View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7219_low_13 (Length: 239)

Name: NF7219_low_13
Description: NF7219
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7219_low_13
NF7219_low_13
[»] chr2 (23 HSPs)
chr2 (13-224)||(16952081-16952292)
chr2 (13-224)||(17022746-17022957)
chr2 (13-194)||(17060082-17060263)
chr2 (14-151)||(12342992-12343127)
chr2 (13-132)||(10173370-10173487)
chr2 (16-82)||(14106361-14106427)
chr2 (151-220)||(20572344-20572413)
chr2 (16-82)||(7460852-7460918)
chr2 (111-207)||(25504640-25504738)
chr2 (111-180)||(22884895-22884963)
chr2 (33-183)||(27740152-27740298)
chr2 (16-143)||(387351-387476)
chr2 (21-98)||(20572253-20572329)
chr2 (13-162)||(7696133-7696283)
chr2 (16-76)||(39338710-39338769)
chr2 (126-183)||(13699042-13699100)
chr2 (126-224)||(24308447-24308550)
chr2 (20-160)||(27879913-27880054)
chr2 (16-82)||(7874467-7874532)
chr2 (123-220)||(12257280-12257378)
chr2 (111-180)||(33788391-33788461)
chr2 (16-72)||(14405374-14405431)
chr2 (28-76)||(10524289-10524336)
[»] chr1 (18 HSPs)
chr1 (58-224)||(41126188-41126353)
chr1 (33-220)||(38544457-38544642)
chr1 (32-224)||(16577451-16577628)
chr1 (32-151)||(38548848-38548964)
chr1 (43-162)||(32882568-32882688)
chr1 (27-82)||(24659115-24659170)
chr1 (16-82)||(7857829-7857895)
chr1 (111-207)||(17033839-17033936)
chr1 (25-151)||(11439790-11439919)
chr1 (123-217)||(26602553-26602648)
chr1 (111-216)||(42374415-42374521)
chr1 (126-177)||(37200386-37200438)
chr1 (28-76)||(46814312-46814360)
chr1 (52-150)||(16148987-16149083)
chr1 (128-176)||(17993868-17993917)
chr1 (18-75)||(27031687-27031743)
chr1 (13-50)||(41126348-41126385)
chr1 (16-76)||(46692664-46692723)
[»] chr7 (19 HSPs)
chr7 (21-224)||(23983386-23983588)
chr7 (111-210)||(28534240-28534340)
chr7 (13-92)||(3478523-3478601)
chr7 (111-207)||(22567844-22567941)
chr7 (13-174)||(24324545-24324707)
chr7 (27-82)||(34390149-34390204)
chr7 (16-82)||(6585058-6585124)
chr7 (57-151)||(1321011-1321105)
chr7 (13-83)||(6716575-6716646)
chr7 (48-150)||(36449284-36449383)
chr7 (13-74)||(8745324-8745388)
chr7 (116-216)||(31409706-31409807)
chr7 (13-97)||(9107318-9107401)
chr7 (16-76)||(31971979-31972038)
chr7 (33-81)||(35745662-35745710)
chr7 (16-76)||(47325730-47325789)
chr7 (46-76)||(3867322-3867352)
chr7 (58-174)||(33719183-33719300)
chr7 (16-92)||(38306438-38306513)
[»] chr6 (4 HSPs)
chr6 (13-220)||(32935043-32935249)
chr6 (111-183)||(17278240-17278313)
chr6 (33-218)||(33968340-33968519)
chr6 (111-151)||(16180687-16180727)
[»] scaffold1613 (1 HSPs)
scaffold1613 (33-220)||(736-921)
[»] chr5 (13 HSPs)
chr5 (13-174)||(21398067-21398229)
chr5 (111-207)||(8731169-8731267)
chr5 (33-201)||(17853792-17853958)
chr5 (13-174)||(14302191-14302355)
chr5 (17-143)||(7161795-7161919)
chr5 (123-183)||(39183942-39184003)
chr5 (13-76)||(13954094-13954158)
chr5 (107-174)||(30097598-30097666)
chr5 (13-80)||(39024285-39024352)
chr5 (17-74)||(7391845-7391902)
chr5 (46-92)||(18313472-18313518)
chr5 (167-224)||(24071998-24072055)
chr5 (16-76)||(18593420-18593479)
[»] chr4 (11 HSPs)
chr4 (13-74)||(19673271-19673332)
chr4 (13-162)||(16832779-16832931)
chr4 (13-72)||(19815071-19815130)
chr4 (11-82)||(35341179-35341249)
chr4 (16-98)||(12296335-12296417)
chr4 (16-76)||(31050506-31050566)
chr4 (57-162)||(38636993-38637096)
chr4 (26-92)||(30964624-30964689)
chr4 (13-159)||(48098504-48098651)
chr4 (13-77)||(25753343-25753410)
chr4 (28-76)||(2825971-2826018)
[»] chr8 (12 HSPs)
chr8 (52-174)||(17656483-17656606)
chr8 (129-220)||(25184861-25184953)
chr8 (111-212)||(15906939-15907041)
chr8 (16-224)||(1760784-1760992)
chr8 (33-98)||(17720545-17720610)
chr8 (18-82)||(15821218-15821282)
chr8 (51-150)||(12197847-12197945)
chr8 (51-150)||(12442275-12442373)
chr8 (43-82)||(35816085-35816124)
chr8 (28-76)||(31207207-31207254)
chr8 (27-83)||(37986696-37986751)
chr8 (16-76)||(41893247-41893306)
[»] chr3 (17 HSPs)
chr3 (16-82)||(23328189-23328255)
chr3 (114-219)||(27399217-27399323)
chr3 (147-224)||(45354645-45354722)
chr3 (13-78)||(39021120-39021186)
chr3 (37-181)||(25594289-25594431)
chr3 (126-217)||(823141-823233)
chr3 (24-174)||(37123562-37123715)
chr3 (109-151)||(32010029-32010071)
chr3 (24-140)||(7105025-7105140)
chr3 (12-103)||(14879606-14879700)
chr3 (136-183)||(16266009-16266057)
chr3 (109-160)||(46358167-46358220)
chr3 (54-151)||(12086455-12086551)
chr3 (27-76)||(40023417-40023466)
chr3 (22-70)||(27399128-27399176)
chr3 (28-76)||(45398984-45399032)
chr3 (16-76)||(47235875-47235934)
[»] scaffold0050 (1 HSPs)
scaffold0050 (51-174)||(36920-37040)
[»] scaffold1384 (1 HSPs)
scaffold1384 (54-150)||(1428-1523)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 16952292 - 16952081
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16952292 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 16952193  T
Q  113 tcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16952192 tcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgt 16952093  T
Q  213 cttttatgatgt 224  Q
    ||||||||||||    
T  16952092 cttttatgatgt 16952081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 13 - 224
Target Start/End: Complemental strand, 17022957 - 17022746
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17022957 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 17022858  T
Q  113 tcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17022857 tcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgt 17022758  T
Q  213 cttttatgatgt 224  Q
    ||||||||||||    
T  17022757 cttttatgatgt 17022746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 13 - 194
Target Start/End: Complemental strand, 17060263 - 17060082
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17060263 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 17060164  T
Q  113 tcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactagg 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17060163 tcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactagg 17060082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 14 - 151
Target Start/End: Original strand, 12342992 - 12343127
Alignment:
Q  14 ttggtgttgaggactgggagtttcatttagaggggtg-ttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 112  Q
    |||||||||||||||||||||||  ||| |||||||| ||||| ||||||||||||||||||||||||||  || ||||| ||||| ||| || | ||||    
T  12342992 ttggtgttgaggactgggagtttatttttgaggggtgtttcttggggggtgagtagtgacgatgagtggt--tggatatcgtttttacag-aggtcgttt 12343088  T
Q  113 tcgtgaaggcgtctgttttaagtggtgatgtttattttg 151  Q
    ||||||||| |||||||||| ||||||| || |||||||    
T  12343089 tcgtgaaggagtctgttttaggtggtgacgtgtattttg 12343127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 10173487 - 10173370
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 112  Q
    ||||||||||||||||| |||||| |||| |||| || |||||||||| |||||||||||||||||||||| || ||||| ||||| |||||| | ||||    
T  10173487 tttggtgttgaggactgagagtttaattttgaggagtattctttgggg-tgagtagtgacgatgagtggtgttgtatatcgtttttacagtag-tcgttt 10173390  T
Q  113 tcgtgaaggcgtctgtttta 132  Q
    || ||||| |||||||||||    
T  10173389 tcatgaagacgtctgtttta 10173370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 14106427 - 14106361
