccctgtgcaaagttcttatgaatggaagttgctgattctgctttttgttgaaacttcaatcttccatgtttggtgaa |
217 |
Q |
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| T |
7584703 |
agtttttatgattgctgattgagccctgtgcaaagtttttatgaatggaagttgctgattctgctttttgttgaaacttcaatcttccatgtttggtgaa |
7584802 |
T |
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| Q |
218 |
ggtcctcttgactccatgtctcaaaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttg |
317 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7584803 |
ggtcctcttgactacatgtctcaaaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttg |
7584902 |
T |
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| Q |
318 |
tgattgatttttgt |
331 |
Q |
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| T |
7584903 |
tgattgatttttgt |
7584916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 18 - 112
Target Start/End: Complemental strand, 7096534 - 7096440
Alignment:
| Q |
18 |
gaatgaatggatgttgctggcttctgcgagaatgtcccgctttccgattacgagttcatgttaagtccactgttttgccagaaagcaagagccct |
112 |
Q |
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| T |
7096534 |
gaatgaatggatgttgccggcctatgcgagacggtcccacattccgattatgagttcaggttaagtccactgttttgccagatatcaagagccct |
7096440 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 241 - 329
Target Start/End: Complemental strand, 7096336 - 7096248
Alignment:
| Q |
241 |
aaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgtgattgattttt |
329 |
Q |
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| T |
7096336 |
aaatattcagccttccatggatgatccaaatgttgaatcacataaaggtaacataggctactctcaggtatcagttgtggttgattttt |
7096248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 192 - 331
Target Start/End: Complemental strand, 17980533 - 17980394
Alignment:
| Q |
192 |
aacttcaatcttccatgtttggtgaaggtcctcttgactccatgtctcaaaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaa |
291 |
Q |
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| T |
17980533 |
aacttcaatcttccatgtttggtgaaggtcctcttgactccatgtctcaaaatattcagctttccatggatgatccaaatgttgaatcacataaaggtaa |
17980434 |
T |
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| Q |
292 |
attaggctatgctcaggtgtcatttgtgattgatttttgt |
331 |
Q |
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| T |
17980433 |
cttaggctattctcaggtgtcatttgtggttgatttttgt |
17980394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 17980613 - 17980576
Alignment:
| Q |
73 |
tcatgttaagtccactgttttgccagaaagcaagagcc |
110 |
Q |
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| T |
17980613 |
tcatgttaagtccactgtttttccagaaagcaagagcc |
17980576 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 318
Target Start/End: Original strand, 9623608 - 9623702
Alignment:
| Q |
224 |
cttgactccatgtctcaaaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgt |
318 |
Q |
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| T |
9623608 |
cttgactccatgtctcaaaatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
9623702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 224 - 318
Target Start/End: Complemental strand, 13613637 - 13613543
Alignment:
| Q |
224 |
cttgactccatgtctcaaaatatccagctttccatggatggtccaaatggtaaatcacataaaggtaaattaggctatgctcaggtgtcatttgt |
318 |
Q |
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| T |
13613637 |
cttgactccatgtctcaaaatattcagctttccatgcaggatccaaatgttgaatcacataaaggtaacctaggctaatctcaggtgtcagttgt |
13613543 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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