View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7219_low_12 (Length: 242)
Name: NF7219_low_12
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7219_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 19943212 - 19942987
Alignment:
| Q |
10 |
gatggacatcagttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcag |
109 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
19943212 |
gatggacctcggttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacgcaagcttctggctctctcag |
19943113 |
T |
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| Q |
110 |
tcaatgttctattcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19943112 |
tcaatgttctattcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
19943013 |
T |
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| Q |
210 |
ttcgatgtcttcatattcaccaccat |
235 |
Q |
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|| | ||||||||||||||||||||| |
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| T |
19943012 |
tttggtgtcttcatattcaccaccat |
19942987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 235
Target Start/End: Original strand, 797559 - 797784
Alignment:
| Q |
10 |
gatggacatcagttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcag |
109 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
797559 |
gatggacctcggttgattaagtaagctgatgtgttgactgcttctgcccagaatttctttggtaagcctgactgcacacgcaagcttctggctctctcag |
797658 |
T |
|
| Q |
110 |
tcaatgttctattcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
797659 |
tcaatgttctattcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
797758 |
T |
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| Q |
210 |
ttcgatgtcttcatattcaccaccat |
235 |
Q |
| |
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|| | ||||||||||||||||||||| |
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| T |
797759 |
tttggtgtcttcatattcaccaccat |
797784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 8272268 - 8272043
Alignment:
| Q |
10 |
gatggacatcagttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcag |
109 |
Q |
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||||||| || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
8272268 |
gatggacctcggttgattaagtaagctgatgtgttgactgcttttgcccagaagttctttggtaagcctgactgcacacgcaagcttctggctctctcag |
8272169 |
T |
|
| Q |
110 |
tcaatgttctattcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
209 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8272168 |
tcaatgttctattcatacgctcaactacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
8272069 |
T |
|
| Q |
210 |
ttcgatgtcttcatattcaccaccat |
235 |
Q |
| |
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|| | ||||||||||||||||||||| |
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| T |
8272068 |
tttggtgtcttcatattcaccaccat |
8272043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 10 - 235
Target Start/End: Complemental strand, 6691267 - 6691042
Alignment:
| Q |
10 |
gatggacatcagttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcag |
109 |
Q |
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||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
6691267 |
gatggacctcggttgattaagtaatctgatgtgttgactgcttctgcccagaagttctttggtaagcctgaacgcacacgcaagcttctggctctctcag |
6691168 |
T |
|
| Q |
110 |
tcaatgttctattcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6691167 |
tcaatgttctattcatacgctcagctacaccattgtgttggggagtacctggcacagttctttccattctgatcccgtgctcgtagcaaaacttcttgaa |
6691068 |
T |
|
| Q |
210 |
ttcgatgtcttcatattcaccaccat |
235 |
Q |
| |
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|| | ||||||||||||||||||||| |
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| T |
6691067 |
tttggtgtcttcatattcaccaccat |
6691042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 9431863 - 9431991
Alignment:
| Q |
10 |
gatggacatcagttgattaagtaagctgatgtgttgactgcttctgcccagaagttctttggtaagcctgactgcacacacaagcttctggctctctcag |
109 |
Q |
| |
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||||||| ||||||||||||||||||| ||||||| |||||||| | ||||| |||||||||||||| |||||| || |||||| | ||||||| |
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| T |
9431863 |
gatggacctcagttgattaagtaagctaatgtgttaactgcttccgtacagaaccactttggtaagcctgcgtgcacatgcatgcttctcgatctctcat |
9431962 |
T |
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| Q |
110 |
tcaatgttctattcatacgctcagctaca |
138 |
Q |
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||||||||||| ||||||||||| ||||| |
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| T |
9431963 |
tcaatgttctactcatacgctcaactaca |
9431991 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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