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||| | ||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||    
T  14106427 ggtgttgaagtctgagagttttattttgaggggtgttctttgggggtgagtagtgacgatgagtggt 14106361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 220
Target Start/End: Original strand, 20572344 - 20572413
Alignment:
Q  151 gtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatg 220  Q
    |||||||||||| ||||||||||||||||||||  |||| || |||||||||||||| ||||||||||||    
T  20572344 gtgggtgttgtcctcatgggtgttgaaggtagggtatgagtaagtgttgtgtgtaggggtgtcttttatg 20572413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 7460852 - 7460918
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||| | |||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||    
T  7460852 ggtgttgaagtctgggagttttattttgaggggtgttctttggggttgagtagtgacgatgtgtggt 7460918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 25504738 - 25504640
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgtt-gtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtagg 207  Q
    ||||||||| |  ||||||||| |||||||||||||||||| |||||||| ||| ||| ||||||||||||| ||   |||||||||||||||||||||    
T  25504738 tttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtttgtcatcaggggtgttgaaggtggggtttgactaggtgttgtgtgtagg 25504640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 22884963 - 22884895
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggt 180  Q
    ||||||||||| |||||||||| |||||||||||| ||| ||||||||||||  ||||||||||||||||    
T  22884963 tttcgtgaaggagtctgttttaggtggtgatgttt-tttagtgggtgttgtccacatgggtgttgaaggt 22884895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 183
Target Start/End: Original strand, 27740152 - 27740298
Alignment:
Q  33 gtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttta 132  Q
    |||||||||||||||||||| ||  ||| ||||||||| ||| ||||||| ||||||||| || || |||| |  |  ||||||||||| || ||| |||    
T  27740152 gtttcatttagaggggtgttattctgggatgagtagtggcgacgagtggttatgaatatcgttctt-cagtgg--tagtttcgtgaaggagtttgtatta 27740248  T
Q  133 agtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtagg 183  Q
     ||||||  |||||||||| |||| |||||| ||||||||||||||||||||    
T  27740249 ggtggtg--gtttattttgatgggcgttgtcctcatgggtgttgaaggtagg 27740298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 143
Target Start/End: Original strand, 387351 - 387476
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcg 115  Q
    ||||||| || |||||||||| |||| ||||| |||||||||||||||| ||||||||||| | |||| ||||| |  | ||| || | | ||||||| |    
T  387351 ggtgttggggtctgggagttttattttgaggg-tgttctttgggggtgaatagtgacgatgggcggtggtgaattttgtgtttacaat-gcttgtttttg 387448  T
Q  116 tgaaggcgtctgttttaagtggtgatgt 143  Q
    |||||| |||||||||| ||||||||||    
T  387449 tgaaggagtctgttttaggtggtgatgt 387476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 20572253 - 20572329
Alignment:
Q  21 tgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 98  Q
    |||||| || |||||||||||||||||||||||||| | ||||||||||| ||||| ||||| ||| ||||| |||||    
T  20572253 tgaggaatgagagtttcatttagaggggtgttcttttgaggtgagtagtggcgatg-gtggttatggatatcgttttt 20572329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 7696133 - 7696283
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttcttt---gggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttg 109  Q
    ||||||||| |||||  ||||||| ||||  ||||||||| ||    ||| ||||||||||||||||||||||  |||||||| ||||| || | ||  |    
T  7696133 tttggtgttcaggaccaggagttttatttttaggggtgtttttctaagggagtgagtagtgacgatgagtggt--tgaatatcatttttacattggtc-g 7696229  T
Q  110 ttttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtc 162  Q
    |||||||||||| || | ||||| |||||||||| |||||| ||||||||||||    
T  7696230 ttttcgtgaaggagtttattttaggtggtgatgtgtattttggtgggtgttgtc 7696283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 39338769 - 39338710
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    |||||||||| |||||||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  39338769 ggtgttgaggtctgggagttttattttgaggg-tgttctttgtgggtgagtagtgacgatg 39338710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 13699100 - 13699042
Alignment:
Q  126 tgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtagg 183  Q
    ||||||| ||||||||||||||||| ||||||||| || ||| ||||||||||||||||    
T  13699100 tgttttaggtggtgatgtttattttggtgggtgttatcttcaggggtgttgaaggtagg 13699042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 224
Target Start/End: Complemental strand, 24308550 - 24308447
Alignment:
Q  126 tgttttaagtggtgatgtttattttg-tgggtgttgtcgtcat-----gggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttat 219  Q
    ||||||| ||| |||||||||||||| ||||||||||||||||     | |||||||| |||||   ||||||||| || |||||||| |||||||||||    
T  24308550 tgttttaggtgatgatgtttattttggtgggtgttgtcgtcatcagatgagtgttgaaagtagggtttgactaggtattctgtgtagg-gtgtcttttat 24308452  T
Q  220 gatgt 224  Q
    |||||    
T  24308451 gatgt 24308447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 160
Target Start/End: Complemental strand, 27880054 - 27879913
Alignment:
Q  20 ttgaggactgggagtttcatttagaggggtgttctttgggggt-gagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtga 118  Q
    |||||||| ||| ||||||||||||||||| || | | | | | ||||||||  |||||||||| ||| || || ||||| ||| || | |||||| |||    
T  27880054 ttgaggacggggtgtttcatttagaggggttttatatagcgtttgagtagtggtgatgagtggttatggatttcgttttt-cag-aggtcgttttcctga 27879957  T
Q  119 aggcgtctgttttaagtggtgatgtttatttt--gtgggtgttg 160  Q
    ||| |||||||||| |||||||||||||||||  ||||||||||    
T  27879956 aggagtctgttttaggtggtgatgtttatttttggtgggtgttg 27879913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 7874467 - 7874532
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||| | || ||||||| |||| ||||| |||||||| ||||||||||||||||||| |||||    
T  7874467 ggtgttgaagtcttggagttttattttgagggatgttcttt-ggggtgagtagtgacgatgggtggt 7874532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 220
Target Start/End: Complemental strand, 12257378 - 12257280
Alignment:
Q  123 gtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatg 220  Q
    |||| |||||||||||||||||||||||| | |||||||||  |||| ||||||  ||||||   ||  ||||||||||||||||  |||| |||||||    
T  12257378 gtctcttttaagtggtgatgtttattttgataggtgttgtcagcatgagtgttgttggtagggcgtggttaggtgttgtgtgtagatgtgttttttatg 12257280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 111 - 180
Target Start/End: Complemental strand, 33788461 - 33788391
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggt 180  Q
    ||||||| ||| | |||||||| ||||  ||||||||||| |||||||||||  |||||||||||||||||    
T  33788461 tttcgtggaggagcctgttttaggtggcaatgtttattttagtgggtgttgtactcatgggtgttgaaggt 33788391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 14405374 - 14405431
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttcttt-gggggtgagtagtgac 72  Q
    |||||||| | |||||||||| |||| ||||| |||||||| ||||||||||||||||    
T  14405374 ggtgttgaagtctgggagttttattttgagggatgttcttttgggggtgagtagtgac 14405431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 10524289 - 10524336
Alignment:
