View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7219_low_1 (Length: 586)
Name: NF7219_low_1
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7219_low_1 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 16 - 586
Target Start/End: Original strand, 46789335 - 46789895
Alignment:
| Q |
16 |
aatgtttcattcaaggatttgccattcttcacaataaacactgtctccatgccccaagtgaggtggcgttctagatgacagtgcaggaaccatactcctg |
115 |
Q |
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| T |
46789335 |
aatgtttcattcaaggatttgccattcttcacaataaacactgtctccatgccccaagtgaggtggcgttctagatgacagtgcaggaaccatactcctg |
46789434 |
T |
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| Q |
116 |
taattgaatgaacagatttatacataaaaaagttatatagtttgtgcaacaatgagttttgaactaagnnnnnnnnnnnnnnnnnnnnnntagttaaata |
215 |
Q |
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| T |
46789435 |
taattgaatgaacagatttatacataaaaaagttatatagtttgtgcaacaatgagttttgaactaagaaaaatggaaagaaaaaaaaaaaagttaaata |
46789534 |
T |
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| Q |
216 |
taaggggtatatatgcaatgctatttacaagggttgctaatagaatatgatttgttatgattctttttacaagaaacttagggtgacttaaagatcacgt |
315 |
Q |
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| T |
46789535 |
taaggggtatatatgcaatgctatttacaa----------tagaatatgatttgttatgattctttttacaagaaacttagggtgacttaaagatcacgt |
46789624 |
T |
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| Q |
316 |
taccttaaagaaaaaacaaagatgtttactgtgtataagttcatcagagtacatacctgggttggaggccagaaacctaacggcagcccatccactttta |
415 |
Q |
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| T |
46789625 |
taccttaaagaaaaaacaaagatgtttactgtgtataagttcatcagagcacatacctgggttggaggccagaaacctaacggcagcccatccactttta |
46789724 |
T |
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| Q |
416 |
ggcaccataagggtattcaaaagtggaggatcaatgagattgtaattcatgggatccttacttttattgaaattaccaaacccgtatccgacgacataga |
515 |
Q |
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| T |
46789725 |
ggcaccataagggtattcaaaagtggaggatcaatgagattgtaattcatgggatgcttacttttattgaaattaccaaacccgtatccgacgacataga |
46789824 |
T |
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| Q |
516 |
aactaaatccatggagatgcatgggatggtctaaccctcctcctaccaaatttgtcccttggaaaacaagt |
586 |
Q |
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| T |
46789825 |
aactaaatccatggagatgcatgggatggtctaaccctcctcctaccaaatttgtcccctggaaaacaagt |
46789895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 16 - 124
Target Start/End: Original strand, 46781892 - 46782000
Alignment:
| Q |
16 |
aatgtttcattcaaggatttgccattcttcacaataaacactgtctccatgccccaagtgaggtggcgttctagatgacagtgcaggaaccatactcctg |
115 |
Q |
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|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
46781892 |
aatgttgcattcaaggatttgccattcttcacaataaacaccgtctccatgccccaagagaggtggcgttctagatgacagtgcaggaaccatactcctg |
46781991 |
T |
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| Q |
116 |
taattgaat |
124 |
Q |
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||||||||| |
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| T |
46781992 |
taattgaat |
46782000 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 366 - 584
Target Start/End: Original strand, 46782239 - 46782454
Alignment:
| Q |
366 |
acatacctgggttggaggccagaaacctaacggcagcccatccacttttaggcaccataagggtattcaaaagtggaggatcaatgagattgtaattcat |
465 |
Q |
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||||||||||||| | |||| ||||||| |||||||||||| || ||||| | || ||||||||||||||||||||||| || ||||||||| | |
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| T |
46782239 |
acatacctgggtttgtagccacgaacctaatagcagcccatccatttacgggcacaagaactgtattcaaaagtggaggatcaattaggttgtaattctt |
46782338 |
T |
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| Q |
466 |
gggatccttacttttattgaaattaccaaacccgtatccgacgacatagaaactaaatccatggagatgcatgggatggtctaaccctcctcctaccaaa |
565 |
Q |
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|| || |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||| | |||||||| |
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| T |
46782339 |
ggtgtctttacttttattgaaattaccaaacccatatccaacaacatagaaactaaatccatggagatgcatagggtggtctaac---ggtgctaccaaa |
46782435 |
T |
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| Q |
566 |
tttgtcccttggaaaacaa |
584 |
Q |
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||||||||||||||||||| |
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| T |
46782436 |
tttgtcccttggaaaacaa |
46782454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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