View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7219_low_11 (Length: 262)
Name: NF7219_low_11
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7219_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 24 - 248
Target Start/End: Complemental strand, 8311811 - 8311589
Alignment:
| Q |
24 |
ggaatatccctagaaaactcaaagaatgaatatcctttaattctacccc-tcttcgttgaaattgcgttatcctatatcatctctctccctgagaaaaac |
122 |
Q |
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| T |
8311811 |
ggaatgtccctagaaaactcaaagaatgaatatcctttaattctaccccctcttcgttgaaattgcgttatcctatatcatctctctccctgagaaaaac |
8311712 |
T |
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| Q |
123 |
tcacgcctctatcattaagtctgcatattcttcataccatcagattcacacgcctccaccaattgctaacatccaaagggtattattatttctaaggcca |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
8311711 |
tcacgcctctatcattaagtctgcatattcttcataccatcagattcacacgcctccaccaattgctaccatccaaagggtat---tatttctaaggcca |
8311615 |
T |
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| Q |
223 |
caagaataatctttatcatctctgct |
248 |
Q |
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|||||||||||||||||||||||||| |
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| T |
8311614 |
caagaataatctttatcatctctgct |
8311589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 119 - 246
Target Start/End: Original strand, 33793498 - 33793622
Alignment:
| Q |
119 |
aaactcacgcctctatcattaagtctgcatattcttcataccatcagattcacacgcctccaccaattgctaacatccaaagggtattattatttctaag |
218 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||| ||||||||| ||| |||||||||| || ||||||| | ||| ||||| ||| |
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| T |
33793498 |
aaactcacgtctctattattaagtctgcatattcttcataccattagattcacaagccaccaccaattggtacaatccaaaag---atataatttccaag |
33793594 |
T |
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| Q |
219 |
gccacaagaataatctttatcatctctg |
246 |
Q |
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| T |
33793595 |
gccacaagaatgatctatatcatctctg |
33793622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 44 - 93
Target Start/End: Original strand, 33793310 - 33793359
Alignment:
| Q |
44 |
aaagaatgaatatcctttaattctacccctcttcgttgaaattgcgttat |
93 |
Q |
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||||||||||||| |||||||||| |||||||| |||||||||| ||||| |
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| T |
33793310 |
aaagaatgaatattctttaattcttcccctcttagttgaaattgtgttat |
33793359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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