Q  28 tgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  10524289 tgggagttttatttggaggg-tgttctttgtgggtgagtagtgacgatg 10524336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 87; Significance: 8e-42; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 58 - 224
Target Start/End: Complemental strand, 41126353 - 41126188
Alignment:
Q  58 ggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtg 157  Q
    ||||||||||||||||||| ||||||||| ||||| ||||  |||| ||||||||||||||| |||||||||||| |||||||| | |||||||| ||||    
T  41126353 ggggtgagtagtgacgatgggtggtgatggatatcgtttta-cagtggtttgttttcgtgaatgcgtctgttttaggtggtgatatgtattttgtaggtg 41126255  T
Q  158 ttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatgatgt 224  Q
    ||||| || |||||||||||||||||  ||| ||| |||||||||||||| ||||||||||| ||||    
T  41126254 ttgtcctcttgggtgttgaaggtagggtatggctatgtgttgtgtgtaggggtgtcttttataatgt 41126188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 38544642 - 38544457
Alignment:
Q  33 gtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttta 132  Q
    ||||||||||||||||||||   | ||| ||||||||||||||||||||| ||| ||||| ||||  ||||  |    || |||||| | ||||||||||    
T  38544642 gtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgttttc-cagtgatca--ttccgtgaaagagtctgtttta 38544546  T
Q  133 agtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatg 220  Q
     ||||||||||||||||| |||  ||||||| |||||||||||||||||| |   || ||||||||||||||||||  |||||||||||    
T  38544545 ggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgtcttttatg 38544457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 16577451 - 16577628
Alignment:
Q  32 agtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 131  Q
    |||||| |||||||||||||||||| || |||||||| |||||||| |||| ||| ||||| |||||  ||| ||  ||||||||||| | |||||||||    
T  16577451 agtttcttttagaggggtgttcttttggagtgagtagggacgatgaatggttatggatatcattttttgagtggtc-gttttcgtgaaagagtctgtttt 16577549  T
Q  132 aagtggtgatgtttattttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatgatgt 224  Q
    | ||| ||||||||||||||               ||||||||||| |||||  |||||||| ||||||||||||| ||||||||||||||||    
T  16577550 aggtgatgatgtttattttgg--------------tgggtgttgaaagtagggtatgactagatgttgtgtgtaggggtgtcttttatgatgt 16577628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 32 - 151
Target Start/End: Complemental strand, 38548964 - 38548848
Alignment:
Q  32 agtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttt 131  Q
    ||||| |||||||||||||||  || ||| ||||||||||||||| ||||| ||||||||| ||||| |||| | | | ||||||||| | |||||||||    
T  38548964 agtttgatttagaggggtgttactttgggatgagtagtgacgatgggtggttatgaatatcgttttt-cagt-gatcg-tttcgtgaaagagtctgtttt 38548868  T
Q  132 aagtggtgatgtttattttg 151  Q
    | ||||||||||||||||||    
T  38548867 aggtggtgatgtttattttg 38548848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 43 - 162
Target Start/End: Original strand, 32882568 - 32882688
Alignment:
Q  43 gaggggtgttctttgggg-gtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgat 141  Q
    ||||||||||| |||||| |||||||||||||||| |||||| || ||||| | ||| |||| | | ||||||||||||| ||| |||||| | ||||||    
T  32882568 gaggggtgttcgttggggggtgagtagtgacgatgggtggtgttggatatcgtgtttacagt-gctcgttttcgtgaaggagtcagttttaggcggtgat 32882666  T
Q  142 gtttatttt-gtgggtgttgtc 162  Q
    || |||||| ||||||||||||    
T  32882667 gtatattttggtgggtgttgtc 32882688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 24659115 - 24659170
Alignment:
Q  27 ctgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||||| |||| |||||||||| ||||||||||||||||||||||| |||||    
T  24659115 ctgggagttttattttgaggggtgttatttgggggtgagtagtgacgatgggtggt 24659170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 7857829 - 7857895
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||| | |||||||||| |||| |||||||||||| ||||||||||||||| ||||| |||||    
T  7857829 ggtgttgaagtctgggagttttattttgaggggtgttctatgggggtgagtagtggcgatgggtggt 7857895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 17033839 - 17033936
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtagg 207  Q
    ||||||||| | || ||||||| ||||| ||||||||||| |||| |||||||  || ||||||||||||||||   ||||||| |||||||||||||    
T  17033839 tttcgtgaaagagtatgttttaggtggtaatgtttattttcgtggatgttgtccccaggggtgttgaaggtagggtttgactagttgttgtgtgtagg 17033936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 11439919 - 11439790
Alignment:
Q  25 gactgggagtttcatttagaggggtgtt---ctttgggggtg-agtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaag 120  Q
    |||||||||||| |||  ||||||||||   ||||||||||| |||||||||||| ||||||| || ||||| ||||| | || ||| | ||||||||||    
T  11439919 gactgggagtttaattctgaggggtgtttttctttgggggtggagtagtgacgataagtggtgttggatatcatttttacggtggtt-gctttcgtgaag 11439821  T
Q  121 gcgtctgttttaagtggtgatgtttattttg 151  Q
    |  ||||||||| ||||||| || |||||||    
T  11439820 ggatctgttttaggtggtgacgtgtattttg 11439790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 217
Target Start/End: Complemental strand, 26602648 - 26602553
Alignment:
Q  123 gtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtctttt 217  Q
    |||||| ||| |||||||||||||||||  ||||||||||| ||  || |||||||||||||   || |||||||||||||||||| |||| ||||    
T  26602648 gtctgtgttaggtggtgatgtttattttcatgggtgttgtcctcggggttgttgaaggtagggtttggctaggtgttgtgtgtaggggtgtatttt 26602553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 111 - 216
Target Start/End: Original strand, 42374415 - 42374521
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 209  Q
    |||||||||||  | ||||||| |||||||||||||| ||| |||| ||||||  || ||||||||||| || ||  ||| |||||| |||||||| |||    
T  42374415 tttcgtgaaggaatttgttttaggtggtgatgtttatcttggtgggggttgtccccaagggtgttgaagttatgctttgattaggtgctgtgtgtacgag 42374514  T
Q  210 tgtcttt 216  Q
    |||||||    
T  42374515 tgtcttt 42374521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 37200386 - 37200438
Alignment:
Q  126 tgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaa 177  Q
    ||||||| ||||||||||||||||| |||||||||||| ||||| ||||||||    
T  37200386 tgttttaggtggtgatgtttattttagtgggtgttgtcctcatgagtgttgaa 37200438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 46814360 - 46814312
Alignment:
Q  28 tgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||||| |||| |||||||||| ||||| |||||||||||||||||    
T  46814360 tgggagttttatttcgaggggtgttatttggaggtgagtagtgacgatg 46814312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 150
Target Start/End: Original strand, 16148987 - 16149083
Alignment:
Q  52 tctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt 150  Q
    ||||||||||||||||||||||||| ||| |  || ||||| ||||| |||||| | |||| | |||||| |||||||||| ||||||| || ||||||    
T  16148987 tctttgggggtgagtagtgacgatgggtgcttttggatatcgttttt-cagtag-tcgtttacatgaaggtgtctgttttaggtggtgacgtgtatttt 16149083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 17993917 - 17993868
Alignment:
Q  128 ttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttga 176  Q
    ||||||| ||||||||||||||| |||||||||||| | |||||||||||    
T  17993917 ttttaaggggtgatgtttattttggtgggtgttgtccttatgggtgttga 17993868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 27031743 - 27031687
