View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7219_high_4 (Length: 339)
Name: NF7219_high_4
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7219_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 16 - 324
Target Start/End: Complemental strand, 5038218 - 5037917
Alignment:
| Q |
16 |
taatattttatgctattcaaaataaattcacatcgcagcaatcacaatatgcatcgcaatagtatagtattgtttaaattgatttctattcaccggtttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5038218 |
taatattttatgctattcaaaataaattcacaccgcagcaatcacaatatgcatcgcaatagtatagtattgtctaaattgatttctattcaccggtttt |
5038119 |
T |
|
| Q |
116 |
atgtgatacaattgataaatggtgggacttttaagtatgtgattagagatttaatttagtatctagaaaaattagtattactttttgtttcaatagagaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5038118 |
atgtgatacaattgataaatggtgggac-tttaagcatgtgattagagatttaatttagcatctagaaaaattagtattactttttgtttcaatagagaa |
5038020 |
T |
|
| Q |
216 |
aggaatccatgataattcaaagtttaactaatggtcgtttcaaccatagtacttcgttggtttgtctttaactgaaatttattgaccaattaagcttaat |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
5038019 |
aggaatccatgataattcaaagtttaactaatattcgtttcaaccatagtacttcattggtttgtctt------aaattcattgaccaattaagcttaat |
5037926 |
T |
|
| Q |
316 |
catttttgt |
324 |
Q |
| |
|
||||||||| |
|
|
| T |
5037925 |
catttttgt |
5037917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University