Alignment:
Q  18 tgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgat 75  Q
    |||||| | |||||||||| |||| |||||||||||| | ||||||||||||||||||    
T  27031743 tgttgaagtctgggagttttattttgaggggtgttctct-ggggtgagtagtgacgat 27031687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 50
Target Start/End: Complemental strand, 41126385 - 41126348
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtg 50  Q
    ||||||| ||||||||| ||||||||||||||||||||    
T  41126385 tttggtgatgaggactgagagtttcatttagaggggtg 41126348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 46692723 - 46692664
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||| || |||| ||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  46692723 ggtgttggggtctggaagttttatttggaggg-tgttctttgtgggtgagtagtgacgatg 46692664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 21 - 224
Target Start/End: Original strand, 23983386 - 23983588
Alignment:
Q  21 tgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaag 120  Q
    ||||||| | || |||||||||||| ||| |||||| |||||||||||||| |||| || || ||| ||||| ||||| |||| ||| |||||||||||     
T  23983386 tgaggaccgagaatttcatttagagcggtcttcttttggggtgagtagtgatgatgggtagttatgtatatcgttttt-cagtggtt-gttttcgtgaat 23983483  T
Q  121 gcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttat 219  Q
    | |||||||||| |||||| ||||||||||| ||||||||||| ||||| |||||||||||| |  ||||||||||||||||||||||  ||||||||||    
T  23983484 gagtctgttttaggtggtggtgtttattttggtgggtgttgtcctcatgtgtgttgaaggtaaggtatgactaggtgttgtgtgtagggatgtcttttat 23983583  T
Q  220 gatgt 224  Q
    |||||    
T  23983584 gatgt 23983588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 111 - 210
Target Start/End: Complemental strand, 28534340 - 28534240
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 209  Q
    ||||||||| | |||||||||| |||||||||||||||||| ||||||||||| ||| ||||||||||||||||   || |||| |||||||||||||||    
T  28534340 tttcgtgaaagagtctgttttaggtggtgatgtttattttggtgggtgttgtcctcaggggtgttgaaggtagggtttggctagttgttgtgtgtaggag 28534241  T
Q  210 t 210  Q
    |    
T  28534240 t 28534240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 13 - 92
Target Start/End: Original strand, 3478523 - 3478601
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatc 92  Q
    |||||||||||||||||||||||| |||| |||| ||||||||| ||||||||||||||||| |  |||||||| |||||    
T  3478523 tttggtgttgaggactgggagtttaattttgaggagtgttcttt-ggggtgagtagtgacgacggttggtgatggatatc 3478601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 207
Target Start/End: Complemental strand, 22567941 - 22567844
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtagg 207  Q
    ||||||||| | |||||||||| |||||||||| ||||||| ||| |||||||   | ||||||||||||||||   |||||||||||||||||||||    
T  22567941 tttcgtgaaagagtctgttttaggtggtgatgtgtattttggtggatgttgtccctaggggtgttgaaggtagggtttgactaggtgttgtgtgtagg 22567844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 24324707 - 24324545
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgtt---ctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttg 109  Q
    ||||||||| ||||| | |||||| |||| ||||||||||   |||| ||||||||||||||||||| |||||  || ||||| || || || | ||       
T  24324707 tttggtgttcaggacggagagttttattttgaggggtgtttttctttaggggtgagtagtgacgatg-gtggt--tggatatcgttcttacaatggtcgt 24324611  T
Q  110 ttttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgtt 174  Q
    |||||||||||| |||||||||||||||||| || |||||| ||| |||||||| ||| |||||||    
T  24324610 ttttcgtgaaggagtctgttttaagtggtgacgtgtattttggtgagtgttgtcctcaagggtgtt 24324545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 82
Target Start/End: Original strand, 34390149 - 34390204
Alignment:
Q  27 ctgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||||| |||| |||||||||||||||||| ||||||||||||||| |||||    
T  34390149 ctgggagttttattttgaggggtgttctttggggatgagtagtgacgatgggtggt 34390204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 6585058 - 6585124
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||| | |||||||||| |||| |||||||| | ||||| |||||||||||||||||||||||    
T  6585058 ggtgttgaagtctgggagttttattttgaggggtgctatttggaggtgagtagtgacgatgagtggt 6585124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 151
Target Start/End: Original strand, 1321011 - 1321105
Alignment:
Q  57 gggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtg-aaggcgtctgttttaagtggtgatgtttattttg 151  Q
    ||||||||||||||||||||||||||  |  ||||| ||||| |||| | ||| ||||||| |||| |||||||||| |||||||||| |||||||    
T  1321011 gggggtgagtagtgacgatgagtggtattagatatcgtttttacagt-ggttgctttcgtgaaaggggtctgttttaggtggtgatgtgtattttg 1321105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 6716646 - 6716575
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtg-ttctttgggggtgagtagtgacgatgagtggtg 83  Q
    |||||||||||||| ||||||||| |||| | |||||| ||| |||||||||||||||||| ||| ||||||    
T  6716646 tttggtgttgaggaatgggagtttaattttgtggggtgtttcgttgggggtgagtagtgacaatgggtggtg 6716575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 150
Target Start/End: Original strand, 36449284 - 36449383
Alignment:
Q  48 gtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttat 147  Q
    ||||||||| | ||||||||||||||||||||||| ||| ||||| ||||| |||  |||   ||||||||||  |||| ||||| ||||||||||||||    
T  36449284 gtgttcttttgtggtgagtagtgacgatgagtggttatggatatcgttttt-cagcggtt--gtttcgtgaagtagtctattttaggtggtgatgtttat 36449380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 8745324 - 8745388
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtg---ttctttgggggtgagtagtgacga 74  Q
    ||||||||| | |||||||||||| |||| ||||||||   ||||||||||||||||||||||||    
T  8745324 tttggtgttcaagactgggagtttaattttgaggggtgtttttctttgggggtgagtagtgacga 8745388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 116 - 216
Target Start/End: Complemental strand, 31409807 - 31409706
Alignment:
Q  116 tgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtct 214  Q
    |||||| |||||||||| ||| ||||||||||||| | |||||||||| |||||| |||| ||| || | | || |||||||||||| ||||  ||||||    
T  31409807 tgaaggagtctgttttatgtgatgatgtttattttggagggtgttgtcctcatggatgttaaagatatggattggctaggtgttgtgggtagtggtgtct 31409708  T
Q  215 tt 216  Q
    ||    
T  31409707 tt 31409706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 97
Target Start/End: Original strand, 9107318 - 9107401
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttt 97  Q
    ||||||| |||||| |||| |||||||||||||||| ||| ||| ||| ||||||||| ||||| ||||| ||| ||||| ||||    
T  9107318 tttggtgatgagga-tgggtgtttcatttagaggggagttattttgggatgagtagtggcgatgggtggttatggatatcgtttt 9107401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 31972038 - 31971979
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||| || |||||||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  31972038 ggtgttggggtctgggagttttatttggaggg-tgttctttgtgggtgagtagtgacgatg 31971979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 33 - 81
Target Start/End: Complemental strand, 35745710 - 35745662
Alignment:
Q  33 gtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtgg 81  Q
    |||| |||| ||| |||||||||||||||||||||||||||||| ||||    
T  35745710 gttttattttgagaggtgttctttgggggtgagtagtgacgatgggtgg 35745662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 47325789 - 47325730
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||| || |||||||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  47325789 ggtgttggggtctgggagttttattttgaggg-tgttctttgtgggtgagtagtgacgatg 47325730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 76
Target Start/End: Original strand, 3867322 - 3867352
Alignment:
Q  46 gggtgttctttgggggtgagtagtgacgatg 76  Q
    |||||||||||||||||||||||||||||||    
T  3867322 gggtgttctttgggggtgagtagtgacgatg 3867352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 174
Target Start/End: Original strand, 33719183 - 33719300
Alignment:
Q  58 ggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggt 156  Q
    |||||||||||||||||||||| ||| || ||||| ||||| |||  ||   |||| ||||||| ||| |||||| | ||||||   |||||| ||||||    
T  33719183 ggggtgagtagtgacgatgagtagtgttggatatcatttttacagaggtcgttttttgtgaaggagtcggttttaggcggtgataggtattttggtgggt 33719282  T
Q  157 gttgtcgtcatgggtgtt 174  Q
    |||||| ||||| |||||    
T  33719283 gttgtcctcatgagtgtt 33719300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 38306438 - 38306513
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatc 92  Q
    ||||||| || ||| |||||| |||| ||||| |||||||||  ||||||||||||||||| |||||| || |||||    
T  38306438 ggtgttggggtctgtgagttttattttgaggg-tgttctttgtaggtgagtagtgacgatgggtggtggtggatatc 38306513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 13 - 220
Target Start/End: Complemental strand, 32935249 - 32935043
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttt 112  Q
    ||||||| |||| |||| ||||||||||||||||| |||| ||||||| | |||||||| |||| ||||| ||| ||||| ||||||  |  |   ||||    
T  32935249 tttggtgatgagcactgtgagtttcatttagagggatgttttttgggg-tcagtagtgatgatgggtggttatgtatatcgtttttgagggggc--gttt 32935153  T
Q  113 tcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtaggc-aatgactaggtgttgtgtgtaggagt 210  Q
    |||| |||| |||| ||||| |||||| |||||||||| |||||||||||| || || |||||||||||| || |||| || || |||||||||| | ||    
T  32935152 tcgttaaggagtctattttaggtggtggtgtttattttggtgggtgttgtcctcgtgagtgttgaaggtaagctaatggctcggcgttgtgtgtaagggt 32935053  T
Q  211 gtcttttatg 220  Q
    ||||||||||    
T  32935052 gtcttttatg 32935043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 111 - 183
Target Start/End: Complemental strand, 17278313 - 17278240
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtagg 183  Q
    ||||||||||| ||||| |||| ||||| |||||||||||| |||||||||||  |||||||||||||||||||    
T  17278313 tttcgtgaaggagtctgatttaggtggtaatgtttattttggtgggtgttgtccgcatgggtgttgaaggtagg 17278240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 33 - 218
Target Start/End: Complemental strand, 33968519 - 33968340
Alignment:
Q  33 gtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttta 132  Q
    |||||||||||||||||||| ||| ||| |||||||||| ||||  |||| ||| ||| | ||||| |||| ||  ||||| || || | ||||||||||    
T  33968519 gtttcatttagaggggtgttattttgggatgagtagtgatgatgc-tggttatggataccattttt-cagtggtc-gtttt-gtaaaagagtctgtttta 33968424  T
Q  133 agtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtctttta 218  Q
       |||||||| ||||||| ||||||||||| ||| ||||||||||||||||   || ||||||| |||||||||| ||||||||||    
T  33968423 ---ggtgatgtctattttggtgggtgttgtcctcaagggtgttgaaggtagggtttggctaggtgatgtgtgtaggggtgtctttta 33968340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 151
Target Start/End: Complemental strand, 16180727 - 16180687
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg 151  Q
    |||| |||||| |||||||||| ||||||||||||||||||    
T  16180727 tttcttgaaggggtctgttttaggtggtgatgtttattttg 16180687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 33 - 220
Target Start/End: Complemental strand, 921 - 736
Alignment:
Q  33 gtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttta 132  Q
    ||||||||||||||||||||   | ||| ||||||||||||||||||||| ||| ||||| ||||  ||||  |    || |||||| | ||||||||||    
T  921 gtttcatttagaggggtgttacgttgggatgagtagtgacgatgagtggttatggatatcgttttc-cagtgatca--ttccgtgaaagagtctgtttta 825  T
Q  133 agtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatg 220  Q
     ||||||||||||||||| |||  ||||||| |||||||||||||||||| |   || ||||||||||||||||||  |||||||||||    
T  824 ggtggtgatgtttattttggtgtatgttgtcctcatgggtgttgaaggtacgatttggctaggtgttgtgtgtagggatgtcttttatg 736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 1e-18; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 21398229 - 21398067
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgtt-ctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgtt 111  Q
    |||||||||||||||| |||||||  ||||||||| |||| | ||||||||||||| ||| |||| ||||||  | ||||| ||||| ||  || |||||    
T  21398229 tttggtgttgaggactaggagtttattttagagggttgtttcgttgggggtgagtactgatgatgggtggtgcgggatatcgtttttacaa-aggttgtt 21398131  T
Q  112 ttcgtgaaggcgtctgttttaagtggtgatgttta-ttttgtgggtgttgtcgtcatgggtgtt 174  Q
    |||||||||||||||||||||  |||||| || || ||||||  |||||||| ||| |||||||    
T  21398130 ttcgtgaaggcgtctgttttagatggtgacgtgtatttttgtaagtgttgtcctcaggggtgtt 21398067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 111 - 207
Target Start/End: Original strand, 8731169 - 8731267
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgtt-gtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtagg 207  Q
    ||||||||| |  ||||||||| |||||||||||||||||| |||||||| ||| ||| ||||||||||||| ||   |||||||||||||||||||||    
T  8731169 tttcgtgaaagactctgttttaggtggtgatgtttattttggtgggtgtttgtcatcaggggtgttgaaggtggggtttgactaggtgttgtgtgtagg 8731267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 33 - 201
Target Start/End: Complemental strand, 17853958 - 17853792
Alignment:
Q  33 gtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgtttta 132  Q
    |||||||||||||| || | |||| |||||||||||||  |||| ||||| ||| ||||| ||||| |||| | | |||| ||| |||| ||||||||||    
T  17853958 gtttcatttagaggtgtctacttttggggtgagtagtggtgatgggtggttatggatatcgttttt-cagt-gatcgttt-cgtaaaggagtctgtttta 17853862  T
Q  133 agtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtg 201  Q
       |||||||||||||||| |||||||| || ||||||||| ||||||||||   || ||||||||||||    
T  17853861 gaaggtgatgtttattttggtgggtgttttcctcatgggtggtgaaggtagggtttggctaggtgttgtg 17853792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 13 - 174
Target Start/End: Complemental strand, 14302355 - 14302191
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgtt---ctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttg 109  Q
    ||||||||| |||| ||||||||| |||| ||||||| ||   |||||||| |||||||||||||   |||||| || ||||| ||||| || | | | |    
T  14302355 tttggtgttcaggagtgggagtttaattttgaggggtatttttctttggggatgagtagtgacgacaggtggtgttggatatcgtttttaca-ttggtcg 14302257  T
Q  110 ttttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgtt 174  Q
    |||||| |||||  ||||||||| ||||||| || |||||| |||||||||||| ||| |||||||    
T  14302256 ttttcgcgaaggaatctgttttaggtggtgacgtgtattttggtgggtgttgtcatcaggggtgtt 14302191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 143
Target Start/End: Complemental strand, 7161919 - 7161795
Alignment:
Q  17 gtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgt 116  Q
    |||||| || |||||||||| |||| || || ||||||||||||||||||||||||| || |||||| || | ||| | ||| |||| | ||||||| ||    
T  7161919 gtgttggggtctgggagttttattttgatgg-tgttctttgggggtgagtagtgacgttgggtggtggtggaaatcgtgtttacagt-gcttgtttttgt 7161822  T
Q  117 gaaggcgtctgttttaagtggtgatgt 143  Q
    ||||| |||||||||| || |||||||    
T  7161821 gaaggagtctgttttaggtagtgatgt 7161795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 183
Target Start/End: Complemental strand, 39184003 - 39183942
Alignment:
Q  123 gtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgttgaaggtagg 183  Q
    |||||||||| |||||||| |||||||| |||||||||||| ||| ||||||||||||||||    
T  39184003 gtctgttttaggtggtgatctttattttagtgggtgttgtcctcaagggtgttgaaggtagg 39183942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 13 - 76
Target Start/End: Complemental strand, 13954158 - 13954094
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtg-ttctttgggggtgagtagtgacgatg 76  Q
    ||||| |||||||||||||||||| ||||||||||||| ||| ||||||| |||| |||||||||    
T  13954158 tttggcgttgaggactgggagtttaatttagaggggtgtttcgttgggggagagttgtgacgatg 13954094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 107 - 174
Target Start/End: Original strand, 30097598 - 30097666
Alignment:
Q  107 ttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgtt 174  Q
    ||||||||||||||| |||||||||| ||||||| || |||||| |||||||||||| |||||| ||||    
T  30097598 ttgttttcgtgaaggagtctgttttaggtggtgacgtgtattttggtgggtgttgtcatcatggatgtt 30097666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 80
Target Start/End: Complemental strand, 39024352 - 39024285
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtg 80  Q
    ||||||| ||||||||||| | ||| |||| | |||||||||||  ||||||||||||||||||||||    
T  39024352 tttggtgatgaggactgggtgcttcttttacaagggtgttcttttagggtgagtagtgacgatgagtg 39024285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 7391902 - 7391845
Alignment:
Q  17 gtgttgaggactgggagtttcatttagaggggtgtt-ctttgggggtgagtagtgacga 74  Q
    |||||||||| |||||| || |||| |||||||||| ||||||||||||||||||||||    
T  7391902 gtgttgaggaatgggagatt-attttgaggggtgtttctttgggggtgagtagtgacga 7391845  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 92
Target Start/End: Complemental strand, 18313518 - 18313472
Alignment:
Q  46 gggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatc 92  Q
    ||||||||||   |||||||||||||||||||||||||||| |||||    
T  18313518 gggtgttcttcatgggtgagtagtgacgatgagtggtgatggatatc 18313472  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 224
Target Start/End: Complemental strand, 24072055 - 24071998
Alignment:
Q  167 tgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatgatgt 224  Q
    |||||||||||||||||   ||||||||||||  ||||||  ||||||||||||||||    
T  24072055 tgggtgttgaaggtagggtttgactaggtgttacgtgtagaggtgtcttttatgatgt 24071998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 18593420 - 18593479
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||| || |||||||||| |||| ||||  ||||||||| ||||||||||||||||||    
T  18593420 ggtgttggggtctgggagttttatttggagga-tgttctttgtgggtgagtagtgacgatg 18593479  T

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Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 13 - 74
Target Start/End: Original strand, 19673271 - 19673332
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacga 74  Q
    ||||||||||||||||| |||||| |||| |||| |||||||||||||||||||||||||||    
T  19673271 tttggtgttgaggactgagagtttaattttgaggagtgttctttgggggtgagtagtgacga 19673332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 16832931 - 16832779
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttg---ggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttg 109  Q
    ||||||||| | ||||| |||||| |||| |||||||||| |||    ||||||||||||||||| | |||||| || ||||||||||| |||  ||       
T  16832931 tttggtgttcaagactgtgagtttaattttgaggggtgttttttctttggggtgagtagtgacgacgggtggtgttggatatcttttttacagcggtcgt 16832832  T
Q  110 ttttcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgttgtc 162  Q
    |||||||| |||  | ||||||| ||||||| |||||||| ||||||||||||    
T  16832831 ttttcgtgcaggaatatgttttaggtggtgacgtttatttggtgggtgttgtc 16832779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 19815130 - 19815071
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgac 72  Q
    ||||||||||||||||| |||||| || | |||  |||||||||||||||||||||||||    
T  19815130 tttggtgttgaggactgagagtttaatcttgagaagtgttctttgggggtgagtagtgac 19815071  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 82
Target Start/End: Complemental strand, 35341249 - 35341179
Alignment:
Q  11 agtttggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    ||||||||||||| |  ||||||||| |||| |||||||||||| | ||||||||||||||||||| |||||    
T  35341249 agtttggtgttgaagtttgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatgggtggt 35341179  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 12296335 - 12296417
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 98  Q
    |||| ||||||| | | |||||||||||||||||||| ||| ||| ||||||||| ||||| ||||| ||| ||||| |||||    
T  12296335 ggtgatgaggacggagtgtttcatttagaggggtgttattttgggatgagtagtggcgatgggtggttatggatatcgttttt 12296417  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 31050566 - 31050506
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    |||||||| | ||||  |||| |||| ||||||||||| ||||||||||||||||||||||    
T  31050566 ggtgttgaagtctggctgttttattttgaggggtgttccttgggggtgagtagtgacgatg 31050506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 57 - 162
Target Start/End: Complemental strand, 38637096 - 38636993
Alignment:
Q  57 gggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt-gtggg 155  Q
    |||||||||||||||||||| |||||  || ||||| ||||| |||  ||| ||||||||||||| || ||||||| |||||||  | |||||| |||||    
T  38637096 gggggtgagtagtgacgatgggtggt--tggatatcatttttacagcggtt-gttttcgtgaaggagtttgttttaggtggtgacatgtattttcgtggg 38637000  T
Q  156 tgttgtc 162  Q
    |||||||    
T  38636999 tgttgtc 38636993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 92
Target Start/End: Original strand, 30964624 - 30964689
Alignment:
Q  26 actgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatc 92  Q
    ||||||||||| |||| ||||| ||||||||| ||||||||||||| |||| | |||| ||||||||    
T  30964624 actgggagttttattttgaggg-tgttctttgtgggtgagtagtgatgatgggcggtggtgaatatc 30964689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 159
Target Start/End: Original strand, 48098504 - 48098651
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgt----tctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagttt 108  Q
    ||||||||| | ||||||||||||  |||  ||||||||    ||||||||||||||||||||||| | || |||||| ||||| ||||| |||| | |     
T  48098504 tttggtgtttaagactgggagtttattttttaggggtgtattttctttgggggtgagtagtgacgacgggttgtgatggatatcgtttttacagt-ggtc 48098602  T
Q  109 gttttcgtgaaggcgtctgttttaagtggtgatgtttattttgtgggtgtt 159  Q
    ||||| ||||| | |  ||||||| ||||||| || ||||| |||||||||    
T  48098603 gtttttgtgaaagag--tgttttaggtggtgacgtgtatttggtgggtgtt 48098651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 77
Target Start/End: Original strand, 25753343 - 25753410
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtgtt---ctttgggggtgagtagtgacgatga 77  Q
    |||| |||| |||||||  ||||| |||| ||||||||||   |||||||||||||||||||||||||    
T  25753343 tttgatgttcaggactgaaagtttaattttgaggggtgtttttctttgggggtgagtagtgacgatga 25753410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 2825971 - 2826018
Alignment:
Q  28 tgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||||| |||| |||||||||||| | |||||||||||||||||||    
T  2825971 tgggagttttattttgaggggtgttctct-ggggtgagtagtgacgatg 2826018  T

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Target: chr8 (Bit Score: 44; Significance: 4e-16; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 174
Target Start/End: Complemental strand, 17656606 - 17656483
Alignment:
Q  52 tctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt- 150  Q
    ||||||||||||||||||||| ||||| |||| || ||||| |||||||||| ||   ||||| |||||| ||||||||||  |||||| ||  |||||     
T  17656606 tctttgggggtgagtagtgacaatgagcggtgttggatatcgtttttgcagtggtcgtttttcttgaaggagtctgttttagatggtgacgtgaattttg 17656507  T
Q  151 gtgggtgttgtcgtcatgggtgtt 174  Q
    |||||||||||| ||| |||||||    
T  17656506 gtgggtgttgtcctcaagggtgtt 17656483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 220
Target Start/End: Complemental strand, 25184953 - 25184861
Alignment:
Q  129 tttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatg 220  Q
    |||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||   || |||||| ||||||||| |  |||||||||||    
T  25184953 tttaggtggtgatgtttattttggtgggtgttgtcctcatgagtgttgaaggtagggcttggctaggtattgtgtgtatggatgtcttttatg 25184861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 111 - 212
Target Start/End: Original strand, 15906939 - 15907041
Alignment:
Q  111 tttcgtgaaggcgtctgttttaagtggtgatgtttattt-tgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggag 209  Q
    |||||||||||  ||||||||  |||||||||| ||| | ||||||||| ||| ||||||||||||||||||||    | |||||||||||||||||| |    
T  15906939 tttcgtgaagggatctgtttttggtggtgatgtctatctctgtgggtgtggtcctcatgggtgttgaaggtagggttgggctaggtgttgtgtgtagggg 15907038  T
Q  210 tgt 212  Q
    |||    
T  15907039 tgt 15907041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 224
Target Start/End: Original strand, 1760784 - 1760992
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcg 115  Q
    |||| |||| || ||| |||| || |||||||||||| |||  | ||||||||||||||||| |||| ||  ||||| ||||| |||  |||   |||||    
T  1760784 ggtgatgagtacagggtgtttgatgtagaggggtgttattttagagtgagtagtgacgatgaatggttatagatatcattttttcagcggttg--tttcg 1760881  T
Q  116 tgaaggcgtctgttttaagtggtgatgtttattttgt--gggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtc 213  Q
    ||  || |||||||||| ||||| |  |||||||||   ||||||||||  |||| |||||||||| |||   ||| ||||||||||| ||| || ||||    
T  1760882 tggtggagtctgttttaggtggtcaaatttattttgatggggtgttgtccgcatgagtgttgaaggcagggtttgattaggtgttgtgcgtatgaatgtc 1760981  T
Q  214 ttttatgatgt 224  Q
    |||||||||||    
T  1760982 ttttatgatgt 1760992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Complemental strand, 17720610 - 17720545
Alignment:
Q  33 gtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatctttttt 98  Q
    ||||||||||||||||| |  ||| ||||||||||||||||||  ||||| ||| |||||||||||    
T  17720610 gtttcatttagaggggtttatttttggggtgagtagtgacgatatgtggttatgtatatctttttt 17720545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 15821282 - 15821218
Alignment:
Q  18 tgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||| | |||||||||| |||| |||| ||||||||| || |||||||||| |||||||||||    
T  15821282 tgttgaagtctgggagttttattttgaggagtgttcttttggagtgagtagtggcgatgagtggt 15821218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 12197945 - 12197847
Alignment:
Q  51 ttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt 150  Q
    |||||||||||||||||||||||| | |||||| || ||||| |||||  ||| | | || ||| |||||||||||||| || ||||||| || ||||||    
T  12197945 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagt-ggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttt 12197847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 150
Target Start/End: Complemental strand, 12442373 - 12442275
Alignment:
Q  51 ttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt 150  Q
    |||||||||||||||||||||||| | |||||| || ||||| |||||  ||| | | || ||| |||||||||||||| || ||||||| || ||||||    
T  12442373 ttctttgggggtgagtagtgacgacgggtggtgctggatatcgtttttttagt-ggtcgtgttcatgaaggcgtctgttgtaggtggtgacgtgtatttt 12442275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 82
Target Start/End: Complemental strand, 35816124 - 35816085
Alignment:
Q  43 gaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  35816124 gaggggtgttctttgggggtgagtagtgatgatgggtggt 35816085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 31207254 - 31207207
Alignment:
Q  28 tgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  31207254 tgggagttttattttgaggg-tgttctttgtgggtgagtagtgacgatg 31207207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Complemental strand, 37986751 - 37986696
Alignment:
Q  27 ctgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtg 83  Q
    |||||||||| |||| ||||| ||||||||| ||||||||| |||||||| ||||||    
T  37986751 ctgggagttttatttggaggg-tgttctttgtgggtgagtaatgacgatgggtggtg 37986696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 41893306 - 41893247
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    |||||||||| |||||||||  ||||  |||| ||||||||| ||||||||||||||||||    
T  41893306 ggtgttgaggtctgggagttctattttcaggg-tgttctttgtgggtgagtagtgacgatg 41893247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 23328255 - 23328189
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggt 82  Q
    |||||||| | |||||||||| |||| ||| |||||||||||||||||||||||||||||| |||||    
T  23328255 ggtgttgaagtctgggagttttattttgagtggtgttctttgggggtgagtagtgacgatgggtggt 23328189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 219
Target Start/End: Original strand, 27399217 - 27399323
Alignment:
Q  114 cgtgaaggcgtctgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgt 212  Q
    |||||||| | |||||||| ||| |||||||||||||| ||||||||||| ||||||||||||||||| |    || ||| |||||||||||| | ||||    
T  27399217 cgtgaaggagcctgttttaggtgatgatgtttattttggtgggtgttgtcctcatgggtgttgaaggtcgagcttggctaagtgttgtgtgtaagtgtgt 27399316  T
Q  213 cttttat 219  Q
    |||||||    
T  27399317 cttttat 27399323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 147 - 224
Target Start/End: Complemental strand, 45354722 - 45354645
Alignment:
Q  147 ttttgtgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtcttttatgatgt 224  Q
    |||||||||||||||| | || |||||||||||||||   || ||||||| |||||||||| ||||||||||||||||    
T  45354722 ttttgtgggtgttgtcctaataggtgttgaaggtagggtttggctaggtgctgtgtgtaggggtgtcttttatgatgt 45354645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 78
Target Start/End: Complemental strand, 39021186 - 39021120
Alignment:
Q  13 tttggtgttgaggactgggagtttcatttagaggggtg-ttctttgggggtgagtagtgacgatgag 78  Q
    ||||||||||||||||| ||||||||||| || | ||| ||||||||| ||||||||||||||||||    
T  39021186 tttggtgttgaggactgagagtttcattttgacgcgtgtttctttgggtgtgagtagtgacgatgag 39021120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 181
Target Start/End: Complemental strand, 25594431 - 25594289
Alignment:
Q  37 catttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtg 136  Q
    |||||||||| ||||| | | ||| ||||||||| ||||| |||||  || ||||| ||||| |||| ||  ||||| ||||||| || ||||||| ||     
T  25594431 catttagaggagtgttatcttgggatgagtagtggcgatgggtggtt-tggatatcgttttttcagtggtc-gtttt-gtgaaggagtatgttttaggta 25594335  T
Q  137 gtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggta 181  Q
    |||||||||||| || ||||||||||| ||||||||||||||||||    
T  25594334 gtgatgtttattgtggtgggtgttgtcctcatgggtgttgaaggta 25594289  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 126 - 217
Target Start/End: Complemental strand, 823233 - 823141
Alignment:
Q  126 tgttttaagtggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtaggcaatgactaggtgttgtgtgtaggagtgtctttt 217  Q
    ||||||| ||||||| ||| |||||| |||||| |||| ||||||||||||||||||||   ||| |||| |||||||||| | |||||||||    
T  823233 tgttttaggtggtgaagttaattttggtgggtgatgtcctcatgggtgttgaaggtaggggttgattaggggttgtgtgtaagggtgtctttt 823141  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 174
Target Start/End: Original strand, 37123562 - 37123715
Alignment:
Q  24 ggactgggagtttcatttagaggggtgttc---tttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaag 120  Q
    |||||| |||||| |||| |||||||||||   ||||| ||||||||||||| |   |||||| || ||||| ||||| |||| ||  ||||||||||||    
T  37123562 ggactgagagtttaatttggaggggtgttcatctttggcggtgagtagtgacaacaggtggtgttggatatcgtttttacagtggtc-gttttcgtgaag 37123660  T
Q  121 gcgtctgttttaagtggtgatgtttatttt-gtgggtgttgtcgtcatgggtgtt 174  Q
      |||| |||||  ||||||||| |||||| |||||||||||| ||| |||||||    
T  37123661 aagtctattttatatggtgatgtgtattttggtgggtgttgtcttcaagggtgtt 37123715  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 109 - 151
Target Start/End: Original strand, 32010029 - 32010071
Alignment:
Q  109 gttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 151  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  32010029 gttttcgtgaaggagtctgttttaggtggtgatgtttattttg 32010071  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 7105025 - 7105140
Alignment:
Q  24 ggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcg 123  Q
    ||||||||||||| ||||  |||||||||  || ||||||||||||||||||| |||||| || |||   |||||  ||| | |||||||| |||||  |    
T  7105025 ggactgggagttttattttaaggggtgtttctttggggtgagtagtgacgatgggtggtggtggatactgtttttatagt-gcttgttttcttgaagaag 7105123  T
Q  124 tctgttttaagtggtga 140  Q
    ||||||||| |||||||    
T  7105124 tctgttttaggtggtga 7105140  T

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Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 103
Target Start/End: Original strand, 14879606 - 14879700
Alignment:
Q  12 gtttggtgttgaggactgggagtttcatttagaggggtgtt---ctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagt 103  Q
    |||||||||| | | |||||||||| |||| ||||||||||   |||| ||||||| ||||||||||| |||||| || ||||| ||||| ||||    
T  14879606 gtttggtgttcaagtctgggagtttaattttgaggggtgtttttctttcggggtgaatagtgacgatgtgtggtgttggatatcgttttttcagt 14879700  T

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Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 183
Target Start/End: Original strand, 16266009 - 16266057
Alignment:
Q  136 ggtgatgtttattttg-tgggtgttgtcgtcatgggtgttgaaggtagg 183  Q
    |||||||||||||||| ||| ||||||| ||||||||||||||||||||    
T  16266009 ggtgatgtttattttggtggatgttgtcctcatgggtgttgaaggtagg 16266057  T

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Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 160
Target Start/End: Complemental strand, 46358220 - 46358167
Alignment:
Q  109 gttttcgtgaaggcgtctgttttaagtggtgatgtttat--tttgtgggtgttg 160  Q
    ||||||||||||| |||||||||| ||| ||||||||||  |||||||||||||    
T  46358220 gttttcgtgaaggagtctgttttaggtgatgatgtttattctttgtgggtgttg 46358167  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 54 - 151
Target Start/End: Original strand, 12086455 - 12086551
Alignment:
Q  54 tttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttattttg 151  Q
    ||||||| |||||| |||||||  || ||| |||||||| ||||| |||| | | |||||| ||||  | ||||||||| ||||||||||||||||||    
T  12086455 tttggggatgagtactgacgatatgtcgtgttgaatatcgtttttacagt-gatcgttttcttgaatacatctgttttaggtggtgatgtttattttg 12086551  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 40023466 - 40023417
Alignment:
Q  27 ctgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    |||||||||| |||| |||||| ||||||| ||| |||||||||||||||    
T  40023466 ctgggagttttattttgaggggcgttcttttgggatgagtagtgacgatg 40023417  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 27399128 - 27399176
Alignment:
Q  22 gaggactgggagtttcatttagaggggtgttctttgggggtgagtagtg 70  Q
    ||||||| || |||||||||||| ||||||||||| ||| |||||||||    
T  27399128 gaggacttggtgtttcatttagacgggtgttcttttgggctgagtagtg 27399176  T

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Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 45398984 - 45399032
Alignment:
Q  28 tgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||||  |||| | ||||||||| ||||||||||||||||||||||    
T  45398984 tgggagttctattttgtggggtgttcgttgggggtgagtagtgacgatg 45399032  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 76
Target Start/End: Original strand, 47235875 - 47235934
Alignment:
Q  16 ggtgttgaggactgggagtttcatttagaggggtgttctttgggggtgagtagtgacgatg 76  Q
    ||||||| || ||| |||||| |||| ||||| ||||||||| ||||||||||||||||||    
T  47235875 ggtgttggggtctgcgagttttattttgaggg-tgttctttgtgggtgagtagtgacgatg 47235934  T

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Target: scaffold0050 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0050
Description:

Target: scaffold0050; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 51 - 174
Target Start/End: Original strand, 36920 - 37040
Alignment:
Q  51 ttctttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt 150  Q
    ||||||||||||||||||||||| ||  ||||  || || || ||||| |||| ||  | ||||||||||| |||||||||| ||||||| || ||||||    
T  36920 ttctttgggggtgagtagtgacggtggatggt--tggatgtcgtttttacagtggt--ggtttcgtgaaggagtctgttttaggtggtgacgtgtatttt 37015  T
Q  151 g-tgggtgttgtcgtcatgggtgtt 174  Q
    | ||||||| ||| |||||||||||    
T  37016 gttgggtgtggtcctcatgggtgtt 37040  T

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Target: scaffold1384 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1384
Description:

Target: scaffold1384; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 1523 - 1428
Alignment:
Q  54 tttgggggtgagtagtgacgatgagtggtgatgaatatcttttttgcagtagtttgttttcgtgaaggcgtctgttttaagtggtgatgtttatttt 150  Q
    ||||||||| ||||||||||| | |||||| || ||||| ||||| |||| | ||||| ||||| ||| ||| |||||| ||||||| || ||||||    
T  1523 tttgggggtcagtagtgacgacgtgtggtgttggatatcgtttttacagt-ggttgttctcgtgtaggagtcagttttaggtggtgacgtgtatttt 1428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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